AT4G29250

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011292
Physical Location & Seq
Forward (+)
14420689 .. 14422281
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29250.1

Sequence Viewer

Length: 1383 bp
ATGTTTGCTAAAGAGAAGACAATAATGGAGGAGGACCGCGTGAGATTCATATGCAAAAGAACCGTGGTGAGCACTAGATCGATTGAACCAGGGCGATTATACCAGTTATCAGTATTGGACCACGTCATGGAACCAAACCACATTCGTCTAGTCTACTATTACCGGTGTTCCAAGACTAGAGAACCGGGAGAAATCACAAAAAAATTAAGGGAGTCATTAGCATACACACTCAATTGTTATCCGATTGTAACCGGGAGACTGGTTAAAGAAGTTGATGGTATGGAAGAGAATAAGGATTTAAGCCAACGATGGATGGTAAAGAGCAACGACGCCGGCGTGAGGATGGTGGAGGCCAGAGCAACCGGGTCAGTTAAGGAATGGCTTAGGAGTGTAAATAGAGAGGAAGAACTCAAGCTTGTTCATTGGGAAGACATGTATCATCTTCAATATTATTGGTCTACCTTCTGTGTTCAGGTAACTGAGTTTGAAAGTGGTGGGTTAGCTATTGGATTGAGTTGTAGCCATCTCTTAGCCGATCCAGTTTGTGCAATGATGTTTATTCGAGCTTGGGCAGATTTAACTTTGTCTCGGTCCATGATGGCTCCACCACTATTCCACCCGTTGCCGCCTCGCCGGTTTTCCAACCAAAGACTAATCTCTAACAACCAACTGCTTAGCCATTACATCAAATCTTGCTCTCTAACGGCTTCACCGTCAAACATGACCGAGGACCATATGGTCACCGTTACTTTTCTGTTCCCGGATCCGCTGGTCAGAGCCGGCGAGAATGAGCCAAGGATTTCGACATTTGAGATTTTGGCTGGACTCTTTTGGGTCTGTGTGAGTCGAGCCAAAGGAAAAAGAAACGAGCTCATGGACATGTCCTTGTGCTTAGACGTTAGGAAATTGTTGCGTTTAGACCAAAGTTATTTTGGTAATTGCATGGTTTATCACAAGGTTCCCTACTCCAAACCGGTTAAAACCAAAGATAAACTCTTATTCCACGCTGTTCAAGAGATTGAGAGCATAACCAAGAGACTAGACTACGACACGGTCATGGACTTGATTGAGTGGTTGAGTAGCAATAACGGTGCGATATCAAATGGTTCGGATCTCGTGTGTACTAATTTAGAAAACATGTCTCATTCACGTCCGATGATGTTCGAGGAGGATTTGGCTCTGAGCCACGTATCTTGCTATGTAGAAGGGCCTGTAGCTGGAGGTGGACAGGTCATAGTGCTTCCCTCACCGCCCGGTAAGGAACCAATGAGCCGAGTGGTTATGGTCAGTCTTCCTCAAAGAGTGATGGTTAAGGTTATAGAAGACGAGCTTCTTTTAAGCTTTTCTCCGGTCGTAATTATGGAAGATACAAAGCAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

460

Amino Acids

52.64

Weight (kDa)

