Rorug06G0174900

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001638
Physical Location & Seq
Forward (+)
27333068 .. 27334080
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0174900.1

Sequence Viewer

Length: 300 bp
ATGATCACTCTCTCTTCCAAGAACGTCAAGAACCTCGAGAACGTTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAAGAGGCTCAAGGTGAAGGCACCAGTGAGGATGCCAACCAAGGTTCTGCACATTACCACCAGGAAGTTTCCCTGTGGAGAAGGTACCAACACCTGGAACAGATTTGAGTTGCGTGTGCACAAGTGTGTTATTGATATCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATTACATTTGAACCAGGTGTCGAAGTGGAGGTCACAATTGCTGACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009959 GO:0009987 GO:0010017 GO:0010029 GO:0010033 GO:0010099 GO:0010100 GO:0010114 GO:0010161 GO:0010187 GO:0010313 GO:0010468 GO:0010476 GO:0010556 GO:0015994 GO:0015995 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046148 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051186 GO:0051188 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
HLH

Protein Analysis

99

Amino Acids

11.14

Weight (kDa)

9.37

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 2 - 95 5e-25 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 3 cut(s) 65, 94, 158
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 63
AclI AACGTT 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 3 cut(s) 134, 167, 262
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw21I GWGCWC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 35
ApaLI GTGCAC 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
Asp718I GGTACC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 100, 235
AvaI CYCGRG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 195
BanI GGYRCC 3 cut(s) 65, 94, 158
Bbv12I GWGCWC 1 cut(s) 195
BciT130I CCWGG 3 cut(s) 136, 169, 264
BclI TGATCA 1 cut(s) 3
Bme1390I CCNGG 3 cut(s) 136, 169, 264
BmeT110I CYCGRG 1 cut(s) 35
BmiI GGNNCC 3 cut(s) 67, 96, 160
BmrFI CCNGG 3 cut(s) 136, 169, 264
BmsI GCATC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 69, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 3 cut(s) 136, 169, 264
BseDI CCNNGG 2 cut(s) 69, 114
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 63
BshNI GGYRCC 3 cut(s) 65, 94, 158
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 3, 240
BspACI CCGC 1 cut(s) 63
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 67, 96, 160
BspT107I GGYRCC 3 cut(s) 65, 94, 158
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 69, 114
BssMI GATC 2 cut(s) 3, 240
BssT1I CCWWGG 2 cut(s) 69, 114
Bst2UI CCWGG 3 cut(s) 136, 169, 264
Bst6I CTCTTC 1 cut(s) 19
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 6, 243
BstMBI GATC 2 cut(s) 3, 240
BstNI CCWGG 3 cut(s) 136, 169, 264
BstSCI CCNGG 3 cut(s) 134, 167, 262
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 105
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 159
CviJI RGCY 2 cut(s) 82, 219
CviKI_1 RGCY 2 cut(s) 82, 219
CviQI GTAC 1 cut(s) 159
DpnI GATC 2 cut(s) 5, 242
DpnII GATC 2 cut(s) 3, 240
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 2 cut(s) 69, 114
Eco32I GATATC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 134, 167, 262
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 69, 114
ErhI CCWWGG 2 cut(s) 69, 114
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 118
HphI GGTGA 2 cut(s) 100, 235
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 28, 37, 224
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 85, 149
HpyCH4IV ACGT 2 cut(s) 24, 42
HpyCH4V TGCA 2 cut(s) 124, 193
HpySE526I ACGT 2 cut(s) 24, 42
KpnI GGTACC 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 240
LpnPI CCDG 9 cut(s) 111, 121, 148, 154, 160, 181, 237, 249, 276
LweI GCATC 1 cut(s) 96
MabI ACCWGGT 1 cut(s) 262
MaeII ACGT 2 cut(s) 24, 42
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 5, 242
MboI GATC 2 cut(s) 3, 240
MboII GAAGA 2 cut(s) 6, 205
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 1 cut(s) 285
MnlI CCTC 5 cut(s) 44, 72, 96, 256, 271
MslI CAYNNNNRTG 1 cut(s) 198
MspR9I CCNGG 3 cut(s) 136, 169, 264
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 3 cut(s) 136, 169, 264
MvnI CGCG 1 cut(s) 63
NdeII GATC 2 cut(s) 3, 240
NlaIV GGNNCC 3 cut(s) 67, 96, 160
NmuCI GTSAC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 198
PaeR7I CTCGAG 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 168
Psp1406I AACGTT 1 cut(s) 42
Psp6I CCWGG 3 cut(s) 134, 167, 262
PspGI CCWGG 3 cut(s) 134, 167, 262
PspN4I GGNNCC 3 cut(s) 67, 96, 160
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 198
Sau3AI GATC 2 cut(s) 3, 240
ScrFI CCNGG 3 cut(s) 136, 169, 264
SduI GDGCHC 1 cut(s) 195
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 35
SlaI CTCGAG 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 35, 83
SmoI CTYRAG 2 cut(s) 35, 83
Sse9I AATT 1 cut(s) 285
SsiI CCGC 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 134, 167, 262
StyI CCWWGG 2 cut(s) 69, 114
TaiI ACGT 2 cut(s) 27, 45
TaqI TCGA 2 cut(s) 36, 270
TasI AATT 1 cut(s) 285
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspRI CASTG 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 168
VneI GTGCAC 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.