Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001638

Physical Location & Seq

Genomic Coordinates Reverse (-)

26304164 .. 26310719

Gene Structure 6556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1170600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGAATGGGTGCGTCCCCGATTTCGAAATGGACGACGATTACTCACTTCCCACTTCCTCTGCTCTCAACCGACCCAGAAAATCAACCATGCCGGAAGATGATGTCATGGAGCTGCTATGGCAGAACGGCCAAGTCGTCATGCAGAACCAGAACCAGAGGTCTGCAGTCAATAGTAAAAGATCGCACCAGTCCAAGTACGACGTCGTTTTGCCCGACGACGGTGCCGGCATCACCAGACCGGCCCCCCAACCCCAGCCGCAGGCCCAGAACCCGCACCTGTTTGTGCAAGAAGATGAAATGGCCTCGTGGCTTCAGTACCCTCTCGTCGACGACCCCTTCTCCGCGGACCTCCTCTATCCCGATTCCACCACTTCCGAGCTCCGGCAGCTGCAGGTTTCGGCGCCGCCCCCCGCTTCGAGGCTGCCGATCCATACGCCGAGGAGGACCGAAGTCCAGAACTTTCTGCACTTCGCCAGGCCCAACAACAACAACGCCAGCAGCAACAGGCCTATGATTAAGGAAATGGCGCCGTCGGGCTCGAAGAAGAGCGTGGTTAGGGAGACAATGACGGTGGTGGACTCCAGCGACACTTCGCTGGTGGGTCCAAGCTCTAGGGCTTTGGATTCTAGGCCCGACGGCGCTGGTGGCGGCTTGGCTAATGGAGCGACGTCGTTTCCAACTACTGCGACTGCTGGGACGTCGTTTCCGGCGAAAGAAGTGTGTGAGATGTCGCTGACGTCGTCGCCAGGAGGCTCCAGCGCGAGTGCCAGCGCAAGCGCCGAGCCGATGTCGGCTCATAAGCCGCCGCCGACTGCCGATAACCGGAAGCGGAAAGGGAGAGAAGTCGCCGCCGCCGACGACGCCGAGATTCAAAGCGAGGATGTTGAGTTTGAATCTGCCAATGGAAAGAAACAAGTCCGAGGATCGACATCATCTACAAAGAGATCACGTGCTGCAGAGGTCCACAATCTCTCTGAGAGGATTTCTGTGCAGAGACGTCGAGATAGGATAAATGAAAAGATGAAGGCTTTACAAGAACTAATACCTCGATGCAATAAGTCGGATAAAGCATCAATGCTGGATGAAGCAATTGAGTACTTGAAATCACTCCAGTTACAAGTACAGATGGTGTCCATGGGATGCGGCATGGTCCCTATGATGTTTCCTGGAGTTCAGCAGATGATGTCCATGCCGATGGGGATGGGAATTGGAATGGGCATGGGAATGGGAATGGAAATGGCTGGCATCAATCGCCCTATGATGCCTTTTCCAAATGTAATATCCGGTTCACCCATGCCAACAGCGGCCGCACATATGGGACCTAGGTTCCCTATACCACCATTTCACATGCAGCCTATTCCTGCAAGTGATCCTACCAGAGTTCCAGCAGTGAACCAGACAGATCATATGGTAAACTCGCTTGGGGCACAAAATCCAAACCAATCACGGATGCCAAATTTTGCAGATCCTTATCAGCAGTTTTTCGGTCCCCAACAGATGCAGTTACCATTACAGCAGAACCAAGCAATGCCCCAGCCGACTACTGGCAAGCCGAGTTCCAGTAGGGGACCTGAAACTCATGAAAACCATCAATCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

534

Amino Acids

57.97

Weight (kDa)

6.29

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	322 - 371	5.5e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	331 - 373	7.2e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28800 AT4G28800 AT4G28811 AT4G28815 AT4G28815
fragaria_vesca	FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790
malus_domestica	MD05G1182300.v1.1 MD10G1170600.v1.1
prunus_persica	Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1
pyrus_communis	pycom10g14700
rosa_chinensis	RchiOBHm_Chr6g0285491
rosa_laevigata	RLG00000012635
rosa_multiflora	Rmu_sc0000284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183100
rosa_rugosa	Rorug06G0174800 Rorug06G0174800 Rorug06G0174900
