FvH4_2g29810

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011292
Physical Location & Seq
Forward (+)
23036306 .. 23038098
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29810.t1

Sequence Viewer

Length: 1353 bp
ATGGCCAAGGTCAAAATCATTTGCACACGAACAGTCGTGAGCACGAAACCTGTTGAGGTCGAAAAATGCCACTCTTTATCGGTTCTTGACCGAATAATGGAGAAGAAACACCTTAGAATGGTGTTGTATTACGCATCAATGGGTGTGCCAGAGCCCGGTGAAGTCACTAGGAGGCGTAGAGAGTCCATTTCGGATGCGCTTACAAGTTTTCCGATAATGACAGGCCGGTTGGCGAGGAATGAGAGAGGGCAGTGGACATCGAAGTTCAATGACGCTGGAGTGAGAATGGTGGAAGTTAGGGCTAAAGGGAGTTTGGAGGAGTGGCTAAGAAATGTGGATAGGGAGAAAGAGCTTATGCTTGTCTATTGGGAAGAAATGGACCACCGTCCCTTGTTATGGTCTACATTTTATGTGCAGCTTACCGAATTTGAGGACGGTGGTTTAGCAATTGGGTTAAGTTGCAATCATCTTCTGGCAGATCCAACTTCTGCAACTATGTTCCTCAAAGCCTGGGCCGACGCAAGCTTCCCTGGAAAGCTGTTGCAGCCACCATTTTTCCACCCACTGCTGCCACGGAGGTCCGGAAACAAAAAACTCGATCACAAACCGTATACCTCCTTGATCAACCACTACAAAGACTCCATCAAGAATTCTATGCAGCTTCCGGCAAACAAAAGTCACACAACTGTTGCCTTTGCCTTCTCGGACTCCATGGTTCGGGCCTGCATTGCCATGGCCCAGCCCATTGGTGCGACCAACAGATCCAAACCATCACCCTTCGAGGCCCTAGCTGGGCTCTTCTGGTTCTGCATTAGCAAGGTGAAAGGAATTGGAAATGAGCTAATCAACATGTCTATATGCATGGATATGAGAACGGTTTTAGGTTTGGATAAAGGTTTCTTTGGAAATTGCATGGTTTATAACAAAGTGCATCAAGAGGGTTTCCAAGGAAACAACTTATCAGAAGCTGTGAGTTCTATAGGTGAAGTGGTCGCAAAAATGGACTGCGAAGGCATCATGGATTTGATAGAGTGGCTCGAACATACTGATGATCAATGTCCTTTGTTGATGAACGATTCTGATCTCATTTGTGCTAGCTTAGAGGCCGTAGACCCGTTTTCAACAGTTTTCGAAGACGGGAATGCACCCATTCGCGTGTCGTATTATGTGGAGCCAGTGTTAAGGTTAGGACAGGTTCTAATTTTTCCGGCAAAGCCAGGAGATGGTGAATTGAGTAGGGTGGTAATGGTTACACTTCCACATGATGAGATGGCCAAGTTACATGAAGATGAGCTTGTTCGACGCCTTTCTCCGACTATCTTCACAGACATGCATAAAATAAAAACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

451

Amino Acids

50.71

Weight (kDa)

