Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001638

Physical Location & Seq

Genomic Coordinates Reverse (-)

46659601 .. 46662519

Gene Structure 2919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG288800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGAATTACCGCGTCCCCGAATTCGAAATGGAGGGAGATTACTCACTTCCGGCATCTTCTCCTCGCTCTAGAAAATCCACCATGCCAGAAGATGAGGTCATGGAACTGCTATGGCAGAACGGACAGGTGGTGATGCAGAGCCAAACCCAGAGGTCGGGACATAAGAAGTCCAAATACGACGCTGTTATTCCCGAACATACCAGACCTCCGGCAGCGCAACCGCCGCCGGTGAATCAACCTCAAAACCCGCAGCTGTTTATGCAGGAAGACGAAATGGCCGCCTGGCTACAGTGCCCTCTCGGCGACGACGATCCTTTCTGCGCCGAACTTCTTTATACCGATTCCAGAAACGCTCAATCCAACAACACCGCCGCCAACCTTCCACCGATTTCTCCGCCTCCCCCTCGGCTGCCGATCCATCCTCCGCCGCCGGCGCCGAGGAGGACCGAGCTCCCGAACTTCCTCCACTTCTCCAGGATGACCAACAACAACAACAACAAGTCTCGGTATGAATCCGAGGCGGTGGGGCCGTCGGGGTCGAAGAGCGTGGATTCGAGGTTCGACGCCTCCAGCAACAATGCTAGCGGCGGCGGAAGAGGACTTGCCGCCACCCGTACGATGTCGTTCGGTGCCGCCGCCTCAGCCGGGAAAGACGCCGTGACGTGCGAGACGTCGCTGACGTCGTCTACCGGAGACTCCAGCGCGAGCGGCAGCCTAAGCGCCGAGCAGATGTCGATTCAGAAGCCGCCGCCTCCGCCGCTGCCGGTGGAGGATCGGAAGCGCAAAGAGAGAGTGGCCGACGACGCGGAGTGTCAGAGCGAGGATGTGGAGTTTGAATCTGGGAGTGGAAAGAAGCAGACCCGGGGATCGAGTTCTACTAAGAGATCACGAGCTGCGGAGGTCCACAATCTCTCCGAAAGGAGACGTCGAGATAGGATCAATGAGAAGATGAGGTCTTTGCAAGAATTAATACCTCGTTGCAATAAGTCGGACAAAGCGTCAATGCTGGATGAAGCGATTGAGTATTTGAAATCACTTCAGTTGCAAGTACAGATGATGTCCATGGGATGCGGCATGGTCCCTATGATGTTTCCTGGTGTTCAGCAGTATATGCCGATGGGAATGGGAATGGGAATGGGAATGGGCATGGGCATGGGAATGGAAATGGGAATGAGTCGGCCTATGATGCCATTTCCGAATGTGTTAGCTGGTTCCACCATGCCAACAGCACCTGCAACAGCTCATATGGGACCGAGGTTCCCTTTGCCACCATTTCGAATGCAGACTATGCTTCCCAATGATCCTAGCAGAGTCCAAGCAACAAATCAGTCTGAACATATGTTAAACTCGCTTGGGACACAAAATCAGAACCAATCACGAGTAACAAATTTTGCGGATCCTTACCAGCACTACTTCACTCCCCAGCAAATGCGGATGCAACTACAGCAGAATCAAGCCATGCCTCAGCCAAGTTCTAGCAAGCCGAGTTCCAGTATGGGACCTGAAAATCAAGAGAGTCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

HLH

Protein Analysis

508

Amino Acids

56.02

Weight (kDa)

6.78

Isoelectric Point (pI)

