AT4G28800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001638
Physical Location & Seq
Forward (+)
14221632 .. 14224116
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28800.2

Sequence Viewer

Length: 1356 bp
ATGCAATTTGATGAGTCTGATGCTAGGGTTTGGATTTGGTTTGAAATTAGGCGTGAAGATGATATAGTGGAGCTTTTATGGCAAAGCGGCCAAGTAGTTGGAACCAACCAAACACATAGACAATCCTACGATCCTCCTCCCATTCTCCGCGGCAGCGGAAGTGGCAGAGGAGAAGAAAATGCTCCCCTTTCACAACCTCCGCCTCACCTGCATCAGCAAAATCTCTTCATTCAAGAAGGCGAAATGTATTCGTGGCTACACCATTCTTACCGCCAAAACTATTTCTGCTCAGAACTTCTCAACTCCACTCCGGCTACTCACCCGCAAAGTTCCATCTCTCTGGCACCACGTCAGACTATCGCCACGAGAAGGGCGGAAAACTTTATGAACTTCTCGTGGCTAAGAGGGAACATATTTACCGGCGGTAGAGTTGATGAAGCTGGACCGTCGTTTTCGGTGGTAAGAGAATCGATGCAGGTAGGCTCGAACACGACCCCCCCTTCTTCTTCTGCCACTGAATCATGTGTAATACCAGCTACAGAGGGCACCGCGAGTCGAGTGTCGGGAACTTTGGCAGCTCATGATCTTGGTCGGAAGGGAAAGGCGGTGGCGGTTGAGGCGGCCGGAACACCATCTTCAGGAGTGTGCAAGGCCGAAACAGAGCCGGTTCAGATACAACCAGCAACGGAGTCGAAGCTAAAAGCGAGAGAAGAAACCCATGGAACTGAAGAAGCTCGTGGTTCAACGTCTAGAAAGAGATCACGAACTGCAGAAATGCATAACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGATGAAGACTCTGCAACAACTCATTCCTCGCTGCAACAAGTCTACTAAAGTTTCAACGCTGGATGATGCTATCGAGTACGTCAAATCGTTACAGAGCCAAATACAAATGATGTCGACGGGACAGGGTATGATGTCGCCAATGATGAATGCCGGGAATACGCAACAGTTCATGCCCCATATGGCCATGGATATGAACCGACCTCCTCCATTCATACCTTTCCCCGGCACATCTTTTCCTATGCCGGCTCAAATGGCAGGTGTAGGTCCATCATATCCAGCACCGCGCTACCCTTTTCCCAACATTCAGACCTTTGACCCATCCAGAGTCCGTTTACCAAGCCCGCAGCCTAACCCGGTGTCGAACCAGCCTCAGTTTCCGGCTTACATGAATCCCTATAGCCAGTTTGCTGGTCCCCACCAGTTGCAACAACCTCCTCCTCCTCCATTTCAGGGTCAAACAACATCACAACTGAGTTCCGGGCAGGCAAGTAGTAGCAAGGAACCTGAGGATCAGGAGAACCAACCAACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
HLH

Protein Analysis

451

Amino Acids

49.92

Weight (kDa)

7.19

Isoelectric Point (pI)

