Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011292

Physical Location & Seq

Genomic Coordinates Reverse (-)

9842708 .. 9843403

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011480

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTTGCAGCCTCCGCTTTTCCACCCACTGCCACTGCGTAGACCCGGAAACAGAACACCCGATCACAGGCCCTATACCTCCCTGATCAACCACTACAAATACTCCATCAAGAAGTCTATGCATCCCGCAAACAAACAGCACGCAACCGTTGCCTTTGCCTTTGCCTTCTCGGACTCCATGGTTCGGGCCTGCATTGCCATGGCCCAGCCCATTGGTGCAACCAACAGATCCAATCCGTCACCCTTCGAGGCCCTAGCTGGCCTCTTTTGGGTCTGGATTGGCAAGGTACATAAAGATGGAATCCCACAAAACAACTTATCAGAAGCTGTGAGTTCTATAGGTGAGTTGGTAGCAAAAATGGACAACGAGGGTATCATGGATTTGATCGAGTGGCTCGAATGTACCGATGACCAATGTCCTTCACTGATGAACGAATTCAGATCTCATTTGTGCCAGCTTAGAGGCTGTAGACCCGTTTTCGACAGTTTTCGAAGATGGGATTGCACCCATTCGCGTGTCGTATTACGTAGAGCCGATGTTGGGGTTAGGGCAGGTTCTAATTTTTCCGGCAAAGCCGGAAGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

196

Amino Acids

21.99

Weight (kDa)

9.47

Isoelectric Point (pI)

