RLG00000012635

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001638
Physical Location & Seq
Forward (+)
20727451 .. 20731425
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012635

Sequence Viewer

Length: 1431 bp
ATGAATTACCGCGTCCCCGAATTCGAAATGGAGGGAGATTACTCACTTCCGGCATCTCCTCCTCGCGCGAGAAAATCCACCCTGCCGGAAGAGGCGGTCATGGAGCTGCTATGGCAGAACGGACAGGTAGTGATGCAGAGCCAAACCCAGAGGTCGGGACACAAGAAGTCCAAATACGACGCTGTTATTCCCGAACATACCAGGCCGCCGGTAAATCAACCTCAAAACCCGCAGCTGTTTATGCAGGAAGACGAAATGGCCGCCTGGCTACAGTGCCCTCTCGGCGACGACGATCCTTTCTGCGCCGAACTTCTTTATACTGATTCCAGAAACGCTCCATCTAACAACACGGCCGCCAACCCTCCACCGATTTCTCCGCCGCCTCCCCCTCGGCCACCGATCCATCCTCCGCCGCCGGCGCCGAGGAGGATCGAGCTCCCGAACTTCCTCCACTTCTCCAGGATGACCAACAACAACAACAACAATACGTCTCGGTATGAATCCGCGGCGGCGGAGCCGTCGGAGTCGAAGAGCGTGGATTCGAGGCTCGACGCCTCCAACAACAATGCTAGCGGCGGCGGCGGCGGAAGAGGACTTGCCGCCACCGCTACGATGTCGTTCGGTGCCGCCGCCTCAGCCGTGAAAGACGCTGTGACGTGCGAGACGTCGCTGACGTCGTCCACCGGAGACTCCAGCGCGAGCGGCAGCCTAAGCGCCGAGCAGATGTCGATTCAGCAGAAGCCGCCGCCGCCTCCTCCGCCGCAGGCGGCGGAGGATCGGAAGCGCAAAGGGAGAGTGGCCGACGACGCCGAGTGTCAGAGCGAGGATGTGGAGTTGGAATCTGGGAGTGGCAAGAAGCAAACCCGGGGATCGAGTTCTACTAAGAGATCACGAGCTGCGGAGGTCCACAATCTCTCCGAAAGGAGACGTCGAGATAGGATCAATGAGAAGATGAGGTCTTTGCAAGAATTAATACCTCGTTGCAATAAGTCGGACAAAGCGTCAATGCTGGATGAAGCGATTGAGTATTTGAAATCACTTCAGTTGCAAGTACAGATGATGTCCATGGGATGCGGCATGGTCCCTATGATGTTTCCTGGTGTTCAGCAGTATATGCCAATGGGGATGGGAATGGGAATGGGCATGGGCATGCGAATGGGAATGGAAATGGGAATGAGTCGGCCTGTGATGCCATTTTCGAATGTGTTAGCTGGTTCCACCATGCCAACAGCACCTGCAACAGCTCATATGGGACCGAGTACTTCACTCCCCAGCAAATGCGGATGCAACTACAGCAGAATCAAGCTATGGCTCAGCCAAGTCCTAGCAAGCCGAGTTCCAGTATGGGACCTGAAAATCAAGAGAGCCATCAATGAGGTTCAAATTTTGGCGGATCGATCACAGAAGGCATTTGCCTGCGAAGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
HLH

Protein Analysis

477

Amino Acids

51.94

Weight (kDa)

8.3

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 301 - 348 5.9e-13 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 307 - 350 1.4e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1243
AatII GACGTC 3 cut(s) 668, 677, 931
Acc36I ACCTGC 1 cut(s) 1243
AccB1I GGYRCC 2 cut(s) 418, 623
AccBSI CCGCTC 1 cut(s) 702
AccII CGCG 5 cut(s) 12, 66, 68, 506, 698
AclWI GGATC 7 cut(s) 287, 394, 437, 783, 877, 947, 1401
AcoI YGGCCR 4 cut(s) 258, 351, 392, 798
AcsI RAATTY 2 cut(s) 20, 1383
AcuI CTGAAG 1 cut(s) 1025
AcyI GRCGYC 6 cut(s) 419, 552, 665, 674, 807, 928
AfaI GTAC 2 cut(s) 1053, 1261
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 1033, 1382
AhdI GACNNNNNGTC 1 cut(s) 1000
AjiI CACGTC 1 cut(s) 657
AjnI CCWGG 4 cut(s) 200, 263, 458, 1096
AluBI AGCT 7 cut(s) 106, 235, 436, 896, 1211, 1244, 1306