71.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 270 - 317 1e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 216, 1067
Acc36I ACCTGC 3 cut(s) 216, 466, 1067
AccB1I GGYRCC 2 cut(s) 343, 545
AccI GTMKAC 2 cut(s) 863, 935
AccII CGCG 3 cut(s) 150, 551, 1105
AclWI GGATC 2 cut(s) 125, 1338
AcoI YGGCCR 3 cut(s) 88, 621, 1002
AcuI CTGAAG 2 cut(s) 621, 747
AfaI GTAC 1 cut(s) 899
AfiI CCNNNNNNNGG 4 cut(s) 369, 638, 1043, 1271
AgsI TTSAA 4 cut(s) 44, 233, 744, 876
AjiI CACGTC 1 cut(s) 350
AluBI AGCT 7 cut(s) 73, 440, 536, 578, 697, 734, 1352
AluI AGCT 7 cut(s) 73, 440, 536, 578, 697, 734, 1352
AlwI GGATC 2 cut(s) 125, 1338
AoxI GGCC 4 cut(s) 88, 621, 651, 1002
ApeKI GCWGC 4 cut(s) 153, 575, 852, 1165
AspLEI GCGC 1 cut(s) 1107
AspS9I GGNCC 3 cut(s) 443, 1085, 1232
AsuC2I CCSGG 4 cut(s) 973, 1044, 1175, 1300
AsuHPI GGTGA 2 cut(s) 197, 311
AvaII GGWCC 3 cut(s) 443, 1085, 1232
AxyI CCTNAGG 1 cut(s) 1326
BaeGI GKGCMC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 2 cut(s) 343, 545
BauI CACGAG 3 cut(s) 364, 394, 735
BbsI GAAGAC 1 cut(s) 833
BbvI GCAGC 4 cut(s) 165, 587, 839, 1177
BccI CCATC 4 cut(s) 341, 640, 1096, 1147
BcgI CGANNNNNNTGC 2 cut(s) 672, 706
BcnI CCSGG 4 cut(s) 973, 1044, 1175, 1300
BfaI CTAG 2 cut(s) 24, 750
BfmI CTRYAG 3 cut(s) 537, 768, 1216
BfuAI ACCTGC 3 cut(s) 216, 466, 1067
BisI GCNGC 7 cut(s) 88, 151, 154, 576, 621, 853, 1166
BlsI GCNGC 7 cut(s) 89, 152, 155, 577, 622, 854, 1167
Bme1390I CCNGG 4 cut(s) 973, 1044, 1175, 1300
Bme18I GGWCC 3 cut(s) 443, 1085, 1232
BmgBI CACGTC 1 cut(s) 350
BmgT120I GGNCC 3 cut(s) 443, 1085, 1232
BmiI GGNNCC 5 cut(s) 103, 345, 547, 1234, 1323
BmrFI CCNGG 4 cut(s) 973, 1044, 1175, 1300
BmsI GCATC 4 cut(s) 10, 220, 462, 877
BpiI GAAGAC 1 cut(s) 833
BpuMI CCSGG 4 cut(s) 973, 1044, 1175, 1300
Bsa29I ATCGAT 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 148, 718, 1005, 1042
Bsc4I CCNNNNNNNGG 4 cut(s) 369, 638, 1043, 1271
Bse118I RCCGGY 3 cut(s) 419, 664, 1063
Bse1I ACTGG 2 cut(s) 1222, 1240
Bse21I CCTNAGG 1 cut(s) 1326
BseCI ATCGAT 1 cut(s) 470
BseDI CCNNGG 4 cut(s) 148, 718, 1005, 1042
BseGI GGATG 2 cut(s) 889, 1139
BseLI CCNNNNNNNGG 4 cut(s) 369, 638, 1043, 1271
BseMII CTCAG 4 cut(s) 303, 1205, 1283, 1317
BseNI ACTGG 2 cut(s) 1222, 1240
BseRI GAGGAG 6 cut(s) 126, 183, 1014, 1245, 1248, 1251
BseSI GKGCMC 1 cut(s) 548
BseX3I CGGCCG 1 cut(s) 621
BseXI GCAGC 4 cut(s) 165, 587, 839, 1177
Bsh1236I CGCG 3 cut(s) 150, 551, 1105
Bsh1285I CGRYCG 1 cut(s) 624
BshFI GGCC 4 cut(s) 90, 623, 653, 1004