6.65

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 15 - 441 3e-37 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1381
AasI GACNNNNNNGTC 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 127
AccI GTMKAC 2 cut(s) 153, 458
AccII CGCG 1 cut(s) 39
AciI CCGC 4 cut(s) 37, 626, 767, 1250
AclWI GGATC 4 cut(s) 530, 758, 771, 1119
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 1123
AfiI CCNNNNNNNGG 3 cut(s) 127, 339, 1217
AflIII ACRYGT 3 cut(s) 432, 879, 1137
AgeI ACCGGT 2 cut(s) 162, 973
AgsI TTSAA 4 cut(s) 86, 446, 488, 1013
AjiI CACGTC 2 cut(s) 124, 1151
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 7 cut(s) 415, 503, 566, 871, 1217, 1330, 1341
AluI AGCT 7 cut(s) 415, 503, 566, 871, 1217, 1330, 1341
Alw21I GWGCWC 2 cut(s) 74, 873
Alw26I GTCTC 4 cut(s) 250, 591, 1030, 1146
AlwI GGATC 4 cut(s) 530, 758, 771, 1119
AoxI GGCC 2 cut(s) 351, 1208
AsiGI ACCGGT 2 cut(s) 162, 973
AspS9I GGNCC 5 cut(s) 34, 118, 591, 730, 1208
AsuC2I CCSGG 5 cut(s) 186, 253, 364, 761, 1254
AsuHPI GGTGA 4 cut(s) 79, 702, 733, 1239
AvaII GGWCC 4 cut(s) 34, 118, 591, 730
BamHI GGATCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 873
BauI CACGAG 1 cut(s) 1115
BbsI GAAGAC 4 cut(s) 23, 435, 1283, 1329
Bbv12I GWGCWC 2 cut(s) 74, 873
BccI CCATC 7 cut(s) 269, 303, 307, 337, 531, 592, 1300
BceAI ACGGC 1 cut(s) 720
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 5 cut(s) 186, 253, 364, 761, 1254
BcoDI GTCTC 4 cut(s) 250, 591, 1030, 1146
BfaI CTAG 4 cut(s) 75, 149, 177, 1040
BfmI CTRYAG 1 cut(s) 1212
BisI GCNGC 1 cut(s) 626
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 1 cut(s) 627
Bme1390I CCNGG 6 cut(s) 90, 186, 253, 364, 761, 1254
Bme18I GGWCC 4 cut(s) 34, 118, 591, 730
BmgBI CACGTC 2 cut(s) 124, 1151
BmgT120I GGNCC 5 cut(s) 34, 118, 591, 730, 1208
BmiI GGNNCC 5 cut(s) 132, 603, 765, 960, 1263
BmrFI CCNGG 6 cut(s) 90, 186, 253, 364, 761, 1254
BpiI GAAGAC 4 cut(s) 23, 435, 1283, 1329
BpmI CTGGAG 1 cut(s) 1239
Bpu10I CCTNAGC 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 5 cut(s) 186, 253, 364, 761, 1254
Bsa29I ATCGAT 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 1189
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 63, 89, 726, 794
BsaWI WCCGGW 3 cut(s) 162, 973, 1348
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 339, 1217
Bse118I RCCGGY 5 cut(s) 162, 332, 633, 779, 973
Bse1I ACTGG 3 cut(s) 103, 264, 539
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 80
BseDI CCNNGG 4 cut(s) 63, 89, 726, 794
BseGI GGATG 2 cut(s) 318, 348
BseLI CCNNNNNNNGG 3 cut(s) 127, 339, 1217
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 471, 1172
BseNI ACTGG 3 cut(s) 103, 264, 539
BseRI GAGGAG 2 cut(s) 44, 1181
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 1353
BshFI GGCC 2 cut(s) 353, 1210
BshTI ACCGGT 2 cut(s) 162, 973
BshVI ATCGAT 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 1353
BsiHKAI GWGCWC 2 cut(s) 74, 873
BslI CCNNNNNNNGG 3 cut(s) 127, 339, 1217
BsmAI GTCTC 4 cut(s) 250, 591, 1030, 1146
BsnI GGCC 2 cut(s) 353, 1210
Bsp1286I GDGCHC 2 cut(s) 74, 873
Bsp143I GATC 4 cut(s) 77, 535, 763, 1111
Bsp1720I GCTNAGC 1 cut(s) 674
BspACI CCGC 4 cut(s) 37, 626, 767, 1250
BspANI GGCC 2 cut(s) 353, 1210
BspCNI CTCAG 2 cut(s) 472, 1173
BspDI ATCGAT 1 cut(s) 80
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 5 cut(s) 132, 603, 765, 960, 1263
BspPI GGATC 4 cut(s) 530, 758, 771, 1119
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 5 cut(s) 162, 332, 633, 779, 973
BsrI ACTGG 3 cut(s) 103, 264, 539
BssAI RCCGGY 5 cut(s) 162, 332, 633, 779, 973
BssECI CCNNGG 4 cut(s) 63, 89, 726, 794