71.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	300 - 347	6.5e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	306 - 349	1.5e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT2G20180 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28790 AT4G28800 AT4G28800 AT4G28811 AT4G28815 AT4G28815
fragaria_vesca	FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790 FvH4_2g19790
malus_domestica	MD05G1182300.v1.1 MD10G1170600.v1.1
prunus_persica	Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1 Prupe.8G209100_v2.0.a1
pyrus_communis	pycom10g14700
rosa_chinensis	RchiOBHm_Chr6g0285491
rosa_laevigata	RLG00000012635
rosa_multiflora	Rmu_sc0000284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183100
rosa_rugosa	Rorug06G0174800 Rorug06G0174800 Rorug06G0174900
rosa_samantha	Rh6AG286500 Rh6BG287700 Rh6CG288800 Rh6DG281600
rosa_wichuraiana	Rw6G024610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1240
AatII	GACGTC	3 cut(s)	674, 683, 928
Acc36I	ACCTGC	1 cut(s)	1240
AccB1I	GGYRCC	2 cut(s)	433, 629
AccBSI	CCGCTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	686
AccII	CGCG	3 cut(s)	12, 704, 806
AclWI	GGATC	8 cut(s)	305, 409, 780, 874, 944, 1295, 1391, 1404
AcoI	YGGCCR	2 cut(s)	276, 795
AcsI	RAATTY	2 cut(s)	20, 1387
AcuI	CTGAAG	1 cut(s)	1022
AcyI	GRCGYC	6 cut(s)	434, 564, 654, 671, 680, 925
AfaI	GTAC	2 cut(s)	616, 1050
AfiI	CCNNNNNNNGG	2 cut(s)	154, 645
AgsI	TTSAA	2 cut(s)	836, 1030
AhdI	GACNNNNNGTC	1 cut(s)	997
AjiI	CACGTC	1 cut(s)	663
AjnI	CCWGG	3 cut(s)	281, 473, 1093
AloI	GAACNNNNNNTCC	2 cut(s)	542, 574
AluBI	AGCT	5 cut(s)	253, 451, 893, 1208, 1241
AluI	AGCT	5 cut(s)	253, 451, 893, 1208, 1241
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	4 cut(s)	507, 662, 687, 916
AlwI	GGATC	8 cut(s)	305, 409, 780, 874, 944, 1295, 1391, 1404
AlwNI	CAGNNNCTG	1 cut(s)	1232
Ama87I	CYCGRG	1 cut(s)	861
AoxI	GGCC	4 cut(s)	276, 527, 795, 1178
ApeKI	GCWGC	6 cut(s)	212, 250, 409, 711, 760, 893
ApoI	RAATTY	2 cut(s)	20, 1387
AseI	ATTAAT	1 cut(s)	968
AspLEI	GCGC	6 cut(s)	217, 323, 436, 704, 722, 783
AspS9I	GGNCC	6 cut(s)	444, 527, 901, 1078, 1250, 1499
AsuC2I	CCSGG	3 cut(s)	646, 862, 863
AsuHPI	GGTGA	2 cut(s)	142, 241
AsuII	TTCGAA	2 cut(s)	24, 1276
AsuNHI	GCTAGC	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	861
AvaII	GGWCC	5 cut(s)	444, 901, 1078, 1250, 1499
BaeGI	GKGCMC	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	1396
BanI	GGYRCC	2 cut(s)	433, 629
BanII	GRGCYC	1 cut(s)	453
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
BauI	CACGAG	2 cut(s)	888, 1377
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	453
BbvCI	CCTCAGC	2 cut(s)	640, 1464
BbvI	GCAGC	6 cut(s)	224, 262, 396, 723, 747, 880
BccI	CCATC	2 cut(s)	426, 1111
BceAI	ACGGC	2 cut(s)	514, 641
BciT130I	CCWGG	3 cut(s)	283, 475, 1095
BcnI	CCSGG	3 cut(s)	646, 862, 863
BcoDI	GTCTC	4 cut(s)	507, 662, 687, 916