6.37

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 430 1.1e-41 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AccB7I CCANNNNNTGG 1 cut(s) 1223
AccI GTMKAC 3 cut(s) 401, 611, 1110
AccII CGCG 1 cut(s) 1155
AccIII TCCGGA 1 cut(s) 581
AclWI GGATC 2 cut(s) 473, 756
AcoI YGGCCR 2 cut(s) 3, 1272
AcsI RAATTY 2 cut(s) 425, 649
AcyI GRCGYC 1 cut(s) 1303
AfiI CCNNNNNNNGG 7 cut(s) 97, 118, 155, 396, 717, 792, 1223
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 2 cut(s) 268, 1122
AjnI CCWGG 3 cut(s) 509, 529, 1216
Alw21I GWGCWC 1 cut(s) 44
AlwI GGATC 2 cut(s) 473, 756
AlwNI CAGNNNCTG 1 cut(s) 968
Aor13HI TCCGGA 1 cut(s) 581
AoxI GGCC 8 cut(s) 3, 223, 513, 720, 735, 783, 1104, 1272
ApeKI GCWGC 4 cut(s) 415, 544, 568, 658
ApoI RAATTY 2 cut(s) 425, 649
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 6 cut(s) 379, 513, 579, 720, 736, 784
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 5 cut(s) 170, 765, 832, 995, 1238
AsuII TTCGAA 1 cut(s) 1131
AsuNHI GCTAGC 1 cut(s) 1094
AvaII GGWCC 2 cut(s) 379, 579
BalI TGGCCA 2 cut(s) 5, 1274
BanII GRGCYC 2 cut(s) 156, 798
BbsI GAAGAC 1 cut(s) 1140
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 427, 555, 556, 670
BccI CCATC 4 cut(s) 650, 778, 1217, 1264
BceAI ACGGC 1 cut(s) 1091
BciT130I CCWGG 3 cut(s) 511, 531, 1218
BclI TGATCA 2 cut(s) 621, 1051
BcnI CCSGG 1 cut(s) 156
BfaI CTAG 3 cut(s) 168, 788, 1095
BfmI CTRYAG 1 cut(s) 978
BisI GCNGC 4 cut(s) 416, 545, 569, 659
BlsI GCNGC 4 cut(s) 417, 546, 570, 660
Bme1390I CCNGG 4 cut(s) 156, 511, 531, 1218
Bme18I GGWCC 2 cut(s) 379, 579
BmgT120I GGNCC 6 cut(s) 379, 513, 579, 720, 736, 784
BmiI GGNNCC 1 cut(s) 1173
BmrFI CCNGG 4 cut(s) 156, 511, 531, 1218
BmsI GCATC 4 cut(s) 143, 184, 940, 1023
BmtI GCTAGC 1 cut(s) 1098
BoxI GACNNNNGTC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 1140
BpmI CTGGAG 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 1131
BpuMI CCSGG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 1080
BsaHI GRCGYC 1 cut(s) 1303
BsaJI CCNNGG 7 cut(s) 6, 510, 529, 572, 711, 732, 946
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 4 cut(s) 623, 653, 1163, 1193
Bsc4I CCNNNNNNNGG 7 cut(s) 97, 118, 155, 396, 717, 792, 1223
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 1175
Bse3DI GCAATG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 1080
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 3 cut(s) 511, 531, 1218
BseDI CCNNGG 7 cut(s) 6, 510, 529, 572, 711, 732, 946
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 1080
BseLI CCNNNNNNNGG 7 cut(s) 97, 118, 155, 396, 717, 792, 1223
BseMI GCAATG 1 cut(s) 726
BseNI ACTGG 1 cut(s) 1175
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 4 cut(s) 427, 555, 556, 670
BseYI CCCAGC 2 cut(s) 738, 791
BsgI GTGCAG 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 1155