BshNI GGYRCC 2 cut(s) 343, 545
BshVI ATCGAT 1 cut(s) 470
BsiEI CGRYCG 1 cut(s) 624
BslFI GGGAC 2 cut(s) 954, 1218
BslI CCNNNNNNNGG 4 cut(s) 369, 638, 1043, 1271
BsmFI GGGAC 2 cut(s) 954, 1218
BsmI GAATGC 1 cut(s) 973
BsnI GGCC 4 cut(s) 90, 623, 653, 1004
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 5 cut(s) 130, 583, 758, 810, 1330
Bsp19I CCATGG 2 cut(s) 718, 1005
BspANI GGCC 4 cut(s) 90, 623, 653, 1004
BspCNI CTCAG 4 cut(s) 302, 1204, 1284, 1318
BspDI ATCGAT 1 cut(s) 470
BspFNI CGCG 3 cut(s) 150, 551, 1105
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 5 cut(s) 103, 345, 547, 1234, 1323
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 3 cut(s) 216, 466, 1067
BspPI GGATC 2 cut(s) 125, 1338
BspT107I GGYRCC 2 cut(s) 343, 545
BsrFI RCCGGY 3 cut(s) 419, 664, 1063
BsrI ACTGG 2 cut(s) 1222, 1240
BssAI RCCGGY 3 cut(s) 419, 664, 1063
BssECI CCNNGG 4 cut(s) 148, 718, 1005, 1042
BssMI GATC 5 cut(s) 130, 583, 758, 810, 1330
BssSI CACGAG 3 cut(s) 364, 394, 735
BssT1I CCWWGG 2 cut(s) 718, 1005
Bst2BI CACGAG 3 cut(s) 364, 394, 735
Bst4CI ACNGT 2 cut(s) 447, 987
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 1065, 1163, 1305
BstDEI CTNAG 6 cut(s) 289, 401, 1191, 1292, 1326, 1353
BstDSI CCRYGG 3 cut(s) 148, 718, 1005
BstF5I GGATG 2 cut(s) 889, 1139
BstFNI CGCG 3 cut(s) 150, 551, 1105
BstHHI GCGC 1 cut(s) 1107
BstKTI GATC 5 cut(s) 133, 586, 761, 813, 1333
BstMBI GATC 5 cut(s) 130, 583, 758, 810, 1330
BstMCI CGRYCG 1 cut(s) 624
BstMWI GCNNNNNNNGC 5 cut(s) 79, 162, 208, 617, 1073
BstSCI CCNGG 4 cut(s) 971, 1042, 1173, 1298
BstSFI CTRYAG 3 cut(s) 537, 768, 1216
BstSLI GKGCMC 1 cut(s) 548
BstUI CGCG 3 cut(s) 150, 551, 1105
BstV1I GCAGC 4 cut(s) 165, 587, 839, 1177
BstV2I GAAGAC 1 cut(s) 833
BstXI CCANNNNNNTGG 3 cut(s) 98, 340, 1229
BstZI CGGCCG 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 470
Bsu36I CCTNAGG 1 cut(s) 1326
BsuRI GGCC 4 cut(s) 90, 623, 653, 1004
BsuTUI ATCGAT 1 cut(s) 470
BtgI CCRYGG 3 cut(s) 148, 718, 1005
BtrI CACGTC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 889, 1139
BtsIMutI CAGTG 1 cut(s) 513
BveI ACCTGC 3 cut(s) 216, 466, 1067
Cac8I GCNNGC 3 cut(s) 1065, 1163, 1305
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 1107
Cfr10I RCCGGY 3 cut(s) 419, 664, 1063
Cfr13I GGNCC 3 cut(s) 443, 1085, 1232
Cfr42I CCGCGG 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 470
Csp6I GTAC 1 cut(s) 898
CviAII CATG 6 cut(s) 522, 581, 719, 991, 1006, 1207
CviQI GTAC 1 cut(s) 898
DdeI CTNAG 6 cut(s) 289, 401, 1191, 1292, 1326, 1353
