RchiOBHm_Chr6g0285491

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001638
Physical Location & Seq
Reverse (-)
48829170 .. 48833566
4397 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25608

Sequence Viewer

Length: 1533 bp
ATGAATTACCGCGTCCCCGAATTCGAAATGGAGGGAGATTACTCACTTCCGGCATCTTCTCCTCGCTCTAGAAAATCCACCATGCCAGAAGATGAGGTCATGGAACTGCTATGGCAGAACGGACAGGTGGTGATGCAGAGCCAAACCCAGAGGTCGGGACATAAGAAGTCCAAATACGACGCTGTTATTCCCGAACATACCAGACCTCCGGCAGCGCAACCGCCGCCGGTGAATCAACCTCAAAACCCGCAGCTGTTTATGCAGGAAGACGAAATGGCCGCCTGGCTACAGTGCCCTCTCGGCGACGACGATCCTTTCTGCGCCGAACTTCTTTATACCGATTCCAGAAACGCTCAATCCAACAACACCGCCGCCAACCTTCCACCGATTTCTCCGCCTCCCCCTCGGCTGCCGATCCATCCTCCGCCGCCGGCGCCGAGGAGGACCGAGCTCCCGAACTTCCTCCACTTCTCCAGGATGACCAACAACAACAACAACAAGTCTCGGTATGAATCCGAGGCGGTGGGGCCGTCGGGGTCGAAGAGCGTGGATTCGAGGTTCGACGCCTCCAGCAACAATGCTAGCGGCGGCGGAAGAGGACTTGCCGCCACCCGTACGATGTCGTTCGGTGCCGCCGCCTCAGCCGGGAAAGACGCCGTGACGTGCGAGACGTCGCTGACGTCGTCTACCGGAGACTCCAGCGCGAGCGGCAGCCTAAGCGCCGAGCAGATGTCGATTCAGAAGCCGCCGCCTCCGCCGCTGCCGGTGGAGGATCGGAAGCGCAAAGAGAGAGTGGCCGACGACGCGGAGTGTCAGAGCGAGGATGTGGAGTTTGAATCTGGGAGTGGAAAGAAGCAGACCCGGGGATCGAGTTCTACTAAGAGATCACGAGCTGCGGAGGTCCACAATCTCTCCGAAAGGAGACGTCGAGATAGGATCAATGAGAAGATGAGGTCTTTGCAAGAATTAATACCTCGTTGCAATAAGTCGGACAAAGCGTCAATGCTGGATGAAGCGATTGAGTATTTGAAATCACTTCAGTTGCAAGTACAGATGATGTCCATGGGATGCGGCATGGTCCCTATGATGTTTCCTGGTGTTCAGCAGTATATGCCGATGGGAATGGGAATGGGAATGGGAATGGGCATGGGCATGGGAATGGAAATGGGAATGGGAATGAGTCGGCCTATGATGCCATTTCCGAATGTGTTAGCTGGTTCCACCATGCCAACAGCACCTGCAACAGCTCATATGGGACCGAGGTTCCCTTTGCCACCATTTCGAATGCAGACTATGCTTCCCAATGATCCTAGCAGAGTCCAAGCAACAAATCAGTCTGAACATATGTTAAACTCGCTTGGGACACAAAATCAGAACCAATCACGAGTAACAAATTTTGCGGATCCTTACCAGCACTACTTCACTCCCCAGCAAATGCGGATGCAACTACAGCAGAATCAAGCCATGCCTCAGCCAAGTTCTAGCAAGCCGAGTTCCAGTATGGGACCTGAAAATCAAGAGAGTCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
HLH

Protein Analysis

510

Amino Acids

56.21

Weight (kDa)

6.78

Isoelectric Point (pI)

