Rh6DG395400

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011292
Physical Location & Seq
Forward (+)
58671615 .. 58672058
444 bp
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UTR
Exon/CDS
Intron
Rh6DG395400.1

Sequence Viewer

Length: 321 bp
ATGGTGGAAGCTAGGGCTAAAGGGACTTTGGAGGAGTGGCTTAGAAATGTGGATAGGGAGAAGGAGCTTATGCTTGTCTATTGGGAGGAAATGGACCACCATCCCTTATTTTGCTTACTGAATTTGAGGATGCATGGTGGTTTAGCAATTGGGCTAAGCTGCACTCATCTCCTGGCAGATCCCACTTCGGGAACCGTGTTCCTTAAGGCCTGGGCTGACACAAGCTTCCCCGGACAAATGTTCCAGCCTCCGCTTTTCCACCCACTGCCACCCCGTAGACCCGGAAACAGAACACCCGATTCAGGCCCTATACCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

106

Amino Acids

12.0

Weight (kDa)

6.17

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 84 8.9e-08 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 188, 302
AflII CTTAAG 1 cut(s) 203
AjnI CCWGG 2 cut(s) 171, 209
AluBI AGCT 4 cut(s) 11, 67, 159, 225
AluI AGCT 4 cut(s) 11, 67, 159, 225
AlwI GGATC 1 cut(s) 173
AoxI GGCC 2 cut(s) 207, 304
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 94, 305
AsuC2I CCSGG 2 cut(s) 231, 282
AvaII GGWCC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 173, 211
BcnI CCSGG 2 cut(s) 231, 282
BfaI CTAG 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 4 cut(s) 173, 211, 231, 282
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 94, 305
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 4 cut(s) 173, 211, 231, 282
BmsI GCATC 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 231, 282
BsaJI CCNNGG 2 cut(s) 210, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 302
BseBI CCWGG 2 cut(s) 173, 211
BseDI CCNNGG 2 cut(s) 210, 229
BseGI GGATG 2 cut(s) 100, 135
BseLI CCNNNNNNNGG 2 cut(s) 188, 302
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 2 cut(s) 209, 306
BsiSI CCGG 2 cut(s) 231, 282
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 188, 302
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 2 cut(s) 209, 306
Bsp143I GATC 1 cut(s) 178
Bsp1720I GCTNAGC 1 cut(s) 155
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 209, 306
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 210, 229
BssMI GATC 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 173, 211
Bst4CI ACNGT 1 cut(s) 196
BstAFI CTTAAG 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 41, 155
BstF5I GGATG 2 cut(s) 100, 135
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 173, 211
BstSCI CCNGG 4 cut(s) 171, 209, 229, 280
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 2 cut(s) 209, 306
BtsCI GGATG 2 cut(s) 100, 135
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 94, 305
CviAII CATG 1 cut(s) 134
DdeI CTNAG 2 cut(s) 41, 155
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco147I AGGCCT 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 171, 209
EcoT22I ATGCAT 1 cut(s) 135
FaeI CATG 1 cut(s) 137
FaiI YATR 3 cut(s) 71, 135, 311
FaqI GGGAC 1 cut(s) 37
FatI CATG 1 cut(s) 133
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 2 cut(s) 87, 142
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 2 cut(s) 209, 306
HapII CCGG 2 cut(s) 231, 282
Hin1II CATG 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 1 cut(s) 299
HpaII CCGG 2 cut(s) 231, 282
Hpy166II GTNNAC 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 133, 162
HpyF3I CTNAG 2 cut(s) 41, 155
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 8 cut(s) 158, 185, 196, 223, 244, 257, 288, 295
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 12
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 178
MluCI AATT 2 cut(s) 121, 147
MnlI CCTC 4 cut(s) 25, 79, 120, 258
Mph1103I ATGCAT 1 cut(s) 135
MseI TTAA 1 cut(s) 204
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 2 cut(s) 231, 282
MspR9I CCNGG 4 cut(s) 173, 211, 231, 282
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 2 cut(s) 173, 211
NciI CCSGG 2 cut(s) 231, 282
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 135
PceI AGGCCT 1 cut(s) 209
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 161
Psp6I CCWGG 2 cut(s) 171, 209
PspGI CCWGG 2 cut(s) 171, 209
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 94, 305
PsuI RGATCY 1 cut(s) 178
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 2 cut(s) 94, 305
ScrFI CCNGG 4 cut(s) 173, 211, 231, 282
SetI ASST 5 cut(s) 13, 69, 161, 227, 316
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 121, 147
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 4 cut(s) 171, 209, 229, 280
TaaI ACNGT 1 cut(s) 196
TasI AATT 2 cut(s) 121, 147
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 159
TspRI CASTG 1 cut(s) 270
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.