AluI AGCT 7 cut(s) 106, 235, 436, 896, 1211, 1244, 1306
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 4 cut(s) 495, 656, 681, 919
AlwI GGATC 7 cut(s) 287, 394, 437, 783, 877, 947, 1401
AlwNI CAGNNNCTG 1 cut(s) 1235
Ama87I CYCGRG 1 cut(s) 864
AoxI GGCC 6 cut(s) 203, 258, 351, 392, 798, 1181
ApeKI GCWGC 4 cut(s) 106, 232, 705, 896
ApoI RAATTY 2 cut(s) 20, 1383
AseI ATTAAT 1 cut(s) 971
AspLEI GCGC 6 cut(s) 68, 305, 421, 698, 716, 786
AspS9I GGNCC 4 cut(s) 904, 1081, 1253, 1348
AsuC2I CCSGG 2 cut(s) 865, 866
AsuII TTCGAA 2 cut(s) 24, 1199
AsuNHI GCTAGC 1 cut(s) 569
AvaI CYCGRG 1 cut(s) 864
AvaII GGWCC 4 cut(s) 904, 1081, 1253, 1348
BaeGI GKGCMC 1 cut(s) 278
BanI GGYRCC 2 cut(s) 418, 623
BanII GRGCYC 1 cut(s) 438
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 438
BbvCI CCTCAGC 1 cut(s) 634
BbvI GCAGC 4 cut(s) 93, 244, 717, 883
BccI CCATC 4 cut(s) 346, 411, 1120, 1376
BceAI ACGGC 3 cut(s) 366, 502, 623
BciT130I CCWGG 4 cut(s) 202, 265, 460, 1098
BcnI CCSGG 2 cut(s) 865, 866
BcoDI GTCTC 4 cut(s) 495, 656, 681, 919
BfaI CTAG 2 cut(s) 570, 1325
BfmI CTRYAG 2 cut(s) 269, 1291
BfoI RGCGCY 2 cut(s) 422, 717
BfuAI ACCTGC 1 cut(s) 1243
BglI GCCNNNNNGGC 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 1313
BmcAI AGTACT 1 cut(s) 1261
Bme1390I CCNGG 6 cut(s) 202, 265, 460, 865, 866, 1098
Bme18I GGWCC 4 cut(s) 904, 1081, 1253, 1348
BmeRI GACNNNNNGTC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 864
BmgBI CACGTC 1 cut(s) 657
BmgT120I GGNCC 4 cut(s) 904, 1081, 1253, 1348
BmiI GGNNCC 7 cut(s) 420, 516, 625, 1083, 1216, 1254, 1349
BmrFI CCNGG 6 cut(s) 202, 265, 460, 865, 866, 1098
BmsI GCATC 5 cut(s) 62, 123, 1061, 1179, 1274
BmtI GCTAGC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 255
BpmI CTGGAG 2 cut(s) 442, 676
Bpu10I CCTNAGC 2 cut(s) 634, 710
Bpu1102I GCTNAGC 1 cut(s) 1313
Bpu14I TTCGAA 2 cut(s) 24, 1199
BpuMI CCSGG 2 cut(s) 865, 866
Bsa29I ATCGAT 1 cut(s) 1396
BsaHI GRCGYC 6 cut(s) 419, 552, 665, 674, 807, 928
BsaJI CCNNGG 6 cut(s) 389, 422, 504, 864, 865, 1065
BsaWI WCCGGW 1 cut(s) 683
BsaXI ACNNNNNCTCC 2 cut(s) 899, 929
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 2 cut(s) 208, 415
Bse1I ACTGG 1 cut(s) 1340
BseBI CCWGG 4 cut(s) 202, 265, 460, 1098
BseCI ATCGAT 1 cut(s) 1396
BseDI CCNNGG 6 cut(s) 389, 422, 504, 864, 865, 1065
BseGI GGATG 7 cut(s) 403, 468, 832, 1018, 1076, 1131, 1289
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 648, 1327
BseNI ACTGG 1 cut(s) 1340
BseRI GAGGAG 4 cut(s) 48, 51, 439, 744
BseSI GKGCMC 1 cut(s) 278
BseX3I CGGCCG 1 cut(s) 351
BseXI GCAGC 4 cut(s) 93, 244, 717, 883