70.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 300 - 347 6.5e-13 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 306 - 349 1.5e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1246
AatII GACGTC 3 cut(s) 674, 683, 928
Acc36I ACCTGC 1 cut(s) 1246
AccB1I GGYRCC 2 cut(s) 433, 629
AccBSI CCGCTC 1 cut(s) 708
AccI GTMKAC 1 cut(s) 686
AccII CGCG 3 cut(s) 12, 704, 806
AclWI GGATC 8 cut(s) 305, 409, 780, 874, 944, 1301, 1397, 1410
AcoI YGGCCR 2 cut(s) 276, 795
AcsI RAATTY 2 cut(s) 20, 1393
AcuI CTGAAG 1 cut(s) 1022
AcyI GRCGYC 6 cut(s) 434, 564, 654, 671, 680, 925
AfaI GTAC 2 cut(s) 616, 1050
AfiI CCNNNNNNNGG 2 cut(s) 154, 645
AgsI TTSAA 2 cut(s) 836, 1030
AhdI GACNNNNNGTC 1 cut(s) 997
AjiI CACGTC 1 cut(s) 663
AjnI CCWGG 3 cut(s) 281, 473, 1093
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
AluBI AGCT 5 cut(s) 253, 451, 893, 1214, 1247
AluI AGCT 5 cut(s) 253, 451, 893, 1214, 1247
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 4 cut(s) 507, 662, 687, 916
AlwI GGATC 8 cut(s) 305, 409, 780, 874, 944, 1301, 1397, 1410
AlwNI CAGNNNCTG 1 cut(s) 1238
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 4 cut(s) 276, 527, 795, 1184
ApeKI GCWGC 6 cut(s) 212, 250, 409, 711, 760, 893
ApoI RAATTY 2 cut(s) 20, 1393
AseI ATTAAT 1 cut(s) 968
AspLEI GCGC 6 cut(s) 217, 323, 436, 704, 722, 783
AspS9I GGNCC 6 cut(s) 444, 527, 901, 1078, 1256, 1505
AsuC2I CCSGG 3 cut(s) 646, 862, 863
AsuHPI GGTGA 2 cut(s) 142, 241
AsuII TTCGAA 2 cut(s) 24, 1282
AsuNHI GCTAGC 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 861
AvaII GGWCC 5 cut(s) 444, 901, 1078, 1256, 1505
BaeGI GKGCMC 1 cut(s) 296
BamHI GGATCC 1 cut(s) 1402
BanI GGYRCC 2 cut(s) 433, 629
BanII GRGCYC 1 cut(s) 453
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BauI CACGAG 2 cut(s) 888, 1383
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 453
BbvCI CCTCAGC 2 cut(s) 640, 1470
BbvI GCAGC 6 cut(s) 224, 262, 396, 723, 747, 880
BccI CCATC 2 cut(s) 426, 1111
BceAI ACGGC 2 cut(s) 514, 641
BciT130I CCWGG 3 cut(s) 283, 475, 1095
BcnI CCSGG 3 cut(s) 646, 862, 863
BcoDI GTCTC 4 cut(s) 507, 662, 687, 916
BfaI CTAG 4 cut(s) 69, 582, 1311, 1482
BfmI CTRYAG 2 cut(s) 287, 1448
BfoI RGCGCY 2 cut(s) 437, 723
BfuAI ACCTGC 1 cut(s) 1246
BglI GCCNNNNNGGC 1 cut(s) 300
Bme1390I CCNGG 6 cut(s) 283, 475, 646, 862, 863, 1095
Bme18I GGWCC 5 cut(s) 444, 901, 1078, 1256, 1505
BmeRI GACNNNNNGTC 1 cut(s) 997
BmeT110I CYCGRG 1 cut(s) 861
BmgBI CACGTC 1 cut(s) 663
BmgT120I GGNCC 6 cut(s) 444, 527, 901, 1078, 1256, 1505
BmiI GGNNCC 9 cut(s) 435, 528, 631, 1080, 1219, 1257, 1265, 1404, 1506
BmrFI CCNGG 6 cut(s) 283, 475, 646, 862, 863, 1095
BmsI GCATC 5 cut(s) 62, 123, 1058, 1182, 1431
BmtI GCTAGC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 3 cut(s) 457, 553, 682