rosa_samantha	Rh6AG286500 Rh6BG287700 Rh6CG288800 Rh6DG281600
rosa_wichuraiana	Rw6G024610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	5 cut(s)	204, 671, 701, 740, 1000
Acc36I	ACCTGC	1 cut(s)	382
AccB1I	GGYRCC	3 cut(s)	221, 400, 526
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	2 cut(s)	344, 761
AclWI	GGATC	4 cut(s)	421, 931, 1364, 1460
AcoI	YGGCCR	2 cut(s)	127, 1305
AcsI	RAATTY	1 cut(s)	1456
AcuI	CTGAAG	1 cut(s)	296
AcvI	CACGTG	1 cut(s)	950
AcyI	GRCGYC	8 cut(s)	201, 401, 527, 668, 698, 737, 861, 997
AfaI	GTAC	4 cut(s)	197, 317, 1097, 1122
AfiI	CCNNNNNNNGG	6 cut(s)	218, 259, 381, 417, 822, 1544
AgsI	TTSAA	3 cut(s)	872, 893, 1102
AjnI	CCWGG	3 cut(s)	473, 745, 1165
AluBI	AGCT	4 cut(s)	112, 379, 388, 609
AluI	AGCT	4 cut(s)	112, 379, 388, 609
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	554, 988
AlwI	GGATC	4 cut(s)	421, 931, 1364, 1460
AoxI	GGCC	8 cut(s)	127, 240, 261, 300, 476, 506, 629, 1305
ApeKI	GCWGC	7 cut(s)	112, 385, 388, 421, 498, 953, 1351
ApoI	RAATTY	1 cut(s)	1456
AspA2I	CCTAGG	1 cut(s)	1322
AspLEI	GCGC	6 cut(s)	403, 529, 641, 761, 773, 779
AsuHPI	GGTGA	2 cut(s)	223, 1281
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	8 cut(s)	346, 444, 602, 961, 1150, 1319, 1487, 1568
AvrII	CCTAGG	1 cut(s)	1322
BaeGI	GKGCMC	1 cut(s)	1429
BanI	GGYRCC	3 cut(s)	221, 400, 526
BanII	GRGCYC	2 cut(s)	381, 539
BauI	CACGAG	1 cut(s)	304
BbrPI	CACGTG	1 cut(s)	950
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	7 cut(s)	99, 375, 397, 408, 510, 940, 1363
BccI	CCATC	4 cut(s)	1120, 1189, 1195, 1596
BceAI	ACGGC	3 cut(s)	142, 514, 652
BcgI	CGANNNNNNTGC	4 cut(s)	203, 237, 980, 1014
BciT130I	CCWGG	3 cut(s)	475, 747, 1167
BcoDI	GTCTC	2 cut(s)	554, 988
BfaI	CTAG	3 cut(s)	612, 627, 1323
BfmI	CTRYAG	3 cut(s)	162, 389, 954
BfoI	RGCGCY	4 cut(s)	404, 530, 642, 780
BfuAI	ACCTGC	1 cut(s)	382
BlnI	CCTAGG	1 cut(s)	1322
BmcAI	AGTACT	1 cut(s)	1097
Bme1390I	CCNGG	3 cut(s)	475, 747, 1167
Bme18I	GGWCC	8 cut(s)	346, 444, 602, 961, 1150, 1319, 1487, 1568
BmrFI	CCNGG	3 cut(s)	475, 747, 1167
BmsI	GCATC	8 cut(s)	237, 1040, 1079, 1130, 1251, 1254, 1440, 1488
BoxI	GACNNNNGTC	1 cut(s)	449
BpmI	CTGGAG	4 cut(s)	565, 739, 1094, 1188
Bpu14I	TTCGAA	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	950
BsaBI	GATNNNNATC	2 cut(s)	928, 1470
BsaHI	GRCGYC	8 cut(s)	201, 401, 527, 668, 698, 737, 861, 997
BsaJI	CCNNGG	5 cut(s)	342, 437, 919, 1134, 1322
BsaWI	WCCGGW	2 cut(s)	822, 1283
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	6 cut(s)	218, 259, 381, 417, 822, 1544
Bse118I	RCCGGY	2 cut(s)	224, 238
Bse1I	ACTGG	4 cut(s)	187, 1111, 1549, 1560
Bse3DI	GCAATG	1 cut(s)	1533
Bse8I	GATNNNNATC	2 cut(s)	928, 1470
BseBI	CCWGG	3 cut(s)	475, 747, 1167