BfaI	CTAG	4 cut(s)	69, 582, 1305, 1476
BfmI	CTRYAG	2 cut(s)	287, 1442
BfoI	RGCGCY	2 cut(s)	437, 723
BfuAI	ACCTGC	1 cut(s)	1240
BglI	GCCNNNNNGGC	1 cut(s)	300
Bme1390I	CCNGG	6 cut(s)	283, 475, 646, 862, 863, 1095
Bme18I	GGWCC	5 cut(s)	444, 901, 1078, 1250, 1499
BmeRI	GACNNNNNGTC	1 cut(s)	997
BmeT110I	CYCGRG	1 cut(s)	861
BmgBI	CACGTC	1 cut(s)	663
BmgT120I	GGNCC	6 cut(s)	444, 527, 901, 1078, 1250, 1499
BmiI	GGNNCC	9 cut(s)	435, 528, 631, 1080, 1213, 1251, 1259, 1398, 1500
BmrFI	CCNGG	6 cut(s)	283, 475, 646, 862, 863, 1095
BmsI	GCATC	5 cut(s)	62, 123, 1058, 1176, 1425
BmtI	GCTAGC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	3 cut(s)	457, 553, 682
Bpu10I	CCTNAGC	3 cut(s)	640, 716, 1464
Bpu14I	TTCGAA	2 cut(s)	24, 1276
BpuMI	CCSGG	3 cut(s)	646, 862, 863
BsaHI	GRCGYC	6 cut(s)	434, 564, 654, 671, 680, 925
BsaJI	CCNNGG	7 cut(s)	404, 437, 516, 861, 862, 1062, 1253
BsaWI	WCCGGW	1 cut(s)	689
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 896, 926
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 645
Bse118I	RCCGGY	3 cut(s)	226, 430, 763
Bse1I	ACTGG	1 cut(s)	1491
BseBI	CCWGG	3 cut(s)	283, 475, 1095
BseDI	CCNNGG	7 cut(s)	404, 437, 516, 861, 862, 1062, 1253
BseGI	GGATG	6 cut(s)	418, 483, 829, 1015, 1073, 1440
BseLI	CCNNNNNNNGG	2 cut(s)	154, 645
BseMII	CTCAG	2 cut(s)	654, 1478
BseNI	ACTGG	1 cut(s)	1491
BseRI	GAGGAG	2 cut(s)	51, 454
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	6 cut(s)	224, 262, 396, 723, 747, 880
BseYI	CCCAGC	1 cut(s)	1422
Bsh1236I	CGCG	3 cut(s)	12, 704, 806
BshFI	GGCC	4 cut(s)	278, 529, 797, 1180
BshNI	GGYRCC	2 cut(s)	433, 629
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	8 cut(s)	50, 209, 227, 431, 645, 690, 764, 862
BsiWI	CGTACG	1 cut(s)	614
BslFI	GGGAC	5 cut(s)	171, 1064, 1263, 1369, 1512
BslI	CCNNNNNNNGG	2 cut(s)	154, 645
BsmAI	GTCTC	4 cut(s)	507, 662, 687, 916
BsmBI	CGTCTC	2 cut(s)	662, 916
BsmFI	GGGAC	5 cut(s)	171, 1064, 1263, 1369, 1512
BsmI	GAATGC	1 cut(s)	1284
BsnI	GGCC	4 cut(s)	278, 529, 797, 1180
BsoBI	CYCGRG	1 cut(s)	861
Bsp119I	TTCGAA	2 cut(s)	24, 1276
Bsp1286I	GDGCHC	2 cut(s)	296, 453
Bsp143I	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
Bsp19I	CCATGG	1 cut(s)	1062
BspANI	GGCC	4 cut(s)	278, 529, 797, 1180
BspCNI	CTCAG	2 cut(s)	653, 1477
BspFNI	CGCG	3 cut(s)	12, 704, 806
BspLI	GGNNCC	9 cut(s)	435, 528, 631, 1080, 1213, 1251, 1259, 1398, 1500
BspMI	ACCTGC	1 cut(s)	1240
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	8 cut(s)	305, 409, 780, 874, 944, 1295, 1391, 1404
BspQI	GCTCTTC	1 cut(s)	536
BspT104I	TTCGAA	2 cut(s)	24, 1276
BspT107I	GGYRCC	2 cut(s)	433, 629
BsrBI	CCGCTC	1 cut(s)	708
BsrFI	RCCGGY	3 cut(s)	226, 430, 763
BsrI	ACTGG	1 cut(s)	1491
BssAI	RCCGGY	3 cut(s)	226, 430, 763
BssECI	CCNNGG	7 cut(s)	404, 437, 516, 861, 862, 1062, 1253
BssMI	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
BssNI	GRCGYC	6 cut(s)	434, 564, 654, 671, 680, 925