BssMI GATC 4 cut(s) 77, 535, 763, 1111
BssNI GRCGYC 1 cut(s) 330
BssSI CACGAG 1 cut(s) 1115
BssT1I CCWWGG 1 cut(s) 794
Bst2BI CACGAG 1 cut(s) 1115
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 5 cut(s) 64, 714, 745, 1054, 1091
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 1189
BstC8I GCNNGC 2 cut(s) 334, 781
BstDEI CTNAG 6 cut(s) 383, 480, 529, 674, 892, 1181
BstDSI CCRYGG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 739
BstF5I GGATG 2 cut(s) 318, 348
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 4 cut(s) 80, 538, 766, 1114
BstMAI GTCTC 4 cut(s) 250, 591, 1030, 1146
BstMBI GATC 4 cut(s) 77, 535, 763, 1111
BstMCI CGRYCG 1 cut(s) 1353
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 3 cut(s) 436, 883, 1141
BstPI GGTNACC 1 cut(s) 739
BstSCI CCNGG 6 cut(s) 88, 184, 251, 362, 759, 1252
BstSFI CTRYAG 1 cut(s) 1212
BstUI CGCG 1 cut(s) 39
BstV2I GAAGAC 4 cut(s) 23, 435, 1283, 1329
BstX2I RGATCY 2 cut(s) 763, 1111
BstYI RGATCY 2 cut(s) 763, 1111
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 2 cut(s) 353, 1210
BsuTUI ATCGAT 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 63
BtrI CACGTC 2 cut(s) 124, 1151
BtsCI GGATG 2 cut(s) 318, 348
Cac8I GCNNGC 2 cut(s) 334, 781
Cfr10I RCCGGY 5 cut(s) 162, 332, 633, 779, 973
Cfr13I GGNCC 5 cut(s) 34, 118, 591, 730, 1208
ClaI ATCGAT 1 cut(s) 80
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 1122
CspAI ACCGGT 2 cut(s) 162, 973
CspCI CAANNNNNGTGG 2 cut(s) 1175, 1210
CviAII CATG 9 cut(s) 127, 433, 595, 721, 874, 880, 943, 1057, 1138
CviQI GTAC 1 cut(s) 1122
DdeI CTNAG 6 cut(s) 383, 480, 529, 674, 892, 1181
DpnI GATC 4 cut(s) 79, 537, 765, 1113
DpnII GATC 4 cut(s) 77, 535, 763, 1111
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 871
Eco130I CCWWGG 1 cut(s) 794
Eco24I GRGCYC 1 cut(s) 873
Eco32I GATATC 1 cut(s) 1098
Eco47I GGWCC 4 cut(s) 34, 118, 591, 730
Eco53kI GAGCTC 1 cut(s) 871
Eco91I GGTNACC 1 cut(s) 739
EcoICRI GAGCTC 1 cut(s) 871
EcoO109I RGGNCCY 1 cut(s) 1208
EcoO65I GGTNACC 1 cut(s) 739
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 1 cut(s) 1098
EcoT14I CCWWGG 1 cut(s) 794
EcoT38I GRGCYC 1 cut(s) 873
ErhI CCWWGG 1 cut(s) 794
FaeI CATG 9 cut(s) 130, 436, 598, 724, 877, 883, 946, 1060, 1141
FalI AAGNNNNNCTT 2 cut(s) 1314, 1346
FatI CATG 9 cut(s) 126, 432, 594, 720, 873, 879, 942, 1056, 1137
FauNDI CATATG 2 cut(s) 50, 735
FblI GTMKAC 2 cut(s) 153, 458
Fnu4HI GCNGC 1 cut(s) 626
FokI GGATG 2 cut(s) 325, 355
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 4 cut(s) 75, 149, 177, 1040
GluI GCNGC 1 cut(s) 626
GsuI CTGGAG 1 cut(s) 1239
HaeIII GGCC 2 cut(s) 353, 1210
HgaI GACGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 9 cut(s) 130, 436, 598, 724, 877, 883, 946, 1060, 1141
HindIII AAGCTT 2 cut(s) 413, 1339
HinfI GANTC 4 cut(s) 45, 212, 825, 844
HphI GGTGA 4 cut(s) 79, 702, 733, 1239
Hpy166II GTNNAC 4 cut(s) 154, 459, 1122, 1226
Hpy188I TCNGA 5 cut(s) 243, 776, 1111, 1155, 1182
Hpy188III TCNNGA 1 cut(s) 1013
Hpy8I GTNNAC 4 cut(s) 154, 459, 1122, 1226
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 472, 1199
HpyCH4III ACNGT 5 cut(s) 64, 714, 745, 1054, 1091
HpyCH4IV ACGT 4 cut(s) 123, 897, 1150, 1188
HpyCH4V TGCA 3 cut(s) 54, 548, 942
HpyF3I CTNAG 6 cut(s) 383, 480, 529, 674, 892, 1181
HpySE526I ACGT 4 cut(s) 123, 897, 1150, 1188
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 9 cut(s) 130, 436, 598, 724, 877, 883, 946, 1060, 1141
KroI GCCGGC 2 cut(s) 332, 779
KroNI GCCGGC 2 cut(s) 334, 781
Kzo9I GATC 4 cut(s) 77, 535, 763, 1111
LmnI GCTCC 1 cut(s) 607