BseDI	CCNNGG	5 cut(s)	342, 437, 919, 1134, 1322
BseGI	GGATG	5 cut(s)	886, 1087, 1145, 1206, 1455
BseJI	GATNNNNATC	2 cut(s)	928, 1470
BseLI	CCNNNNNNNGG	6 cut(s)	218, 259, 381, 417, 822, 1544
BseMI	GCAATG	1 cut(s)	1533
BseMII	CTCAG	1 cut(s)	966
BseNI	ACTGG	4 cut(s)	187, 1111, 1549, 1560
BseRI	GAGGAG	2 cut(s)	341, 454
BseSI	GKGCMC	1 cut(s)	1429
BseX3I	CGGCCG	1 cut(s)	1305
BseXI	GCAGC	7 cut(s)	99, 375, 397, 408, 510, 940, 1363
BseYI	CCCAGC	3 cut(s)	252, 692, 1533
BsgI	GTGCAG	2 cut(s)	449, 1010
Bsh1236I	CGCG	2 cut(s)	344, 761
Bsh1285I	CGRYCG	1 cut(s)	1308
BshFI	GGCC	8 cut(s)	129, 242, 263, 302, 478, 508, 631, 1307
BshNI	GGYRCC	3 cut(s)	221, 400, 526
BsiEI	CGRYCG	1 cut(s)	1308
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	7 cut(s)	92, 225, 239, 382, 707, 823, 1284
BslFI	GGGAC	5 cut(s)	709, 1136, 1332, 1473, 1581
BslI	CCNNNNNNNGG	6 cut(s)	218, 259, 381, 417, 822, 1544
BsmAI	GTCTC	2 cut(s)	554, 988
BsmBI	CGTCTC	1 cut(s)	988
BsmFI	GGGAC	5 cut(s)	709, 1136, 1332, 1473, 1581
BsnI	GGCC	8 cut(s)	129, 242, 263, 302, 478, 508, 631, 1307
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	381, 539, 1429
Bsp143I	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
Bsp19I	CCATGG	1 cut(s)	1134
BspANI	GGCC	8 cut(s)	129, 242, 263, 302, 478, 508, 631, 1307
BspCNI	CTCAG	1 cut(s)	967
BspFNI	CGCG	2 cut(s)	344, 761
BspHI	TCATGA	1 cut(s)	1579
BspMAI	CTGCAG	3 cut(s)	166, 393, 958
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	4 cut(s)	421, 931, 1364, 1460
BspQI	GCTCTTC	1 cut(s)	539
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	3 cut(s)	221, 400, 526
BsrDI	GCAATG	1 cut(s)	1533
BsrFI	RCCGGY	2 cut(s)	224, 238
BsrI	ACTGG	4 cut(s)	187, 1111, 1549, 1560
BssAI	RCCGGY	2 cut(s)	224, 238
BssECI	CCNNGG	5 cut(s)	342, 437, 919, 1134, 1322
BssMI	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
BssNI	GRCGYC	8 cut(s)	201, 401, 527, 668, 698, 737, 861, 997
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	2 cut(s)	1134, 1322
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	3 cut(s)	475, 747, 1167
Bst4CI	ACNGT	2 cut(s)	221, 571
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	8 cut(s)	201, 401, 527, 668, 698, 737, 861, 997
BstBAI	YACGTR	1 cut(s)	950
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	7 cut(s)	226, 261, 496, 769, 775, 1243, 1550
BstDEI	CTNAG	1 cut(s)	975
BstDSI	CCRYGG	2 cut(s)	342, 1134
BstF5I	GGATG	5 cut(s)	886, 1087, 1145, 1206, 1455
BstFNI	CGCG	2 cut(s)	344, 761
BstH2I	RGCGCY	4 cut(s)	404, 530, 642, 780
BstHHI	GCGC	6 cut(s)	403, 529, 641, 761, 773, 779
BstKTI	GATC	7 cut(s)	182, 429, 926, 947, 1372, 1405, 1468
BstMAI	GTCTC	2 cut(s)	554, 988
BstMBI	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