BseYI CCCAGC 1 cut(s) 1271
Bsh1236I CGCG 5 cut(s) 12, 66, 68, 506, 698
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 6 cut(s) 205, 260, 353, 394, 800, 1183
BshNI GGYRCC 2 cut(s) 418, 623
BshVI ATCGAT 1 cut(s) 1396
BsiEI CGRYCG 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 864
BsiSI CCGG 6 cut(s) 50, 86, 209, 416, 684, 865
BslFI GGGAC 4 cut(s) 171, 1067, 1266, 1361
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 4 cut(s) 495, 656, 681, 919
BsmBI CGTCTC 3 cut(s) 495, 656, 919
BsmFI GGGAC 4 cut(s) 171, 1067, 1266, 1361
BsnI GGCC 6 cut(s) 205, 260, 353, 394, 800, 1183
BsoBI CYCGRG 1 cut(s) 864
Bsp119I TTCGAA 2 cut(s) 24, 1199
Bsp1286I GDGCHC 2 cut(s) 278, 438
Bsp143I GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
Bsp1720I GCTNAGC 1 cut(s) 1313
Bsp19I CCATGG 1 cut(s) 1065
BspANI GGCC 6 cut(s) 205, 260, 353, 394, 800, 1183
BspCNI CTCAG 2 cut(s) 647, 1326
BspDI ATCGAT 1 cut(s) 1396
BspFNI CGCG 5 cut(s) 12, 66, 68, 506, 698
BspLI GGNNCC 7 cut(s) 420, 516, 625, 1083, 1216, 1254, 1349
BspMI ACCTGC 1 cut(s) 1243
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 7 cut(s) 287, 394, 437, 783, 877, 947, 1401
BspQI GCTCTTC 1 cut(s) 524
BspT104I TTCGAA 2 cut(s) 24, 1199
BspT107I GGYRCC 2 cut(s) 418, 623
BsrBI CCGCTC 1 cut(s) 702
BsrFI RCCGGY 2 cut(s) 208, 415
BsrI ACTGG 1 cut(s) 1340
BssAI RCCGGY 2 cut(s) 208, 415
BssECI CCNNGG 6 cut(s) 389, 422, 504, 864, 865, 1065
BssMI GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
BssNI GRCGYC 6 cut(s) 419, 552, 665, 674, 807, 928
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 1065
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 4 cut(s) 202, 265, 460, 1098
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 3 cut(s) 84, 524, 583
BstACI GRCGYC 6 cut(s) 419, 552, 665, 674, 807, 928
BstAPI GCANNNNNTGC 1 cut(s) 1114
BstBI TTCGAA 2 cut(s) 24, 1199
BstC8I GCNNGC 7 cut(s) 417, 571, 700, 765, 1151, 1330, 1417
BstDEI CTNAG 4 cut(s) 634, 710, 882, 1313
BstDSI CCRYGG 2 cut(s) 504, 1065
BstF5I GGATG 7 cut(s) 403, 468, 832, 1018, 1076, 1131, 1289
BstFNI CGCG 5 cut(s) 12, 66, 68, 506, 698
BstH2I RGCGCY 2 cut(s) 422, 717
BstHHI GCGC 6 cut(s) 68, 305, 421, 698, 716, 786
BstKTI GATC 9 cut(s) 295, 402, 432, 778, 872, 890, 942, 1396, 1400
BstMAI GTCTC 4 cut(s) 495, 656, 681, 919
BstMBI GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
BstMCI CGRYCG 1 cut(s) 354
BstNI CCWGG 4 cut(s) 202, 265, 460, 1098
BstNSI RCATGY 1 cut(s) 1153
BstSCI CCNGG 6 cut(s) 200, 263, 458, 863, 864, 1096
BstSFI CTRYAG 2 cut(s) 269, 1291