BssSI	CACGAG	2 cut(s)	888, 1377
BssT1I	CCWWGG	1 cut(s)	1062
Bst2BI	CACGAG	2 cut(s)	888, 1377
Bst2UI	CCWGG	3 cut(s)	283, 475, 1095
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	536, 589
BstACI	GRCGYC	6 cut(s)	434, 564, 654, 671, 680, 925
BstAPI	GCANNNNNTGC	2 cut(s)	1111, 1288
BstBI	TTCGAA	2 cut(s)	24, 1276
BstC8I	GCNNGC	4 cut(s)	432, 583, 706, 1481
BstDEI	CTNAG	4 cut(s)	640, 716, 879, 1464
BstDSI	CCRYGG	1 cut(s)	1062
BstF5I	GGATG	6 cut(s)	418, 483, 829, 1015, 1073, 1440
BstFNI	CGCG	3 cut(s)	12, 704, 806
BstH2I	RGCGCY	2 cut(s)	437, 723
BstHHI	GCGC	6 cut(s)	217, 323, 436, 704, 722, 783
BstKTI	GATC	8 cut(s)	313, 417, 775, 869, 887, 939, 1303, 1399
BstMAI	GTCTC	4 cut(s)	507, 662, 687, 916
BstMBI	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
BstNI	CCWGG	3 cut(s)	283, 475, 1095
BstSCI	CCNGG	6 cut(s)	281, 473, 644, 860, 861, 1093
BstSFI	CTRYAG	2 cut(s)	287, 1442
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	3 cut(s)	12, 704, 806
BstV1I	GCAGC	6 cut(s)	224, 262, 396, 723, 747, 880
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	1396
BstYI	RGATCY	1 cut(s)	1396
BsuRI	GGCC	4 cut(s)	278, 529, 797, 1180
BtgI	CCRYGG	1 cut(s)	1062
BtrI	CACGTC	1 cut(s)	663
BtsCI	GGATG	6 cut(s)	418, 483, 829, 1015, 1073, 1440
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	1240
Cac8I	GCNNGC	4 cut(s)	432, 583, 706, 1481
CaiI	CAGNNNCTG	1 cut(s)	1232
CfoI	GCGC	6 cut(s)	217, 323, 436, 704, 722, 783
Cfr10I	RCCGGY	3 cut(s)	226, 430, 763
Cfr13I	GGNCC	6 cut(s)	444, 527, 901, 1078, 1250, 1499
Cfr9I	CCCGGG	1 cut(s)	861
CseI	GACGC	5 cut(s)	188, 572, 662, 812, 987
Csp6I	GTAC	2 cut(s)	615, 1049
CviAII	CATG	8 cut(s)	82, 100, 1063, 1075, 1147, 1153, 1219, 1459
CviQI	GTAC	2 cut(s)	615, 1049
DdeI	CTNAG	4 cut(s)	640, 716, 879, 1464
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	8 cut(s)	312, 416, 774, 868, 886, 938, 1302, 1398
DpnII	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
DriI	GACNNNNNGTC	1 cut(s)	997
EaeI	YGGCCR	2 cut(s)	276, 795
Eam1104I	CTCTTC	2 cut(s)	536, 589
Eam1105I	GACNNNNNGTC	1 cut(s)	997
EarI	CTCTTC	2 cut(s)	536, 589
EciI	GGCGGA	4 cut(s)	384, 414, 606, 744
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	1062
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	5 cut(s)	444, 901, 1078, 1250, 1499
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	1022
Eco88I	CYCGRG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	1499
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	3 cut(s)	281, 473, 1093
EcoT14I	CCWWGG	1 cut(s)	1062
EcoT38I	GRGCYC	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	1062
Esp3I	CGTCTC	2 cut(s)	662, 916
FaeI	CATG	8 cut(s)	85, 103, 1066, 1078, 1150, 1156, 1222, 1462
FaqI	GGGAC	5 cut(s)	171, 1064, 1263, 1369, 1512
FatI	CATG	8 cut(s)	81, 99, 1062, 1074, 1146, 1152, 1218, 1458
FauI	CCCGC	1 cut(s)	255
FauNDI	CATATG	2 cut(s)	1245, 1338
FblI	GTMKAC	1 cut(s)	686