BstMCI	CGRYCG	1 cut(s)	1308
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 385, 645, 662, 860, 1251
BstNI	CCWGG	3 cut(s)	475, 747, 1167
BstNSI	RCATGY	1 cut(s)	1351
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	473, 745, 1165
BstSFI	CTRYAG	3 cut(s)	162, 389, 954
BstSLI	GKGCMC	1 cut(s)	1429
BstUI	CGCG	2 cut(s)	344, 761
BstV1I	GCAGC	7 cut(s)	99, 375, 397, 408, 510, 940, 1363
BstX2I	RGATCY	1 cut(s)	1465
BstXI	CCANNNNNNTGG	1 cut(s)	1195
BstYI	RGATCY	1 cut(s)	1465
BstZI	CGGCCG	1 cut(s)	1305
BsuRI	GGCC	8 cut(s)	129, 242, 263, 302, 478, 508, 631, 1307
BtgI	CCRYGG	2 cut(s)	342, 1134
BtsCI	GGATG	5 cut(s)	886, 1087, 1145, 1206, 1455
BtsI	GCAGTG	1 cut(s)	1395
BtsIMutI	CAGTG	1 cut(s)	1395
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	7 cut(s)	226, 261, 496, 769, 775, 1243, 1550
CciI	TCATGA	1 cut(s)	1579
CciNI	GCGGCCGC	1 cut(s)	1305
CfoI	GCGC	6 cut(s)	403, 529, 641, 761, 773, 779
Cfr10I	RCCGGY	2 cut(s)	224, 238
Cfr42I	CCGCGG	1 cut(s)	345
CseI	GACGC	1 cut(s)	869
Csp6I	GTAC	4 cut(s)	196, 316, 1096, 1121
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviQI	GTAC	4 cut(s)	196, 316, 1096, 1121
DdeI	CTNAG	1 cut(s)	975
DinI	GGCGCC	2 cut(s)	402, 528
DpnI	GATC	7 cut(s)	181, 428, 925, 946, 1371, 1404, 1467
DpnII	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
EaeI	YGGCCR	2 cut(s)	127, 1305
EagI	CGGCCG	1 cut(s)	1305
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Ecl136II	GAGCTC	1 cut(s)	379
EclXI	CGGCCG	1 cut(s)	1305
Eco130I	CCWWGG	2 cut(s)	1134, 1322
Eco147I	AGGCCT	1 cut(s)	508
Eco24I	GRGCYC	2 cut(s)	381, 539
Eco47I	GGWCC	8 cut(s)	346, 444, 602, 961, 1150, 1319, 1487, 1568
Eco52I	CGGCCG	1 cut(s)	1305
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	296
Eco72I	CACGTG	1 cut(s)	950
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	1319, 1568
EcoRII	CCWGG	3 cut(s)	473, 745, 1165
EcoT14I	CCWWGG	2 cut(s)	1134, 1322
EcoT38I	GRGCYC	2 cut(s)	381, 539
EgeI	GGCGCC	2 cut(s)	402, 528
EheI	GGCGCC	2 cut(s)	402, 528
ErhI	CCWWGG	2 cut(s)	1134, 1322
Esp3I	CGTCTC	1 cut(s)	988
FaqI	GGGAC	5 cut(s)	709, 1136, 1332, 1473, 1581
FauI	CCCGC	2 cut(s)	279, 418
FauNDI	CATATG	2 cut(s)	1314, 1407
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	5 cut(s)	893, 1094, 1152, 1213, 1462
FriOI	GRGCYC	2 cut(s)	381, 539
FspBI	CTAG	3 cut(s)	612, 627, 1323
GlaI	GCGC	6 cut(s)	402, 528, 640, 760, 772, 778
GsaI	CCCAGC	3 cut(s)	256, 696, 1537
GsuI	CTGGAG	4 cut(s)	565, 739, 1094, 1188
HaeII	RGCGCY	4 cut(s)	404, 530, 642, 780
HaeIII	GGCC	8 cut(s)	129, 242, 263, 302, 478, 508, 631, 1307
HapII	CCGG	7 cut(s)	92, 225, 239, 382, 707, 823, 1284
HgaI	GACGC	1 cut(s)	869
HhaI	GCGC	6 cut(s)	403, 529, 641, 761, 773, 779