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 5 cut(s) 12, 66, 68, 506, 698
BstV1I GCAGC 4 cut(s) 93, 244, 717, 883
BstV2I GAAGAC 1 cut(s) 255
BstZI CGGCCG 1 cut(s) 351
Bsu15I ATCGAT 1 cut(s) 1396
BsuRI GGCC 6 cut(s) 205, 260, 353, 394, 800, 1183
BsuTUI ATCGAT 1 cut(s) 1396
BtgI CCRYGG 2 cut(s) 504, 1065
BtrI CACGTC 1 cut(s) 657
BtsCI GGATG 7 cut(s) 403, 468, 832, 1018, 1076, 1131, 1289
BtsIMutI CAGTG 1 cut(s) 278
BveI ACCTGC 1 cut(s) 1243
Cac8I GCNNGC 7 cut(s) 417, 571, 700, 765, 1151, 1330, 1417
CaiI CAGNNNCTG 1 cut(s) 1235
CfoI GCGC 6 cut(s) 68, 305, 421, 698, 716, 786
Cfr10I RCCGGY 2 cut(s) 208, 415
Cfr13I GGNCC 4 cut(s) 904, 1081, 1253, 1348
Cfr42I CCGCGG 1 cut(s) 507
Cfr9I CCCGGG 1 cut(s) 864
ClaI ATCGAT 1 cut(s) 1396
CseI GACGC 5 cut(s) 188, 560, 656, 815, 990
Csp6I GTAC 2 cut(s) 1052, 1260
CviAII CATG 6 cut(s) 100, 1066, 1078, 1144, 1150, 1222
CviQI GTAC 2 cut(s) 1052, 1260
DdeI CTNAG 4 cut(s) 634, 710, 882, 1313
DinI GGCGCC 1 cut(s) 420
DpnI GATC 9 cut(s) 294, 401, 431, 777, 871, 889, 941, 1395, 1399
DpnII GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
DriI GACNNNNNGTC 1 cut(s) 1000
EaeI YGGCCR 4 cut(s) 258, 351, 392, 798
EagI CGGCCG 1 cut(s) 351
Eam1104I CTCTTC 3 cut(s) 84, 524, 583
Eam1105I GACNNNNNGTC 1 cut(s) 1000
EarI CTCTTC 3 cut(s) 84, 524, 583
EciI GGCGGA 7 cut(s) 366, 399, 527, 600, 747, 785, 1406
Ecl136II GAGCTC 1 cut(s) 436
EclXI CGGCCG 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 1065
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 4 cut(s) 904, 1081, 1253, 1348
Eco52I CGGCCG 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 1025
Eco88I CYCGRG 1 cut(s) 864
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 1348
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 4 cut(s) 200, 263, 458, 1096
EcoT14I CCWWGG 1 cut(s) 1065
EcoT38I GRGCYC 1 cut(s) 438
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 1065
Esp3I CGTCTC 3 cut(s) 495, 656, 919
FaeI CATG 6 cut(s) 103, 1069, 1081, 1147, 1153, 1225
FaqI GGGAC 4 cut(s) 171, 1067, 1266, 1361
FatI CATG 6 cut(s) 99, 1065, 1077, 1143, 1149, 1221
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 1248
FokI GGATG 7 cut(s) 390, 475, 839, 1025, 1083, 1138, 1296
FriOI GRGCYC 1 cut(s) 438
FspBI CTAG 2 cut(s) 570, 1325
GlaI GCGC 6 cut(s) 67, 304, 420, 697, 715, 785
GsaI CCCAGC 1 cut(s) 1275
GsuI CTGGAG 2 cut(s) 442, 676
HaeII RGCGCY 2 cut(s) 422, 717
HaeIII GGCC 6 cut(s) 205, 260, 353, 394, 800, 1183
HapII CCGG 6 cut(s) 50, 86, 209, 416, 684, 865
HgaI GACGC 5 cut(s) 188, 560, 656, 815, 990
HhaI GCGC 6 cut(s) 68, 305, 421, 698, 716, 786