BshFI GGCC 8 cut(s) 5, 225, 515, 722, 737, 785, 1106, 1274
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 5 cut(s) 156, 226, 582, 665, 1208
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 7 cut(s) 97, 118, 155, 396, 717, 792, 1223
BsmFI GGGAC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 1147
BsnI GGCC 8 cut(s) 5, 225, 515, 722, 737, 785, 1106, 1274
Bsp119I TTCGAA 1 cut(s) 1131
Bsp1286I GDGCHC 3 cut(s) 44, 156, 798
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
Bsp19I CCATGG 2 cut(s) 711, 732
BspANI GGCC 8 cut(s) 5, 225, 515, 722, 737, 785, 1106, 1274
BspEI TCCGGA 1 cut(s) 581
BspFNI CGCG 1 cut(s) 1155
BspLI GGNNCC 1 cut(s) 1173
BspOI GCTAGC 1 cut(s) 1098
BspPI GGATC 2 cut(s) 473, 756
BspQI GCTCTTC 1 cut(s) 803
BspT104I TTCGAA 1 cut(s) 1131
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 1 cut(s) 1175
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 7 cut(s) 6, 510, 529, 572, 711, 732, 946
BssMI GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
BssNAI GTATAC 1 cut(s) 612
BssNI GRCGYC 1 cut(s) 1303
BssT1I CCWWGG 4 cut(s) 6, 711, 732, 946
Bst1107I GTATAC 1 cut(s) 612
Bst2UI CCWGG 3 cut(s) 511, 531, 1218
Bst4CI ACNGT 7 cut(s) 34, 386, 437, 609, 688, 877, 1126
Bst6I CTCTTC 1 cut(s) 803
BstACI GRCGYC 1 cut(s) 1303
BstBI TTCGAA 1 cut(s) 1131
BstC8I GCNNGC 3 cut(s) 523, 724, 1096
BstDEI CTNAG 3 cut(s) 113, 326, 1099
BstDSI CCRYGG 3 cut(s) 572, 711, 732
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 1155
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 6 cut(s) 481, 601, 624, 764, 1054, 1084
BstMBI GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
BstMWI GCNNNNNNNGC 2 cut(s) 544, 728
BstNI CCWGG 3 cut(s) 511, 531, 1218
BstNSI RCATGY 2 cut(s) 853, 1333
BstPAI GACNNNNGTC 1 cut(s) 384
BstSCI CCNGG 4 cut(s) 154, 509, 529, 1216
BstSFI CTRYAG 1 cut(s) 978
BstUI CGCG 1 cut(s) 1155
BstV1I GCAGC 4 cut(s) 427, 555, 556, 670
BstV2I GAAGAC 1 cut(s) 1140
BstX2I RGATCY 2 cut(s) 478, 761
BstXI CCANNNNNNTGG 1 cut(s) 746
BstYI RGATCY 2 cut(s) 478, 761
BstZ17I GTATAC 1 cut(s) 612
BsuRI GGCC 8 cut(s) 5, 225, 515, 722, 737, 785, 1106, 1274
BtgI CCRYGG 3 cut(s) 572, 711, 732
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 2 cut(s) 257, 563
BtsIMutI CAGTG 3 cut(s) 257, 563, 1182
Cac8I GCNNGC 3 cut(s) 523, 724, 1096
CaiI CAGNNNCTG 1 cut(s) 968
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 6 cut(s) 379, 513, 579, 720, 736, 784
CseI GACGC 3 cut(s) 281, 527, 1311
CviAII CATG 9 cut(s) 712, 733, 850, 862, 913, 1018, 1262, 1283, 1330
DdeI CTNAG 3 cut(s) 113, 326, 1099
DpnI GATC 6 cut(s) 480, 600, 623, 763, 1053, 1083
DpnII GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
EaeI YGGCCR 2 cut(s) 3, 1272
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Eco130I CCWWGG 4 cut(s) 6, 711, 732, 946
