MD15G1118100.v1.1

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011292
Physical Location & Seq
Reverse (-)
8495953 .. 8496824
872 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1118100.v1.1.491

Sequence Viewer

Length: 555 bp
ATGATAAAGTGCAGTGATGTGGGCGTGAGAATGATCGAAGCTAAGGCAAGAGGGAGTTTGGAGGAGTGGTTAACAAATGTGGGTAGGGAAAAGGAGCTTATGCTTGTTTACTGGGAGGAAATGTACCATAAGCCTTATTTTTGGTCCACATTTTATGTTCAGCTTACGGAGTTTGAGGATGGTGGATTAGCAATTGGGCTGAGTTGCAGATCAAACTTGTGCAACCATGTTCTTCAAAGCTTGGGCTGGCAGGACGTTCTTGGGCAAGACGATGCATCCTACATTTTTCCACCCATTGCCTCCGCGGGGGCCGGGAAACAGAAGGCCGAACCAAAAGCCCTAAGCTGCCTTGATCAACCACTACAAAACCTCCATCAACAAGTCATTTCACCTTGTAGGCACAAAACACAGAACTATTGCTCTTGTTTTATCGGACGATATGGTTCCGGCTTGTATGGCCATGGCCCAGCCAGCCCATTGGTGCAACTGGCAAATCAAGCCCAACACTGTTTGAGGTCCTTGCTGGGGTCTTTTAGATTCGTATTAGCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

185

Amino Acids

20.58

Weight (kDa)