Hin1I	GRCGYC	8 cut(s)	201, 401, 527, 668, 698, 737, 861, 997
Hin6I	GCGC	6 cut(s)	401, 527, 639, 759, 771, 777
HinP1I	GCGC	6 cut(s)	401, 527, 639, 759, 771, 777
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	5 cut(s)	362, 578, 623, 868, 893
HpaII	CCGG	7 cut(s)	92, 225, 239, 382, 707, 823, 1284
HphI	GGTGA	2 cut(s)	223, 1281
Hpy166II	GTNNAC	6 cut(s)	328, 577, 964, 1289, 1393, 1414
Hpy188I	TCNGA	4 cut(s)	376, 920, 976, 1063
Hpy188III	TCNNGA	4 cut(s)	359, 454, 1001, 1580
Hpy8I	GTNNAC	6 cut(s)	328, 577, 964, 1289, 1393, 1414
HpyAV	CCTTC	2 cut(s)	346, 1018
HpyCH4III	ACNGT	2 cut(s)	221, 571
HpyCH4IV	ACGT	6 cut(s)	201, 668, 698, 737, 949, 997
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 385, 645, 662, 860, 1251
HpyF3I	CTNAG	1 cut(s)	975
HpySE526I	ACGT	6 cut(s)	201, 668, 698, 737, 949, 997
Hsp92I	GRCGYC	8 cut(s)	201, 401, 527, 668, 698, 737, 861, 997
HspAI	GCGC	6 cut(s)	401, 527, 639, 759, 771, 777
KasI	GGCGCC	2 cut(s)	400, 526
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
KspI	CCGCGG	1 cut(s)	345
Kzo9I	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
LguI	GCTCTTC	1 cut(s)	539
LmnI	GCTCC	4 cut(s)	109, 384, 662, 758
Lsp1109I	GCAGC	7 cut(s)	99, 375, 397, 408, 510, 940, 1363
LweI	GCATC	8 cut(s)	237, 1040, 1079, 1130, 1251, 1254, 1440, 1488
MaeI	CTAG	3 cut(s)	612, 627, 1323
MaeII	ACGT	6 cut(s)	201, 668, 698, 737, 949, 997
MaeIII	GTNAC	2 cut(s)	1113, 1503
MalI	GATC	7 cut(s)	181, 428, 925, 946, 1371, 1404, 1467
MboI	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
MboII	GAAGA	4 cut(s)	107, 302, 553, 556
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	1 cut(s)	1465
MhlI	GDGCHC	3 cut(s)	381, 539, 1429
MluCI	AATT	3 cut(s)	1089, 1206, 1456
Mly113I	GGCGCC	2 cut(s)	401, 527
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	701, 1041
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	2 cut(s)	516, 1600
MslI	CAYNNNNRTG	2 cut(s)	1193, 1223
MspA1I	CMGCKG	3 cut(s)	344, 388, 1304
MspI	CCGG	7 cut(s)	92, 225, 239, 382, 707, 823, 1284
MspR9I	CCNGG	3 cut(s)	475, 747, 1167
MunI	CAATTG	1 cut(s)	1089
MvaI	CCWGG	3 cut(s)	475, 747, 1167
MvnI	CGCG	2 cut(s)	344, 761
MwoI	GCNNNNNNNGC	6 cut(s)	118, 385, 645, 662, 860, 1251
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	2 cut(s)	401, 527
NcoI	CCATGG	1 cut(s)	1134
NdeI	CATATG	2 cut(s)	1314, 1407
NdeII	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
NgoMIV	GCCGGC	1 cut(s)	224
NmeAIII	GCCGAG	4 cut(s)	462, 805, 889, 1578
NotI	GCGGCCGC	1 cut(s)	1305
NspI	RCATGY	1 cut(s)	1351
NspV	TTCGAA	1 cut(s)	24
PagI	TCATGA	1 cut(s)	1579
PceI	AGGCCT	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	7 cut(s)	30, 132, 210, 422, 707, 737, 852