FokI	GGATG	6 cut(s)	405, 490, 836, 1022, 1080, 1447
FriOI	GRGCYC	1 cut(s)	453
FspBI	CTAG	4 cut(s)	69, 582, 1305, 1476
GlaI	GCGC	6 cut(s)	216, 322, 435, 703, 721, 782
GsaI	CCCAGC	1 cut(s)	1426
GsuI	CTGGAG	3 cut(s)	457, 553, 682
HaeII	RGCGCY	2 cut(s)	437, 723
HaeIII	GGCC	4 cut(s)	278, 529, 797, 1180
HapII	CCGG	8 cut(s)	50, 209, 227, 431, 645, 690, 764, 862
HgaI	GACGC	5 cut(s)	188, 572, 662, 812, 987
HhaI	GCGC	6 cut(s)	217, 323, 436, 704, 722, 783
Hin1I	GRCGYC	6 cut(s)	434, 564, 654, 671, 680, 925
Hin1II	CATG	8 cut(s)	85, 103, 1066, 1078, 1150, 1156, 1222, 1462
Hin6I	GCGC	6 cut(s)	215, 321, 434, 702, 720, 781
HinP1I	GCGC	6 cut(s)	215, 321, 434, 702, 720, 781
HpaII	CCGG	8 cut(s)	50, 209, 227, 431, 645, 690, 764, 862
HphI	GGTGA	2 cut(s)	142, 241
Hpy166II	GTNNAC	2 cut(s)	687, 904
Hpy188I	TCNGA	9 cut(s)	517, 741, 777, 816, 916, 991, 1197, 1333, 1368
Hpy188III	TCNNGA	9 cut(s)	69, 156, 191, 345, 454, 888, 929, 1377, 1511
Hpy8I	GTNNAC	2 cut(s)	687, 904
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	4 cut(s)	662, 671, 680, 925
HpyCH4V	TGCA	8 cut(s)	136, 262, 961, 981, 1045, 1235, 1282, 1438
HpyF3I	CTNAG	4 cut(s)	640, 716, 879, 1464
HpySE526I	ACGT	4 cut(s)	662, 671, 680, 925
Hsp92I	GRCGYC	6 cut(s)	434, 564, 654, 671, 680, 925
Hsp92II	CATG	8 cut(s)	85, 103, 1066, 1078, 1150, 1156, 1222, 1462
HspAI	GCGC	6 cut(s)	215, 321, 434, 702, 720, 781
KasI	GGCGCC	1 cut(s)	433
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Kzo9I	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	6 cut(s)	224, 262, 396, 723, 747, 880
LweI	GCATC	5 cut(s)	62, 123, 1058, 1176, 1425
MaeI	CTAG	4 cut(s)	69, 582, 1305, 1476
MaeII	ACGT	4 cut(s)	662, 671, 680, 925
MaeIII	GTNAC	2 cut(s)	658, 1381
MalI	GATC	8 cut(s)	312, 416, 774, 868, 886, 938, 1302, 1398
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
MboII	GAAGA	6 cut(s)	48, 101, 278, 553, 606, 958
MflI	RGATCY	1 cut(s)	1396
MhlI	GDGCHC	2 cut(s)	296, 453
MluCI	AATT	4 cut(s)	4, 20, 965, 1387
Mly113I	GGCGCC	1 cut(s)	434
MlyI	GAGTC	4 cut(s)	689, 1183, 1320, 1525
MmeI	TCCRAC	2 cut(s)	384, 969
MreI	CGCCGGCG	1 cut(s)	430
MroNI	GCCGGC	1 cut(s)	430
MseI	TTAA	2 cut(s)	968, 1343
MslI	CAYNNNNRTG	2 cut(s)	1151, 1157
MspA1I	CMGCKG	2 cut(s)	253, 760
MspI	CCGG	8 cut(s)	50, 209, 227, 431, 645, 690, 764, 862
MspR9I	CCNGG	6 cut(s)	283, 475, 646, 862, 863, 1095
Mva1269I	GAATGC	1 cut(s)	1284
MvaI	CCWGG	3 cut(s)	283, 475, 1095
MvnI	CGCG	3 cut(s)	12, 704, 806
NaeI	GCCGGC	1 cut(s)	432
NarI	GGCGCC	1 cut(s)	434
NciI	CCSGG	3 cut(s)	646, 862, 863
NcoI	CCATGG	1 cut(s)	1062
NdeI	CATATG	2 cut(s)	1245, 1338
NdeII	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
NgoMIV	GCCGGC	1 cut(s)	430
NheI	GCTAGC	1 cut(s)	581
NlaIII	CATG	8 cut(s)	85, 103, 1066, 1078, 1150, 1156, 1222, 1462
NlaIV	GGNNCC	9 cut(s)	435, 528, 631, 1080, 1213, 1251, 1259, 1398, 1500
NmeAIII	GCCGAG	5 cut(s)	279, 385, 462, 748, 1509