67.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29250
fragaria_vesca	FvH4_2g29810
malus_domestica	MD08G1141600.v1.1 MD15G1118100.v1.1
prunus_persica	Prupe.1G471500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0298831 RchiOBHm_Chr6g0298841
rosa_laevigata	RLG00000011480 RLG00000011481
rosa_roxburghii	Rroxscaffold_7G00169290
rosa_rugosa	Rorug06G0283100 Rorug06G0283100
rosa_samantha	Rh6BG402800 Rh6BG402900 Rh6CG408500 Rh6CG408600 Rh6DG395300 Rh6DG395400 Rh6DG395500
rosa_wichuraiana	Rw6G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	542
AccI	GTMKAC	2 cut(s)	40, 469
AccII	CGCG	1 cut(s)	514
AciI	CCGC	2 cut(s)	14, 126
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	2 cut(s)	288, 403
AfiI	CCNNNNNNNGG	5 cut(s)	66, 183, 268, 540, 582
AluBI	AGCT	3 cut(s)	257, 326, 457
AluI	AGCT	3 cut(s)	257, 326, 457
AlwI	GGATC	1 cut(s)	222
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	5 cut(s)	68, 186, 201, 249, 259
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	4 cut(s)	69, 186, 202, 250
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	231, 353
AsuII	TTCGAA	1 cut(s)	490
BaeI	ACNNNNGTAYC	2 cut(s)	355, 388
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	113, 290, 489
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	45
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	336, 466
BfuAI	ACCTGC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	45
BmgT120I	GGNCC	4 cut(s)	69, 186, 202, 250
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	130
BoxI	GACNNNNGTC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	177, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 183, 268, 540, 582
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	177, 198
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	5 cut(s)	66, 183, 268, 540, 582
BseMI	GCAATG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	5 cut(s)	70, 188, 203, 251, 261
BsiSI	CCGG	3 cut(s)	45, 567, 576
BslI	CCNNNNNNNGG	5 cut(s)	66, 183, 268, 540, 582
BsnI	GGCC	5 cut(s)	70, 188, 203, 251, 261
Bsp119I	TTCGAA	1 cut(s)	490
Bsp143I	GATC	5 cut(s)	61, 84, 227, 384, 440
Bsp19I	CCATGG	2 cut(s)	177, 198
BspACI	CCGC	2 cut(s)	14, 126
BspANI	GGCC	5 cut(s)	70, 188, 203, 251, 261
BspFNI	CGCG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	177, 198
BssMI	GATC	5 cut(s)	61, 84, 227, 384, 440
BssT1I	CCWWGG	2 cut(s)	177, 198
Bst4CI	ACNGT	3 cut(s)	148, 485, 585
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	4 cut(s)	141, 190, 259, 455
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	2 cut(s)	177, 198
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	514
BstKTI	GATC	5 cut(s)	64, 87, 230, 387, 443
BstMBI	GATC	5 cut(s)	61, 84, 227, 384, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 149, 194
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	2 cut(s)	336, 466
BstSNI	TACGTA	1 cut(s)	527
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	2 cut(s)	227, 440
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	2 cut(s)	227, 440
BsuRI	GGCC	5 cut(s)	70, 188, 203, 251, 261
BtgI	CCRYGG	2 cut(s)	177, 198
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	2 cut(s)	26, 32
BtsIMutI	CAGTG	3 cut(s)	26, 32, 422
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	4 cut(s)	141, 190, 259, 455
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	4 cut(s)	69, 186, 202, 250
Csp6I	GTAC	2 cut(s)	287, 402
CviAII	CATG	3 cut(s)	178, 199, 376
CviQI	GTAC	2 cut(s)	287, 402
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	5 cut(s)	63, 86, 229, 386, 442
DpnII	GATC	5 cut(s)	61, 84, 227, 384, 440
Eco105I	TACGTA	1 cut(s)	527
Eco130I	CCWWGG	2 cut(s)	177, 198
EcoO109I	RGGNCCY	2 cut(s)	69, 250
EcoRI	GAATTC	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	177, 198
EcoT22I	ATGCAT	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	177, 198
FaeI	CATG	3 cut(s)	181, 202, 379
FaiI	YATR	7 cut(s)	75, 119, 179, 200, 291, 338, 377
FatI	CATG	3 cut(s)	177, 198, 375
FauI	CCCGC	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	2 cut(s)	40, 469
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	8
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	5 cut(s)	70, 188, 203, 251, 261
HapII	CCGG	3 cut(s)	45, 567, 576
Hin1II	CATG	3 cut(s)	181, 202, 379
HinfI	GANTC	2 cut(s)	173, 300
HpaII	CCGG	3 cut(s)	45, 567, 576
HphI	GGTGA	2 cut(s)	231, 353
Hpy166II	GTNNAC	2 cut(s)	41, 470
Hpy188I	TCNGA	3 cut(s)	172, 322, 440
Hpy188III	TCNNGA	2 cut(s)	109, 274
Hpy8I	GTNNAC	2 cut(s)	41, 470
HpyAV	CCTTC	3 cut(s)	175, 253, 429
HpyCH4III	ACNGT	3 cut(s)	148, 485, 585
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	5 cut(s)	7, 121, 192, 218, 504
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 149, 194
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	3 cut(s)	181, 202, 379
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	61, 84, 227, 384, 440
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	5 cut(s)	63, 86, 229, 386, 442
MboI	GATC	5 cut(s)	61, 84, 227, 384, 440
MboII	GAAGA	1 cut(s)	504
MflI	RGATCY	2 cut(s)	227, 440
MluCI	AATT	2 cut(s)	434, 559
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	6 cut(s)	21, 88, 241, 272, 361, 455
Mph1103I	ATGCAT	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	434
MslI	CAYNNNNRTG	3 cut(s)	197, 294, 513
MspI	CCGG	3 cut(s)	45, 567, 576
MspR9I	CCNGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	13, 149, 194
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	2 cut(s)	177, 198
NdeII	GATC	5 cut(s)	61, 84, 227, 384, 440
NlaIII	CATG	3 cut(s)	181, 202, 379
NmuCI	GTSAC	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	2 cut(s)	393, 402
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	527
PshAI	GACNNNNGTC	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	204
PspPI	GGNCC	4 cut(s)	69, 186, 202, 250
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	227, 440
RsaI	GTAC	2 cut(s)	288, 403
RsaNI	GTAC	2 cut(s)	287, 402
RseI	CAYNNNNRTG	3 cut(s)	197, 294, 513
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	5 cut(s)	61, 84, 227, 384, 440
Sau96I	GGNCC	4 cut(s)	69, 186, 202, 250
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	8 cut(s)	80, 259, 288, 328, 343, 459, 529, 556
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	2 cut(s)	336, 466
SfuI	TTCGAA	1 cut(s)	490
SmiMI	CAYNNNNRTG	3 cut(s)	197, 294, 513
SnaBI	TACGTA	1 cut(s)	527
Sse9I	AATT	2 cut(s)	434, 559
SsiI	CCGC	2 cut(s)	14, 126
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	2 cut(s)	177, 198
TaaI	ACNGT	3 cut(s)	148, 485, 585
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	5 cut(s)	246, 387, 396, 480, 490
TasI	AATT	2 cut(s)	434, 559
TfiI	GAWTC	1 cut(s)	300
TscAI	CASTG	3 cut(s)	33, 39, 429
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	3 cut(s)	33, 39, 429
XapI	RAATTY	1 cut(s)	434
XmiI	GTMKAC	2 cut(s)	40, 469
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	1 cut(s)	254
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.