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	4 cut(s)	362, 623, 868, 893
PflFI	GACNNNGTC	1 cut(s)	739
PfoI	TCCNGGA	1 cut(s)	1165
PleI	GAGTC	1 cut(s)	572
PluTI	GGCGCC	2 cut(s)	404, 530
PmaCI	CACGTG	1 cut(s)	950
PmlI	CACGTG	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	572
Ppu21I	YACGTR	1 cut(s)	950
PpuMI	RGGWCCY	2 cut(s)	1319, 1568
PshAI	GACNNNNGTC	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	381
Psp5II	RGGWCCY	2 cut(s)	1319, 1568
Psp6I	CCWGG	3 cut(s)	473, 745, 1165
PspCI	CACGTG	1 cut(s)	950
PspFI	CCCAGC	3 cut(s)	252, 692, 1533
PspGI	CCWGG	3 cut(s)	473, 745, 1165
PspPPI	RGGWCCY	2 cut(s)	1319, 1568
PstI	CTGCAG	3 cut(s)	166, 393, 958
PsuI	RGATCY	1 cut(s)	1465
PsyI	GACNNNGTC	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	4 cut(s)	197, 317, 1097, 1122
RsaNI	GTAC	4 cut(s)	196, 316, 1096, 1121
RseI	CAYNNNNRTG	2 cut(s)	1193, 1223
SacI	GAGCTC	1 cut(s)	381
SacII	CCGCGG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	516, 1600
Sau3AI	GATC	7 cut(s)	179, 426, 923, 944, 1369, 1402, 1465
ScaI	AGTACT	1 cut(s)	1097
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	3 cut(s)	475, 747, 1167
SduI	GDGCHC	3 cut(s)	381, 539, 1429
SfaNI	GCATC	8 cut(s)	237, 1040, 1079, 1130, 1251, 1254, 1440, 1488
SfcI	CTRYAG	3 cut(s)	162, 389, 954
SfoI	GGCGCC	2 cut(s)	402, 528
Sfr303I	CCGCGG	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	345
SgrDI	CGTCGACG	1 cut(s)	326
SinI	GGWCC	8 cut(s)	346, 444, 602, 961, 1150, 1319, 1487, 1568
SmiMI	CAYNNNNRTG	2 cut(s)	1193, 1223
Sse9I	AATT	3 cut(s)	1089, 1206, 1456
SseBI	AGGCCT	1 cut(s)	508
SspDI	GGCGCC	2 cut(s)	400, 526
SspMI	CTAG	3 cut(s)	612, 627, 1323
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	508
StyD4I	CCNGG	3 cut(s)	473, 745, 1165
StyI	CCWWGG	2 cut(s)	1134, 1322
TaaI	ACNGT	2 cut(s)	221, 571
TaiI	ACGT	6 cut(s)	204, 671, 701, 740, 952, 1000
TaqI	TCGA	7 cut(s)	24, 327, 416, 539, 926, 1000, 1048
TaqII	GACCGA	2 cut(s)	461, 1475
TasI	AATT	3 cut(s)	1089, 1206, 1456
TatI	WGTACW	2 cut(s)	1095, 1120
TfiI	GAWTC	4 cut(s)	362, 623, 868, 893
Tru1I	TTAA	2 cut(s)	516, 1600
Tru9I	TTAA	2 cut(s)	516, 1600
TscAI	CASTG	1 cut(s)	1395
TseI	GCWGC	7 cut(s)	112, 385, 388, 421, 498, 953, 1351
TspDTI	ATGAA	6 cut(s)	17, 309, 1029, 1037, 1098, 1596
TspGWI	ACGGA	1 cut(s)	1462
TspRI	CASTG	1 cut(s)	1395
Tth111I	GACNNNGTC	1 cut(s)	739
VpaK11BI	GGWCC	8 cut(s)	346, 444, 602, 961, 1150, 1319, 1487, 1568
XapI	RAATTY	1 cut(s)	1456
XceI	RCATGY	1 cut(s)	1351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1541
XmaJI	CCTAGG	1 cut(s)	1322
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	3 cut(s)	612, 627, 1323
ZraI	GACGTC	5 cut(s)	202, 669, 699, 738, 998
ZrmI	AGTACT	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.