NmuCI	GTSAC	1 cut(s)	658
NspV	TTCGAA	2 cut(s)	24, 1276
PaqCI	CACCTGC	1 cut(s)	1240
PciSI	GCTCTTC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	5 cut(s)	306, 668, 677, 680, 995
PctI	GAATGC	1 cut(s)	1284
PdiI	GCCGGC	1 cut(s)	432
PfeI	GAWTC	7 cut(s)	232, 341, 512, 551, 736, 836, 1450
Pfl23II	CGTACG	1 cut(s)	614
PflFI	GACNNNGTC	1 cut(s)	682
PfoI	TCCNGGA	1 cut(s)	473
PleI	GAGTC	4 cut(s)	689, 1182, 1319, 1524
PluTI	GGCGCC	1 cut(s)	437
PpsI	GAGTC	4 cut(s)	689, 1182, 1319, 1524
PpuMI	RGGWCCY	1 cut(s)	1499
PshBI	ATTAAT	1 cut(s)	968
Psp124BI	GAGCTC	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	1499
Psp6I	CCWGG	3 cut(s)	281, 473, 1093
PspFI	CCCAGC	1 cut(s)	1422
PspGI	CCWGG	3 cut(s)	281, 473, 1093
PspLI	CGTACG	1 cut(s)	614
PspN4I	GGNNCC	9 cut(s)	435, 528, 631, 1080, 1213, 1251, 1259, 1398, 1500
PspPI	GGNCC	6 cut(s)	444, 527, 901, 1078, 1250, 1499
PspPPI	RGGWCCY	1 cut(s)	1499
PstNI	CAGNNNCTG	1 cut(s)	1232
PsuI	RGATCY	1 cut(s)	1396
PsyI	GACNNNGTC	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	616, 1050
RsaNI	GTAC	2 cut(s)	615, 1049
RseI	CAYNNNNRTG	2 cut(s)	1151, 1157
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	968, 1343
Sau3AI	GATC	8 cut(s)	310, 414, 772, 866, 884, 936, 1300, 1396
Sau96I	GGNCC	6 cut(s)	444, 527, 901, 1078, 1250, 1499
SchI	GAGTC	4 cut(s)	689, 1183, 1320, 1525
ScrFI	CCNGG	6 cut(s)	283, 475, 646, 862, 863, 1095
SduI	GDGCHC	2 cut(s)	296, 453
SfaNI	GCATC	5 cut(s)	62, 123, 1058, 1176, 1425
SfcI	CTRYAG	2 cut(s)	287, 1442
SfoI	GGCGCC	1 cut(s)	435
SfuI	TTCGAA	2 cut(s)	24, 1276
SgrAI	CRCCGGYG	2 cut(s)	226, 430
SinI	GGWCC	5 cut(s)	444, 901, 1078, 1250, 1499
SmaI	CCCGGG	1 cut(s)	863
SmiMI	CAYNNNNRTG	2 cut(s)	1151, 1157
Sse9I	AATT	4 cut(s)	4, 20, 965, 1387
SspDI	GGCGCC	1 cut(s)	433
SspMI	CTAG	4 cut(s)	69, 582, 1305, 1476
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	6 cut(s)	281, 473, 644, 860, 861, 1093
StyI	CCWWGG	1 cut(s)	1062
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	4 cut(s)	665, 674, 683, 928
TaqI	TCGA	8 cut(s)	24, 539, 554, 561, 734, 869, 928, 1276
TaqII	GACCGA	2 cut(s)	461, 1267
TasI	AATT	4 cut(s)	4, 20, 965, 1387
TatI	WGTACW	1 cut(s)	1048
TfiI	GAWTC	7 cut(s)	232, 341, 512, 551, 736, 836, 1450
Tru1I	TTAA	2 cut(s)	968, 1343
Tru9I	TTAA	2 cut(s)	968, 1343
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	6 cut(s)	212, 250, 409, 711, 760, 893
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	3 cut(s)	17, 525, 1026
TspGWI	ACGGA	1 cut(s)	135
TspMI	CCCGGG	1 cut(s)	861
TspRI	CASTG	1 cut(s)	296
Tth111I	GACNNNGTC	1 cut(s)	682
VpaK11BI	GGWCC	5 cut(s)	444, 901, 1078, 1250, 1499
VspI	ATTAAT	1 cut(s)	968
XapI	RAATTY	2 cut(s)	20, 1387
XbaI	TCTAGA	1 cut(s)	68
XmaI	CCCGGG	1 cut(s)	861
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	4 cut(s)	69, 582, 1305, 1476
ZraI	GACGTC	3 cut(s)	672, 681, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.