Hin1I GRCGYC 6 cut(s) 419, 552, 665, 674, 807, 928
Hin1II CATG 6 cut(s) 103, 1069, 1081, 1147, 1153, 1225
Hin6I GCGC 6 cut(s) 66, 303, 419, 696, 714, 784
HinP1I GCGC 6 cut(s) 66, 303, 419, 696, 714, 784
HinfI GANTC 9 cut(s) 323, 500, 524, 539, 689, 730, 839, 1177, 1299
HpaII CCGG 6 cut(s) 50, 86, 209, 416, 684, 865
Hpy166II GTNNAC 2 cut(s) 681, 907
Hpy188I TCNGA 5 cut(s) 523, 780, 819, 919, 994
Hpy188III TCNNGA 7 cut(s) 156, 191, 327, 439, 891, 932, 1360
Hpy8I GTNNAC 2 cut(s) 681, 907
HpyAV CCTTC 1 cut(s) 1399
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 5 cut(s) 488, 656, 665, 674, 928
HpyCH4V TGCA 7 cut(s) 136, 244, 964, 984, 1048, 1238, 1287
HpyF3I CTNAG 4 cut(s) 634, 710, 882, 1313
HpySE526I ACGT 5 cut(s) 488, 656, 665, 674, 928
Hsp92I GRCGYC 6 cut(s) 419, 552, 665, 674, 807, 928
Hsp92II CATG 6 cut(s) 103, 1069, 1081, 1147, 1153, 1225
HspAI GCGC 6 cut(s) 66, 303, 419, 696, 714, 784
KasI GGCGCC 1 cut(s) 418
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
KspI CCGCGG 1 cut(s) 507
Kzo9I GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 4 cut(s) 103, 340, 441, 514
Lsp1109I GCAGC 4 cut(s) 93, 244, 717, 883
LweI GCATC 5 cut(s) 62, 123, 1061, 1179, 1274
MaeI CTAG 2 cut(s) 570, 1325
MaeII ACGT 5 cut(s) 488, 656, 665, 674, 928
MaeIII GTNAC 1 cut(s) 652
MalI GATC 9 cut(s) 294, 401, 431, 777, 871, 889, 941, 1395, 1399
MbiI CCGCTC 1 cut(s) 702
MboI GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
MboII GAAGA 5 cut(s) 101, 260, 541, 600, 961
MhlI GDGCHC 2 cut(s) 278, 438
MluCI AATT 4 cut(s) 4, 20, 968, 1383
Mly113I GGCGCC 1 cut(s) 419
MlyI GAGTC 3 cut(s) 533, 683, 1186
MmeI TCCRAC 4 cut(s) 501, 582, 816, 972
MreI CGCCGGCG 1 cut(s) 415
MroNI GCCGGC 1 cut(s) 415
MseI TTAA 1 cut(s) 971
MslI CAYNNNNRTG 2 cut(s) 1148, 1154
MspA1I CMGCKG 2 cut(s) 235, 506
MspI CCGG 6 cut(s) 50, 86, 209, 416, 684, 865
MspR9I CCNGG 6 cut(s) 202, 265, 460, 865, 866, 1098
MvaI CCWGG 4 cut(s) 202, 265, 460, 1098
MvnI CGCG 5 cut(s) 12, 66, 68, 506, 698
NaeI GCCGGC 1 cut(s) 417
NarI GGCGCC 1 cut(s) 419
NciI CCSGG 2 cut(s) 865, 866
NcoI CCATGG 1 cut(s) 1065
NdeI CATATG 1 cut(s) 1248
NdeII GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
NgoMIV GCCGGC 1 cut(s) 415
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 6 cut(s) 103, 1069, 1081, 1147, 1153, 1225
NlaIV GGNNCC 7 cut(s) 420, 516, 625, 1083, 1216, 1254, 1349
NmeAIII GCCGAG 6 cut(s) 261, 370, 447, 742, 835, 1358
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 1 cut(s) 1153
NspV TTCGAA 2 cut(s) 24, 1199
PaeI GCATGC 1 cut(s) 1153
PaqCI CACCTGC 1 cut(s) 1243
PciSI GCTCTTC 1 cut(s) 524