Bpu10I CCTNAGC 3 cut(s) 640, 716, 1470
Bpu14I TTCGAA 2 cut(s) 24, 1282
BpuMI CCSGG 3 cut(s) 646, 862, 863
BsaHI GRCGYC 6 cut(s) 434, 564, 654, 671, 680, 925
BsaJI CCNNGG 7 cut(s) 404, 437, 516, 861, 862, 1062, 1259
BsaWI WCCGGW 1 cut(s) 689
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 896, 926
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 645
Bse118I RCCGGY 3 cut(s) 226, 430, 763
Bse1I ACTGG 1 cut(s) 1497
BseBI CCWGG 3 cut(s) 283, 475, 1095
BseDI CCNNGG 7 cut(s) 404, 437, 516, 861, 862, 1062, 1259
BseGI GGATG 6 cut(s) 418, 483, 829, 1015, 1073, 1446
BseLI CCNNNNNNNGG 2 cut(s) 154, 645
BseMII CTCAG 2 cut(s) 654, 1484
BseNI ACTGG 1 cut(s) 1497
BseRI GAGGAG 2 cut(s) 51, 454
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 6 cut(s) 224, 262, 396, 723, 747, 880
BseYI CCCAGC 1 cut(s) 1428
Bsh1236I CGCG 3 cut(s) 12, 704, 806
BshFI GGCC 4 cut(s) 278, 529, 797, 1186
BshNI GGYRCC 2 cut(s) 433, 629
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 8 cut(s) 50, 209, 227, 431, 645, 690, 764, 862
BsiWI CGTACG 1 cut(s) 614
BslFI GGGAC 5 cut(s) 171, 1064, 1269, 1375, 1518
BslI CCNNNNNNNGG 2 cut(s) 154, 645
BsmAI GTCTC 4 cut(s) 507, 662, 687, 916
BsmBI CGTCTC 2 cut(s) 662, 916
BsmFI GGGAC 5 cut(s) 171, 1064, 1269, 1375, 1518
BsmI GAATGC 1 cut(s) 1290
BsnI GGCC 4 cut(s) 278, 529, 797, 1186
BsoBI CYCGRG 1 cut(s) 861
Bsp119I TTCGAA 2 cut(s) 24, 1282
Bsp1286I GDGCHC 2 cut(s) 296, 453
Bsp143I GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
Bsp19I CCATGG 1 cut(s) 1062
BspANI GGCC 4 cut(s) 278, 529, 797, 1186
BspCNI CTCAG 2 cut(s) 653, 1483
BspFNI CGCG 3 cut(s) 12, 704, 806
BspLI GGNNCC 9 cut(s) 435, 528, 631, 1080, 1219, 1257, 1265, 1404, 1506
BspMI ACCTGC 1 cut(s) 1246
BspOI GCTAGC 1 cut(s) 585
BspPI GGATC 8 cut(s) 305, 409, 780, 874, 944, 1301, 1397, 1410
BspQI GCTCTTC 1 cut(s) 536
BspT104I TTCGAA 2 cut(s) 24, 1282
BspT107I GGYRCC 2 cut(s) 433, 629
BsrBI CCGCTC 1 cut(s) 708
BsrFI RCCGGY 3 cut(s) 226, 430, 763
BsrI ACTGG 1 cut(s) 1497
BssAI RCCGGY 3 cut(s) 226, 430, 763
BssECI CCNNGG 7 cut(s) 404, 437, 516, 861, 862, 1062, 1259
BssMI GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
BssNI GRCGYC 6 cut(s) 434, 564, 654, 671, 680, 925
BssSI CACGAG 2 cut(s) 888, 1383
BssT1I CCWWGG 1 cut(s) 1062
Bst2BI CACGAG 2 cut(s) 888, 1383
Bst2UI CCWGG 3 cut(s) 283, 475, 1095
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 536, 589
BstACI GRCGYC 6 cut(s) 434, 564, 654, 671, 680, 925
BstAPI GCANNNNNTGC 2 cut(s) 1111, 1294
BstBI TTCGAA 2 cut(s) 24, 1282
BstC8I GCNNGC 4 cut(s) 432, 583, 706, 1487
BstDEI CTNAG 4 cut(s) 640, 716, 879, 1470
BstDSI CCRYGG 1 cut(s) 1062
BstF5I GGATG 6 cut(s) 418, 483, 829, 1015, 1073, 1446