DpnI GATC 5 cut(s) 132, 585, 760, 812, 1332
DpnII GATC 5 cut(s) 130, 583, 758, 810, 1330
EaeI YGGCCR 3 cut(s) 88, 621, 1002
EagI CGGCCG 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 2 cut(s) 189, 389
EclXI CGGCCG 1 cut(s) 621
Eco130I CCWWGG 2 cut(s) 718, 1005
Eco47I GGWCC 3 cut(s) 443, 1085, 1232
Eco52I CGGCCG 1 cut(s) 621
Eco57I CTGAAG 2 cut(s) 621, 747
Eco81I CCTNAGG 1 cut(s) 1326
EcoT14I CCWWGG 2 cut(s) 718, 1005
EcoT22I ATGCAT 1 cut(s) 780
ErhI CCWWGG 2 cut(s) 718, 1005
FaeI CATG 6 cut(s) 525, 584, 722, 994, 1009, 1210
FaqI GGGAC 2 cut(s) 954, 1218
FatI CATG 6 cut(s) 521, 580, 718, 990, 1005, 1206
FauI CCCGC 2 cut(s) 330, 1170
FauNDI CATATG 1 cut(s) 999
FblI GTMKAC 2 cut(s) 863, 935
Fnu4HI GCNGC 7 cut(s) 88, 151, 154, 576, 621, 853, 1166
FokI GGATG 2 cut(s) 896, 1126
Fsp4HI GCNGC 7 cut(s) 88, 151, 154, 576, 621, 853, 1166
FspBI CTAG 2 cut(s) 24, 750
GlaI GCGC 1 cut(s) 1106
GluI GCNGC 7 cut(s) 88, 151, 154, 576, 621, 853, 1166
HaeIII GGCC 4 cut(s) 90, 623, 653, 1004
HhaI GCGC 1 cut(s) 1107
Hin1II CATG 6 cut(s) 525, 584, 722, 994, 1009, 1210
Hin6I GCGC 1 cut(s) 1105
HinP1I GCGC 1 cut(s) 1105
HincII GTYRAC 1 cut(s) 936
HindII GTYRAC 1 cut(s) 936
HinfI GANTC 8 cut(s) 14, 467, 518, 553, 689, 829, 1146, 1210
HphI GGTGA 2 cut(s) 197, 311
Hpy166II GTNNAC 3 cut(s) 864, 936, 1154
Hpy188I TCNGA 6 cut(s) 19, 292, 354, 594, 672, 1128
Hpy188III TCNNGA 8 cut(s) 233, 564, 581, 639, 750, 762, 1143, 1334
Hpy8I GTNNAC 3 cut(s) 864, 936, 1154
Hpy99I CGWCG 2 cut(s) 451, 940
HpyAV CCTTC 5 cut(s) 230, 363, 510, 589, 792
HpyCH4III ACNGT 2 cut(s) 447, 987
HpyCH4IV ACGT 3 cut(s) 349, 746, 900
HpyCH4V TGCA 9 cut(s) 4, 211, 475, 648, 770, 778, 835, 855, 1246
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 162, 208, 617, 1073
HpyF3I CTNAG 6 cut(s) 289, 401, 1191, 1292, 1326, 1353
HpySE526I ACGT 3 cut(s) 349, 746, 900
Hsp92II CATG 6 cut(s) 525, 584, 722, 994, 1009, 1210
HspAI GCGC 1 cut(s) 1105
KroI GCCGGC 1 cut(s) 1063
KroNI GCCGGC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 5 cut(s) 130, 583, 758, 810, 1330
LmnI GCTCC 2 cut(s) 70, 187
Lsp1109I GCAGC 4 cut(s) 165, 587, 839, 1177
LweI GCATC 4 cut(s) 10, 220, 462, 877
MaeI CTAG 2 cut(s) 24, 750
MaeII ACGT 3 cut(s) 349, 746, 900
MaeIII GTNAC 1 cut(s) 909
MalI GATC 5 cut(s) 132, 585, 760, 812, 1332
MboI GATC 5 cut(s) 130, 583, 758, 810, 1330
MhlI GDGCHC 1 cut(s) 548
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 2 cut(s) 5, 45
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 5 cut(s) 23, 562, 698, 823, 1155