6.98

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 70 2.1e-08 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 305
AciI CCGC 2 cut(s) 303, 305
AcoI YGGCCR 1 cut(s) 457
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 306, 525
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 5 cut(s) 41, 97, 163, 240, 345
AluI AGCT 5 cut(s) 41, 97, 163, 240, 345
AoxI GGCC 4 cut(s) 309, 324, 457, 463
ApeKI GCWGC 1 cut(s) 345
AspS9I GGNCC 4 cut(s) 144, 309, 464, 516
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 381
AvaII GGWCC 2 cut(s) 144, 516
BalI TGGCCA 1 cut(s) 459
BbvI GCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 173, 381
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 313
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 144, 516
BmgT120I GGNCC 4 cut(s) 144, 309, 464, 516
BmiI GGNNCC 2 cut(s) 310, 445
BmrFI CCNGG 1 cut(s) 313
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 262, 284
BmuI ACTGGG 1 cut(s) 121
Bpu10I CCTNAGC 2 cut(s) 42, 341
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 303, 460
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 107, 137, 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 525
Bse1I ACTGG 2 cut(s) 116, 492
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 303, 460
BseGI GGATG 2 cut(s) 184, 275
BseLI CCNNNNNNNGG 2 cut(s) 306, 525
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 116, 492
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 332
BseYI CCCAGC 2 cut(s) 466, 523
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 4 cut(s) 311, 326, 459, 465
BsiSI CCGG 2 cut(s) 312, 447
BslI CCNNNNNNNGG 2 cut(s) 306, 525
BsnI GGCC 4 cut(s) 311, 326, 459, 465
Bsp143I GATC 3 cut(s) 33, 209, 352
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 2 cut(s) 303, 305
BspANI GGCC 4 cut(s) 311, 326, 459, 465
BspCNI CTCAG 1 cut(s) 192
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 310, 445
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 2 cut(s) 116, 492
BssECI CCNNGG 2 cut(s) 303, 460
BssMI GATC 3 cut(s) 33, 209, 352
BssT1I CCWWGG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 509
BstC8I GCNNGC 2 cut(s) 248, 472
BstDEI CTNAG 3 cut(s) 42, 200, 341
BstDSI CCRYGG 2 cut(s) 303, 460
BstF5I GGATG 2 cut(s) 184, 275
BstFNI CGCG 1 cut(s) 305
BstKTI GATC 3 cut(s) 36, 212, 355
BstMBI GATC 3 cut(s) 33, 209, 352
BstMWI GCNNNNNNNGC 3 cut(s) 456, 471, 497
BstSCI CCNGG 1 cut(s) 311
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 478
BsuRI GGCC 4 cut(s) 311, 326, 459, 465
BtgI CCRYGG 2 cut(s) 303, 460
BtsCI GGATG 2 cut(s) 184, 275
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 19, 505
Cac8I GCNNGC 2 cut(s) 248, 472
Cfr13I GGNCC 4 cut(s) 144, 309, 464, 516
Cfr42I CCGCGG 1 cut(s) 306
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 227, 461
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 3 cut(s) 42, 200, 341
DpnI GATC 3 cut(s) 35, 211, 354
DpnII GATC 3 cut(s) 33, 209, 352
EaeI YGGCCR 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 144, 516
EcoO109I RGGNCCY 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 460
EcoT22I ATGCAT 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 2 cut(s) 230, 464
FaiI YATR 7 cut(s) 101, 129, 156, 228, 441, 456, 462
FatI CATG 2 cut(s) 226, 460
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 2 cut(s) 191, 262
Fsp4HI GCNGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 346
GsaI CCCAGC 2 cut(s) 470, 527
HaeIII GGCC 4 cut(s) 311, 326, 459, 465
HapII CCGG 2 cut(s) 312, 447
Hin1II CATG 2 cut(s) 230, 464
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 1 cut(s) 537
HpaI GTTAAC 1 cut(s) 72
HpaII CCGG 2 cut(s) 312, 447
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 3 cut(s) 72, 109, 147
Hpy188I TCNGA 1 cut(s) 434
Hpy8I GTNNAC 3 cut(s) 72, 109, 147
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 255, 551
HpyCH4V TGCA 5 cut(s) 12, 207, 222, 275, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 456, 471, 497
HpyF3I CTNAG 3 cut(s) 42, 200, 341
HpySE526I ACGT 2 cut(s) 255, 551
Hsp92II CATG 2 cut(s) 230, 464
Ksp22I TGATCA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 72
KspI CCGCGG 1 cut(s) 306
Kzo9I GATC 3 cut(s) 33, 209, 352
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 9 cut(s) 97, 232, 236, 325, 460, 473, 480, 484, 509
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 2 cut(s) 262, 284
MaeII ACGT 2 cut(s) 255, 551
MalI GATC 3 cut(s) 35, 211, 354
MboI GATC 3 cut(s) 33, 209, 352
MboII GAAGA 1 cut(s) 224
MfeI CAATTG 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 1 cut(s) 192
MluNI TGGCCA 1 cut(s) 459
MnlI CCTC 7 cut(s) 44, 55, 109, 169, 310, 380, 507
Mox20I TGGCCA 1 cut(s) 459
Mph1103I ATGCAT 1 cut(s) 277
MscI TGGCCA 1 cut(s) 459
MseI TTAA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 312, 447
MspR9I CCNGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 192
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 3 cut(s) 456, 471, 497
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 460
NdeII GATC 3 cut(s) 33, 209, 352
NlaIII CATG 2 cut(s) 230, 464
NlaIV GGNNCC 2 cut(s) 310, 445
NsiI ATGCAT 1 cut(s) 277
PfeI GAWTC 1 cut(s) 537
PkrI GCNGC 1 cut(s) 347
PpuMI RGGWCCY 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 516
PspFI CCCAGC 2 cut(s) 466, 523
PspN4I GGNNCC 2 cut(s) 310, 445
PspPI GGNCC 4 cut(s) 144, 309, 464, 516
PspPPI RGGWCCY 1 cut(s) 516
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 3 cut(s) 33, 209, 352
Sau96I GGNCC 4 cut(s) 144, 309, 464, 516
ScrFI CCNGG 1 cut(s) 313
SfaNI GCATC 2 cut(s) 262, 284
Sfr303I CCGCGG 1 cut(s) 306
SgrBI CCGCGG 1 cut(s) 306
SinI GGWCC 2 cut(s) 144, 516
Sse9I AATT 1 cut(s) 192
SsiI CCGC 2 cut(s) 303, 305
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 258, 554
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 537
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 19, 512
TseI GCWGC 1 cut(s) 345
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 19, 512
VpaK11BI GGWCC 2 cut(s) 144, 516
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.