PcsI WCGNNNNNNNCGW 5 cut(s) 288, 662, 671, 674, 998
PdiI GCCGGC 1 cut(s) 417
PfeI GAWTC 6 cut(s) 323, 500, 539, 730, 839, 1299
PflFI GACNNNGTC 1 cut(s) 676
PfoI TCCNGGA 1 cut(s) 458
PleI GAGTC 3 cut(s) 532, 683, 1185
PluTI GGCGCC 1 cut(s) 422
PpsI GAGTC 3 cut(s) 532, 683, 1185
PpuMI RGGWCCY 1 cut(s) 1348
PshBI ATTAAT 1 cut(s) 971
Psp124BI GAGCTC 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 1348
Psp6I CCWGG 4 cut(s) 200, 263, 458, 1096
PspFI CCCAGC 1 cut(s) 1271
PspGI CCWGG 4 cut(s) 200, 263, 458, 1096
PspN4I GGNNCC 7 cut(s) 420, 516, 625, 1083, 1216, 1254, 1349
PspPI GGNCC 4 cut(s) 904, 1081, 1253, 1348
PspPPI RGGWCCY 1 cut(s) 1348
PstNI CAGNNNCTG 1 cut(s) 1235
PsyI GACNNNGTC 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 2 cut(s) 1053, 1261
RsaNI GTAC 2 cut(s) 1052, 1260
RseI CAYNNNNRTG 2 cut(s) 1148, 1154
SacI GAGCTC 1 cut(s) 438
SacII CCGCGG 1 cut(s) 507
SapI GCTCTTC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 971
Sau3AI GATC 9 cut(s) 292, 399, 429, 775, 869, 887, 939, 1393, 1397
Sau96I GGNCC 4 cut(s) 904, 1081, 1253, 1348
ScaI AGTACT 1 cut(s) 1261
SchI GAGTC 3 cut(s) 533, 683, 1186
ScrFI CCNGG 6 cut(s) 202, 265, 460, 865, 866, 1098
SduI GDGCHC 2 cut(s) 278, 438
SfaNI GCATC 5 cut(s) 62, 123, 1061, 1179, 1274
SfcI CTRYAG 2 cut(s) 269, 1291
SfoI GGCGCC 1 cut(s) 420
Sfr303I CCGCGG 1 cut(s) 507
SfuI TTCGAA 2 cut(s) 24, 1199
SgrAI CRCCGGYG 1 cut(s) 415
SgrBI CCGCGG 1 cut(s) 507
SinI GGWCC 4 cut(s) 904, 1081, 1253, 1348
SmaI CCCGGG 1 cut(s) 866
SmiMI CAYNNNNRTG 2 cut(s) 1148, 1154
SphI GCATGC 1 cut(s) 1153
Sse9I AATT 4 cut(s) 4, 20, 968, 1383
SspDI GGCGCC 1 cut(s) 418
SspMI CTAG 2 cut(s) 570, 1325
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 6 cut(s) 200, 263, 458, 863, 864, 1096
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 5 cut(s) 491, 659, 668, 677, 931
TaqII GACCGA 1 cut(s) 1270
TasI AATT 4 cut(s) 4, 20, 968, 1383
TatI WGTACW 2 cut(s) 1051, 1259
TfiI GAWTC 6 cut(s) 323, 500, 539, 730, 839, 1299
Tru1I TTAA 1 cut(s) 971
Tru9I TTAA 1 cut(s) 971
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 4 cut(s) 106, 232, 705, 896
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 3 cut(s) 17, 513, 1029
TspGWI ACGGA 1 cut(s) 135
TspMI CCCGGG 1 cut(s) 864
TspRI CASTG 1 cut(s) 278
Tth111I GACNNNGTC 1 cut(s) 676
VpaK11BI GGWCC 4 cut(s) 904, 1081, 1253, 1348
VspI ATTAAT 1 cut(s) 971
XapI RAATTY 2 cut(s) 20, 1383
XceI RCATGY 1 cut(s) 1153
XmaI CCCGGG 1 cut(s) 864
XspI CTAG 2 cut(s) 570, 1325
ZraI GACGTC 3 cut(s) 666, 675, 929
ZrmI AGTACT 1 cut(s) 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.