MmeI TCCRAC 2 cut(s) 79, 572
Mox20I TGGCCA 1 cut(s) 1004
Mph1103I ATGCAT 1 cut(s) 780
MroNI GCCGGC 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 1004
MslI CAYNNNNRTG 1 cut(s) 1010
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 2 cut(s) 150, 156
MspR9I CCNGG 4 cut(s) 973, 1044, 1175, 1300
Mva1269I GAATGC 1 cut(s) 973
MvnI CGCG 3 cut(s) 150, 551, 1105
MwoI GCNNNNNNNGC 5 cut(s) 79, 162, 208, 617, 1073
NaeI GCCGGC 1 cut(s) 1065
NciI CCSGG 4 cut(s) 973, 1044, 1175, 1300
NcoI CCATGG 2 cut(s) 718, 1005
NdeI CATATG 1 cut(s) 999
NdeII GATC 5 cut(s) 130, 583, 758, 810, 1330
NgoMIV GCCGGC 1 cut(s) 1063
NlaIII CATG 6 cut(s) 525, 584, 722, 994, 1009, 1210
NlaIV GGNNCC 5 cut(s) 103, 345, 547, 1234, 1323
NsiI ATGCAT 1 cut(s) 780
PagI TCATGA 1 cut(s) 580
PaqCI CACCTGC 2 cut(s) 216, 1067
PctI GAATGC 1 cut(s) 973
PdiI GCCGGC 1 cut(s) 1065
PfeI GAWTC 3 cut(s) 467, 518, 1210
PkrI GCNGC 7 cut(s) 89, 152, 155, 577, 622, 854, 1167
PleI GAGTC 5 cut(s) 22, 561, 697, 823, 1154
PpsI GAGTC 5 cut(s) 22, 561, 697, 823, 1154
PspN4I GGNNCC 5 cut(s) 103, 345, 547, 1234, 1323
PspPI GGNCC 3 cut(s) 443, 1085, 1232
PstI CTGCAG 1 cut(s) 772
RsaI GTAC 1 cut(s) 899
RsaNI GTAC 1 cut(s) 898
RseI CAYNNNNRTG 1 cut(s) 1010
SacII CCGCGG 1 cut(s) 151
SalI GTCGAC 1 cut(s) 934
SatI GCNGC 7 cut(s) 88, 151, 154, 576, 621, 853, 1166
Sau3AI GATC 5 cut(s) 130, 583, 758, 810, 1330
Sau96I GGNCC 3 cut(s) 443, 1085, 1232
SchI GAGTC 5 cut(s) 23, 562, 698, 823, 1155
ScrFI CCNGG 4 cut(s) 973, 1044, 1175, 1300
SduI GDGCHC 1 cut(s) 548
SfaNI GCATC 4 cut(s) 10, 220, 462, 877
SfcI CTRYAG 3 cut(s) 537, 768, 1216
Sfr303I CCGCGG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 151
SinI GGWCC 3 cut(s) 443, 1085, 1232
SmiMI CAYNNNNRTG 1 cut(s) 1010
Sse9I AATT 2 cut(s) 5, 45
SspMI CTAG 2 cut(s) 24, 750
StyD4I CCNGG 4 cut(s) 971, 1042, 1173, 1298
StyI CCWWGG 2 cut(s) 718, 1005
TaaI ACNGT 2 cut(s) 447, 987
TaiI ACGT 3 cut(s) 352, 749, 903
TaqI TCGA 7 cut(s) 470, 485, 556, 692, 894, 935, 1181
TasI AATT 2 cut(s) 5, 45
TauI GCSGC 3 cut(s) 90, 153, 623
TfiI GAWTC 3 cut(s) 467, 518, 1210
TscAI CASTG 1 cut(s) 520
TseI GCWGC 4 cut(s) 153, 575, 852, 1165
TspDTI ATGAA 9 cut(s) 217, 401, 450, 839, 979, 980, 1021, 1028, 1223
TspGWI ACGGA 2 cut(s) 701, 1139
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 3 cut(s) 443, 1085, 1232
XbaI TCTAGA 1 cut(s) 749
XmiI GTMKAC 2 cut(s) 863, 935
XspI CTAG 2 cut(s) 24, 750
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.