MaeI CTAG 4 cut(s) 75, 149, 177, 1040
MaeII ACGT 4 cut(s) 123, 897, 1150, 1188
MaeIII GTNAC 4 cut(s) 247, 475, 739, 745
MalI GATC 4 cut(s) 79, 537, 765, 1113
MboI GATC 4 cut(s) 77, 535, 763, 1111
MboII GAAGA 8 cut(s) 28, 296, 416, 434, 440, 1283, 1334, 1376
MfeI CAATTG 1 cut(s) 232
MflI RGATCY 2 cut(s) 763, 1111
MhlI GDGCHC 2 cut(s) 74, 873
MluCI AATT 7 cut(s) 203, 232, 905, 937, 1126, 1356, 1376
MlyI GAGTC 3 cut(s) 221, 819, 853
MmeI TCCRAC 1 cut(s) 666
MreI CGCCGGCG 1 cut(s) 332
MroNI GCCGGC 2 cut(s) 332, 779
MseI TTAA 8 cut(s) 206, 264, 299, 372, 578, 978, 1311, 1337
MslI CAYNNNNRTG 2 cut(s) 878, 1055
MspA1I CMGCKG 1 cut(s) 769
MspR9I CCNGG 6 cut(s) 90, 186, 253, 364, 761, 1254
MunI CAATTG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 39
NaeI GCCGGC 2 cut(s) 334, 781
NciI CCSGG 5 cut(s) 186, 253, 364, 761, 1254
NdeI CATATG 2 cut(s) 50, 735
NdeII GATC 4 cut(s) 77, 535, 763, 1111
NgoMIV GCCGGC 2 cut(s) 332, 779
NlaIII CATG 9 cut(s) 130, 436, 598, 724, 877, 883, 946, 1060, 1141
NlaIV GGNNCC 5 cut(s) 132, 603, 765, 960, 1263
NmeAIII GCCGAG 1 cut(s) 1298
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 3 cut(s) 436, 883, 1141
PciI ACATGT 3 cut(s) 432, 879, 1137
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 710
PdiI GCCGGC 2 cut(s) 334, 781
PfeI GAWTC 1 cut(s) 45
PflFI GACNNNGTC 2 cut(s) 122, 1052
PflMI CCANNNNNTGG 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 759
PinAI ACCGGT 2 cut(s) 162, 973
PkrI GCNGC 1 cut(s) 627
PleI GAGTC 3 cut(s) 220, 819, 852
PpsI GAGTC 3 cut(s) 220, 819, 852
Ppu21I YACGTR 1 cut(s) 1189
PscI ACATGT 3 cut(s) 432, 879, 1137
PsiI TTATAA 1 cut(s) 1381
Psp124BI GAGCTC 1 cut(s) 873
Psp6I CCWGG 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 739
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 5 cut(s) 132, 603, 765, 960, 1263
PspPI GGNCC 5 cut(s) 34, 118, 591, 730, 1208
PsuI RGATCY 2 cut(s) 763, 1111
PsyI GACNNNGTC 2 cut(s) 122, 1052
RsaI GTAC 1 cut(s) 1123
RsaNI GTAC 1 cut(s) 1122
RseI CAYNNNNRTG 2 cut(s) 878, 1055
SacI GAGCTC 1 cut(s) 873
SaqAI TTAA 8 cut(s) 206, 264, 299, 372, 578, 978, 1311, 1337
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 4 cut(s) 77, 535, 763, 1111
Sau96I GGNCC 5 cut(s) 34, 118, 591, 730, 1208
SchI GAGTC 3 cut(s) 221, 819, 853
ScrFI CCNGG 6 cut(s) 90, 186, 253, 364, 761, 1254
SduI GDGCHC 2 cut(s) 74, 873
SfcI CTRYAG 1 cut(s) 1212
SgrAI CRCCGGYG 1 cut(s) 332
SinI GGWCC 4 cut(s) 34, 118, 591, 730
SmiMI CAYNNNNRTG 2 cut(s) 878, 1055
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 7 cut(s) 203, 232, 905, 937, 1126, 1356, 1376
SsiI CCGC 4 cut(s) 37, 626, 767, 1250
SspI AATATT 1 cut(s) 449
SspMI CTAG 4 cut(s) 75, 149, 177, 1040
SstI GAGCTC 1 cut(s) 873
StyD4I CCNGG 6 cut(s) 88, 184, 251, 362, 759, 1252
StyI CCWWGG 1 cut(s) 794
TaaI ACNGT 5 cut(s) 64, 714, 745, 1054, 1091
TaiI ACGT 4 cut(s) 126, 900, 1153, 1191
TaqI TCGA 5 cut(s) 80, 562, 803, 847, 1164
TaqII GACCGA 2 cut(s) 579, 740
TasI AATT 7 cut(s) 203, 232, 905, 937, 1126, 1356, 1376
TatI WGTACW 1 cut(s) 1121
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 8 cut(s) 206, 264, 299, 372, 578, 978, 1311, 1337
Tru9I TTAA 8 cut(s) 206, 264, 299, 372, 578, 978, 1311, 1337
TseFI GTSAC 1 cut(s) 739
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 2 cut(s) 37, 410
Tth111I GACNNNGTC 2 cut(s) 122, 1052
Van91I CCANNNNNTGG 1 cut(s) 127
VpaK11BI GGWCC 4 cut(s) 34, 118, 591, 730
XceI RCATGY 3 cut(s) 436, 883, 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XmiI GTMKAC 2 cut(s) 153, 458
XspI CTAG 4 cut(s) 75, 149, 177, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.