Eco24I GRGCYC 2 cut(s) 156, 798
Eco47I GGWCC 2 cut(s) 379, 579
EcoO109I RGGNCCY 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 3 cut(s) 509, 529, 1216
EcoT14I CCWWGG 4 cut(s) 6, 711, 732, 946
EcoT22I ATGCAT 2 cut(s) 863, 1335
EcoT38I GRGCYC 2 cut(s) 156, 798
ErhI CCWWGG 4 cut(s) 6, 711, 732, 946
FaeI CATG 9 cut(s) 715, 736, 853, 865, 916, 1021, 1265, 1286, 1333
FalI AAGNNNNNCTT 2 cut(s) 1278, 1310
FaqI GGGAC 1 cut(s) 372
FatI CATG 9 cut(s) 711, 732, 849, 861, 912, 1017, 1261, 1282, 1329
FbaI TGATCA 2 cut(s) 621, 1051
FblI GTMKAC 3 cut(s) 401, 611, 1110
Fnu4HI GCNGC 4 cut(s) 416, 545, 569, 659
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 2 cut(s) 156, 798
Fsp4HI GCNGC 4 cut(s) 416, 545, 569, 659
FspBI CTAG 3 cut(s) 168, 788, 1095
GlaI GCGC 1 cut(s) 198
GluI GCNGC 4 cut(s) 416, 545, 569, 659
GsaI CCCAGC 2 cut(s) 742, 795
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 8 cut(s) 5, 225, 515, 722, 737, 785, 1106, 1274
HapII CCGG 5 cut(s) 156, 226, 582, 665, 1208
HgaI GACGC 3 cut(s) 281, 527, 1311
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 1303
Hin1II CATG 9 cut(s) 715, 736, 853, 865, 916, 1021, 1265, 1286, 1333
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 4 cut(s) 182, 638, 707, 1076
HpaII CCGG 5 cut(s) 156, 226, 582, 665, 1208
HphI GGTGA 5 cut(s) 170, 765, 832, 995, 1238
Hpy166II GTNNAC 4 cut(s) 255, 402, 612, 1111
Hpy188I TCNGA 6 cut(s) 193, 213, 706, 964, 1081, 1314
Hpy188III TCNNGA 5 cut(s) 37, 86, 582, 646, 935
Hpy8I GTNNAC 4 cut(s) 255, 402, 612, 1111
Hpy99I CGWCG 2 cut(s) 521, 1305
HpyAV CCTTC 3 cut(s) 709, 787, 1004
HpyCH4III ACNGT 7 cut(s) 34, 386, 437, 609, 688, 877, 1126
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 728
HpyF3I CTNAG 3 cut(s) 113, 326, 1099
Hsp92I GRCGYC 1 cut(s) 1303
Hsp92II CATG 9 cut(s) 715, 736, 853, 865, 916, 1021, 1265, 1286, 1333
HspAI GCGC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 581
Ksp22I TGATCA 2 cut(s) 621, 1051
Kzo9I GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
LguI GCTCTTC 1 cut(s) 803
LmnI GCTCC 1 cut(s) 1171
Lsp1109I GCAGC 4 cut(s) 427, 555, 556, 670
LweI GCATC 4 cut(s) 143, 184, 940, 1023
MaeI CTAG 3 cut(s) 168, 788, 1095
MaeIII GTNAC 4 cut(s) 163, 677, 1249, 1278
MalI GATC 6 cut(s) 480, 600, 623, 763, 1053, 1083
MboI GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
MboII GAAGA 7 cut(s) 115, 383, 461, 790, 1145, 1298, 1312
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 478, 761
MhlI GDGCHC 3 cut(s) 44, 156, 798
MlsI TGGCCA 2 cut(s) 5, 1274
MluCI AATT 7 cut(s) 425, 447, 649, 828, 907, 1200, 1229
MluNI TGGCCA 2 cut(s) 5, 1274
MlyI GAGTC 3 cut(s) 191, 632, 701
MmeI TCCRAC 2 cut(s) 506, 1337
Mox20I TGGCCA 2 cut(s) 5, 1274
Mph1103I ATGCAT 2 cut(s) 863, 1335
MroI TCCGGA 1 cut(s) 581
MscI TGGCCA 2 cut(s) 5, 1274
MseI TTAA 2 cut(s) 455, 1181