BstFNI CGCG 3 cut(s) 12, 704, 806
BstH2I RGCGCY 2 cut(s) 437, 723
BstHHI GCGC 6 cut(s) 217, 323, 436, 704, 722, 783
BstKTI GATC 8 cut(s) 313, 417, 775, 869, 887, 939, 1309, 1405
BstMAI GTCTC 4 cut(s) 507, 662, 687, 916
BstMBI GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
BstNI CCWGG 3 cut(s) 283, 475, 1095
BstSCI CCNGG 6 cut(s) 281, 473, 644, 860, 861, 1093
BstSFI CTRYAG 2 cut(s) 287, 1448
BstSLI GKGCMC 1 cut(s) 296
BstUI CGCG 3 cut(s) 12, 704, 806
BstV1I GCAGC 6 cut(s) 224, 262, 396, 723, 747, 880
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 1402
BstYI RGATCY 1 cut(s) 1402
BsuRI GGCC 4 cut(s) 278, 529, 797, 1186
BtgI CCRYGG 1 cut(s) 1062
BtrI CACGTC 1 cut(s) 663
BtsCI GGATG 6 cut(s) 418, 483, 829, 1015, 1073, 1446
BtsIMutI CAGTG 1 cut(s) 296
BveI ACCTGC 1 cut(s) 1246
Cac8I GCNNGC 4 cut(s) 432, 583, 706, 1487
CaiI CAGNNNCTG 1 cut(s) 1238
CfoI GCGC 6 cut(s) 217, 323, 436, 704, 722, 783
Cfr10I RCCGGY 3 cut(s) 226, 430, 763
Cfr13I GGNCC 6 cut(s) 444, 527, 901, 1078, 1256, 1505
Cfr9I CCCGGG 1 cut(s) 861
CseI GACGC 5 cut(s) 188, 572, 662, 812, 987
Csp6I GTAC 2 cut(s) 615, 1049
CviAII CATG 8 cut(s) 82, 100, 1063, 1075, 1147, 1153, 1225, 1465
CviQI GTAC 2 cut(s) 615, 1049
DdeI CTNAG 4 cut(s) 640, 716, 879, 1470
DinI GGCGCC 1 cut(s) 435
DpnI GATC 8 cut(s) 312, 416, 774, 868, 886, 938, 1308, 1404
DpnII GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
DriI GACNNNNNGTC 1 cut(s) 997
EaeI YGGCCR 2 cut(s) 276, 795
Eam1104I CTCTTC 2 cut(s) 536, 589
Eam1105I GACNNNNNGTC 1 cut(s) 997
EarI CTCTTC 2 cut(s) 536, 589
EciI GGCGGA 4 cut(s) 384, 414, 606, 744
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 1062
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 5 cut(s) 444, 901, 1078, 1256, 1505
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 1022
Eco88I CYCGRG 1 cut(s) 861
EcoICRI GAGCTC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 1505
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 281, 473, 1093
EcoT14I CCWWGG 1 cut(s) 1062
EcoT38I GRGCYC 1 cut(s) 453
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 1062
Esp3I CGTCTC 2 cut(s) 662, 916
FaeI CATG 8 cut(s) 85, 103, 1066, 1078, 1150, 1156, 1228, 1468
FaqI GGGAC 5 cut(s) 171, 1064, 1269, 1375, 1518
FatI CATG 8 cut(s) 81, 99, 1062, 1074, 1146, 1152, 1224, 1464
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 2 cut(s) 1251, 1344
FblI GTMKAC 1 cut(s) 686
FokI GGATG 6 cut(s) 405, 490, 836, 1022, 1080, 1453
FriOI GRGCYC 1 cut(s) 453
FspBI CTAG 4 cut(s) 69, 582, 1311, 1482
GlaI GCGC 6 cut(s) 216, 322, 435, 703, 721, 782
GsaI CCCAGC 1 cut(s) 1432
GsuI CTGGAG 3 cut(s) 457, 553, 682
HaeII RGCGCY 2 cut(s) 437, 723
HaeIII GGCC 4 cut(s) 278, 529, 797, 1186
HapII CCGG 8 cut(s) 50, 209, 227, 431, 645, 690, 764, 862
HgaI GACGC 5 cut(s) 188, 572, 662, 812, 987
HhaI GCGC 6 cut(s) 217, 323, 436, 704, 722, 783
Hin1I GRCGYC 6 cut(s) 434, 564, 654, 671, 680, 925
Hin1II CATG 8 cut(s) 85, 103, 1066, 1078, 1150, 1156, 1228, 1468
Hin6I GCGC 6 cut(s) 215, 321, 434, 702, 720, 781
HinP1I GCGC 6 cut(s) 215, 321, 434, 702, 720, 781
HpaII CCGG 8 cut(s) 50, 209, 227, 431, 645, 690, 764, 862
HphI GGTGA 2 cut(s) 142, 241
Hpy166II GTNNAC 2 cut(s) 687, 904
Hpy188I TCNGA 9 cut(s) 517, 741, 777, 816, 916, 991, 1203, 1339, 1374
Hpy188III TCNNGA 9 cut(s) 69, 156, 191, 345, 454, 888, 929, 1383, 1517
Hpy8I GTNNAC 2 cut(s) 687, 904
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 4 cut(s) 662, 671, 680, 925
HpyCH4V TGCA 8 cut(s) 136, 262, 961, 981, 1045, 1241, 1288, 1444
HpyF3I CTNAG 4 cut(s) 640, 716, 879, 1470
HpySE526I ACGT 4 cut(s) 662, 671, 680, 925
Hsp92I GRCGYC 6 cut(s) 434, 564, 654, 671, 680, 925
Hsp92II CATG 8 cut(s) 85, 103, 1066, 1078, 1150, 1156, 1228, 1468
HspAI GCGC 6 cut(s) 215, 321, 434, 702, 720, 781
KasI GGCGCC 1 cut(s) 433
KroI GCCGGC 1 cut(s) 430
KroNI GCCGGC 1 cut(s) 432
Kzo9I GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
LguI GCTCTTC 1 cut(s) 536
LmnI GCTCC 1 cut(s) 456
Lsp1109I GCAGC 6 cut(s) 224, 262, 396, 723, 747, 880
LweI GCATC 5 cut(s) 62, 123, 1058, 1182, 1431
MaeI CTAG 4 cut(s) 69, 582, 1311, 1482
MaeII ACGT 4 cut(s) 662, 671, 680, 925
MaeIII GTNAC 2 cut(s) 658, 1387
MalI GATC 8 cut(s) 312, 416, 774, 868, 886, 938, 1308, 1404
MbiI CCGCTC 1 cut(s) 708
MboI GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
MboII GAAGA 6 cut(s) 48, 101, 278, 553, 606, 958
MflI RGATCY 1 cut(s) 1402
MhlI GDGCHC 2 cut(s) 296, 453
MluCI AATT 4 cut(s) 4, 20, 965, 1393
Mly113I GGCGCC 1 cut(s) 434
MlyI GAGTC 4 cut(s) 689, 1189, 1326, 1531
MmeI TCCRAC 2 cut(s) 384, 969
MreI CGCCGGCG 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 430
MseI TTAA 2 cut(s) 968, 1349
MslI CAYNNNNRTG 2 cut(s) 1151, 1157
MspA1I CMGCKG 2 cut(s) 253, 760
MspI CCGG 8 cut(s) 50, 209, 227, 431, 645, 690, 764, 862
MspR9I CCNGG 6 cut(s) 283, 475, 646, 862, 863, 1095
Mva1269I GAATGC 1 cut(s) 1290
MvaI CCWGG 3 cut(s) 283, 475, 1095
MvnI CGCG 3 cut(s) 12, 704, 806
NaeI GCCGGC 1 cut(s) 432
NarI GGCGCC 1 cut(s) 434
NciI CCSGG 3 cut(s) 646, 862, 863
NcoI CCATGG 1 cut(s) 1062
NdeI CATATG 2 cut(s) 1251, 1344
NdeII GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
NgoMIV GCCGGC 1 cut(s) 430
NheI GCTAGC 1 cut(s) 581
NlaIII CATG 8 cut(s) 85, 103, 1066, 1078, 1150, 1156, 1228, 1468
NlaIV GGNNCC 9 cut(s) 435, 528, 631, 1080, 1219, 1257, 1265, 1404, 1506
NmeAIII GCCGAG 5 cut(s) 279, 385, 462, 748, 1515
NmuCI GTSAC 1 cut(s) 658
NspV TTCGAA 2 cut(s) 24, 1282
PaqCI CACCTGC 1 cut(s) 1246