MslI CAYNNNNRTG 6 cut(s) 731, 866, 1047, 1154, 1287, 1328
Msp20I TGGCCA 2 cut(s) 5, 1274
MspI CCGG 5 cut(s) 156, 226, 582, 665, 1208
MspR9I CCNGG 4 cut(s) 156, 511, 531, 1218
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 1147
MvaI CCWGG 3 cut(s) 511, 531, 1218
MvnI CGCG 1 cut(s) 1155
MwoI GCNNNNNNNGC 2 cut(s) 544, 728
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 2 cut(s) 711, 732
NdeII GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
NheI GCTAGC 1 cut(s) 1094
NlaIII CATG 9 cut(s) 715, 736, 853, 865, 916, 1021, 1265, 1286, 1333
NlaIV GGNNCC 1 cut(s) 1173
NmuCI GTSAC 2 cut(s) 163, 677
NsiI ATGCAT 2 cut(s) 863, 1335
NspI RCATGY 2 cut(s) 853, 1333
NspV TTCGAA 1 cut(s) 1131
PciI ACATGT 1 cut(s) 849
PciSI GCTCTTC 1 cut(s) 803
PctI GAATGC 1 cut(s) 1147
PfeI GAWTC 1 cut(s) 1076
PflMI CCANNNNNTGG 1 cut(s) 1223
PkrI GCNGC 4 cut(s) 417, 546, 570, 660
PleI GAGTC 3 cut(s) 190, 632, 701
PpsI GAGTC 3 cut(s) 190, 632, 701
PscI ACATGT 1 cut(s) 849
PshAI GACNNNNGTC 1 cut(s) 384
PsiI TTATAA 1 cut(s) 921
Psp6I CCWGG 3 cut(s) 509, 529, 1216
PspFI CCCAGC 2 cut(s) 738, 791
PspGI CCWGG 3 cut(s) 509, 529, 1216
PspN4I GGNNCC 1 cut(s) 1173
PspPI GGNCC 6 cut(s) 379, 513, 579, 720, 736, 784
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 2 cut(s) 478, 761
RseI CAYNNNNRTG 6 cut(s) 731, 866, 1047, 1154, 1287, 1328
SapI GCTCTTC 1 cut(s) 803
SaqAI TTAA 2 cut(s) 455, 1181
SatI GCNGC 4 cut(s) 416, 545, 569, 659
Sau3AI GATC 6 cut(s) 478, 598, 621, 761, 1051, 1081
Sau96I GGNCC 6 cut(s) 379, 513, 579, 720, 736, 784
SchI GAGTC 3 cut(s) 191, 632, 701
ScrFI CCNGG 4 cut(s) 156, 511, 531, 1218
SduI GDGCHC 3 cut(s) 44, 156, 798
SfaNI GCATC 4 cut(s) 143, 184, 940, 1023
SfcI CTRYAG 1 cut(s) 978
SfuI TTCGAA 1 cut(s) 1131
SinI GGWCC 2 cut(s) 379, 579
SmiMI CAYNNNNRTG 6 cut(s) 731, 866, 1047, 1154, 1287, 1328
Sse9I AATT 7 cut(s) 425, 447, 649, 828, 907, 1200, 1229
SspMI CTAG 3 cut(s) 168, 788, 1095
StyD4I CCNGG 4 cut(s) 154, 509, 529, 1216
StyI CCWWGG 4 cut(s) 6, 711, 732, 946
TaaI ACNGT 7 cut(s) 34, 386, 437, 609, 688, 877, 1126
TaqI TCGA 7 cut(s) 60, 260, 597, 780, 1038, 1131, 1300
TaqII GACCGA 1 cut(s) 105
TasI AATT 7 cut(s) 425, 447, 649, 828, 907, 1200, 1229
TfiI GAWTC 1 cut(s) 1076
Tru1I TTAA 2 cut(s) 455, 1181
Tru9I TTAA 2 cut(s) 455, 1181
TscAI CASTG 3 cut(s) 257, 570, 1182
TseFI GTSAC 2 cut(s) 163, 677
TseI GCWGC 4 cut(s) 415, 544, 568, 658
Tsp45I GTSAC 2 cut(s) 163, 677
TspDTI ATGAA 2 cut(s) 1085, 1299
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 3 cut(s) 257, 570, 1182
Van91I CCANNNNNTGG 1 cut(s) 1223
VpaK11BI GGWCC 2 cut(s) 379, 579
XapI RAATTY 2 cut(s) 425, 649
XceI RCATGY 2 cut(s) 853, 1333
XmiI GTMKAC 3 cut(s) 401, 611, 1110
XspI CTAG 3 cut(s) 168, 788, 1095
Zsp2I ATGCAT 2 cut(s) 863, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.