PciSI GCTCTTC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 5 cut(s) 306, 668, 677, 680, 995
PctI GAATGC 1 cut(s) 1290
PdiI GCCGGC 1 cut(s) 432
PfeI GAWTC 7 cut(s) 232, 341, 512, 551, 736, 836, 1456
Pfl23II CGTACG 1 cut(s) 614
PflFI GACNNNGTC 1 cut(s) 682
PfoI TCCNGGA 1 cut(s) 473
PleI GAGTC 4 cut(s) 689, 1188, 1325, 1530
PluTI GGCGCC 1 cut(s) 437
PpsI GAGTC 4 cut(s) 689, 1188, 1325, 1530
PpuMI RGGWCCY 1 cut(s) 1505
PshBI ATTAAT 1 cut(s) 968
Psp124BI GAGCTC 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 1505
Psp6I CCWGG 3 cut(s) 281, 473, 1093
PspFI CCCAGC 1 cut(s) 1428
PspGI CCWGG 3 cut(s) 281, 473, 1093
PspLI CGTACG 1 cut(s) 614
PspN4I GGNNCC 9 cut(s) 435, 528, 631, 1080, 1219, 1257, 1265, 1404, 1506
PspPI GGNCC 6 cut(s) 444, 527, 901, 1078, 1256, 1505
PspPPI RGGWCCY 1 cut(s) 1505
PstNI CAGNNNCTG 1 cut(s) 1238
PsuI RGATCY 1 cut(s) 1402
PsyI GACNNNGTC 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 2 cut(s) 616, 1050
RsaNI GTAC 2 cut(s) 615, 1049
RseI CAYNNNNRTG 2 cut(s) 1151, 1157
SacI GAGCTC 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 2 cut(s) 968, 1349
Sau3AI GATC 8 cut(s) 310, 414, 772, 866, 884, 936, 1306, 1402
Sau96I GGNCC 6 cut(s) 444, 527, 901, 1078, 1256, 1505
SchI GAGTC 4 cut(s) 689, 1189, 1326, 1531
ScrFI CCNGG 6 cut(s) 283, 475, 646, 862, 863, 1095
SduI GDGCHC 2 cut(s) 296, 453
SfaNI GCATC 5 cut(s) 62, 123, 1058, 1182, 1431
SfcI CTRYAG 2 cut(s) 287, 1448
SfoI GGCGCC 1 cut(s) 435
SfuI TTCGAA 2 cut(s) 24, 1282
SgrAI CRCCGGYG 2 cut(s) 226, 430
SinI GGWCC 5 cut(s) 444, 901, 1078, 1256, 1505
SmaI CCCGGG 1 cut(s) 863
SmiMI CAYNNNNRTG 2 cut(s) 1151, 1157
Sse9I AATT 4 cut(s) 4, 20, 965, 1393
SspDI GGCGCC 1 cut(s) 433
SspMI CTAG 4 cut(s) 69, 582, 1311, 1482
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 6 cut(s) 281, 473, 644, 860, 861, 1093
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 4 cut(s) 665, 674, 683, 928
TaqI TCGA 8 cut(s) 24, 539, 554, 561, 734, 869, 928, 1282
TaqII GACCGA 2 cut(s) 461, 1273
TasI AATT 4 cut(s) 4, 20, 965, 1393
TatI WGTACW 1 cut(s) 1048
TfiI GAWTC 7 cut(s) 232, 341, 512, 551, 736, 836, 1456
Tru1I TTAA 2 cut(s) 968, 1349
Tru9I TTAA 2 cut(s) 968, 1349
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 6 cut(s) 212, 250, 409, 711, 760, 893
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 3 cut(s) 17, 525, 1026
TspGWI ACGGA 1 cut(s) 135
TspMI CCCGGG 1 cut(s) 861
TspRI CASTG 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 682
VpaK11BI GGWCC 5 cut(s) 444, 901, 1078, 1256, 1505
VspI ATTAAT 1 cut(s) 968
XapI RAATTY 2 cut(s) 20, 1393
XbaI TCTAGA 1 cut(s) 68
XmaI CCCGGG 1 cut(s) 861
XmiI GTMKAC 1 cut(s) 686
XspI CTAG 4 cut(s) 69, 582, 1311, 1482
ZraI GACGTC 3 cut(s) 672, 681, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.