Rw6G034560

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011292
Physical Location & Seq
Forward (+)
59132853 .. 59142201
9349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034560.1

Sequence Viewer

Length: 1203 bp
ATGGCCGAGGTCAGGATCATTTGCACACGAACAGTTGTGAGTACCAGGCCAGTCCAAGTCGAAAAATGCCACCCCTTATCGGTTCTTGACCGGATAATGGAGAAAAAACACCTAAGAATGGTGTTGTACTACCCATCAATGGGTAGTATTTCGGGAGCGCTTATAAGTTTTCCGATAATGACAGGCCGATTGGAGAGGAATGAGAGGGGGCAGTGGTCGGCGAAGTACAATGACGCTAGAGTGAGAATGGTGAAAGCTAGGGCTGAAGGGACTTTGGAGGAGTACAACGCGCGGGAAACATTTCTAGTGCTTGTCTATTGGGAGGAAATGGACCACCATCCCTTATTTTGGTCTACATTTTATGTTCAGCTTACTGAATTTGAGGATGGTGGTTTAGCAATTGGGCTAAGCTGCACTCATCTCCTGGCAGATCTCACTTCGGCAACCGTGTTCCTTAAGGCCTGGGCTGACACAAGCTTCCCTGGACAAATGTTGCAGCCTCCGCTTTTCCACCCACTGCCACCGCATAGACCCGGAAACAGAACACCCGGTCACAGGCCCTATACCTCCTTGATCAACCACTACAAATACTCCATCAAGAAGTCTACGCATCCCGCAAACAGAAAGCACACAACCGTTGCCTTTGCCTTCTCGGAATCCATGGTTCGGGCCTGCATTGCCATGGCCCAGCCCATTGGTGCAACCAACAGATCCAACCCGTCACCCTTCGAGGCCCTAGCTGGGCTCCTTTGGGTCTGCATTAGCAAGGTGAAAGGGATGAGAAATGAGCTTATCAGCATGTCTATGATGCATGGATATGAGAAAGATGGAATCCCACAAAACAACTTATCAGAAGCTGTGAGTTCTATAGGTGAGTTGGTAGCAAAAATGGACAACGAGGGTATCATGGATTTGATCGAGATCCTCGAATGTACCGATGACCAATGTCCTTCGCTGATGAACGATTCAGATCTCATTTGTGCTAGCTTAGAGGCTGTAGACCCGTATTCGACAGTTTTCGAAGATGGGATTGCACCCATATTCGCGTGGCAGGTTCTAATTTTTCCGGCAAAGTCGGAAGACGGTGAATTGAGTAGGGTGGTAATAATTACACTTTCACATGACGAGATGGTCAAGTTATGCGAAGACGATCTTATTTTACACCTGTTTCCGAATATCTTTATAAACGTAAATAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

400

Amino Acids

45.02

Weight (kDa)

5.79

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 49 - 260 1.1e-22 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 164, 1184
AasI GACNNNNNNGTC 1 cut(s) 1130
Acc36I ACCTGC 1 cut(s) 1042
AccI GTMKAC 3 cut(s) 353, 605, 999
AccII CGCG 3 cut(s) 290, 292, 1046
AciI CCGC 4 cut(s) 292, 503, 524, 615
AclWI GGATC 3 cut(s) 23, 705, 916
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 5 cut(s) 43, 128, 227, 284, 934
AfeI AGCGCT 1 cut(s) 159
AflII CTTAAG 1 cut(s) 455
AjnI CCWGG 4 cut(s) 44, 423, 461, 481
AluBI AGCT 8 cut(s) 257, 370, 411, 477, 740, 790, 857, 987
AluI AGCT 8 cut(s) 257, 370, 411, 477, 740, 790, 857, 987
AlwI GGATC 3 cut(s) 23, 705, 916
AlwNI CAGNNNCTG 1 cut(s) 857
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 8 cut(s) 3, 47, 184, 459, 557, 669, 684, 732
ApeKI GCWGC 2 cut(s) 411, 496
ApoI RAATTY 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 2 cut(s) 160, 292
AspS9I GGNCC 5 cut(s) 331, 558, 669, 685, 733
AsuC2I CCSGG 2 cut(s) 534, 549
AsuHPI GGTGA 5 cut(s) 262, 714, 781, 884, 1097
AsuII TTCGAA 1 cut(s) 1020
AsuNHI GCTAGC 1 cut(s) 983
AvaII GGWCC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 886, 919
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 2 cut(s) 1086, 1152
BbvI GCAGC 2 cut(s) 398, 508
BccI CCATC 7 cut(s) 142, 345, 380, 602, 821, 1019, 1123
BciT130I CCWGG 4 cut(s) 46, 425, 463, 483
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 2 cut(s) 534, 549
BfaI CTAG 6 cut(s) 237, 258, 305, 737, 984, 1201
BfmI CTRYAG 2 cut(s) 867, 996
BfoI RGCGCY 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 1042
BglII AGATCT 2 cut(s) 430, 970
BisI GCNGC 2 cut(s) 412, 497
BlpI GCTNAGC 1 cut(s) 407
BlsI GCNGC 2 cut(s) 413, 498
Bme1390I CCNGG 6 cut(s) 46, 425, 463, 483, 534, 549
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 5 cut(s) 331, 558, 669, 685, 733
BmiI GGNNCC 1 cut(s) 746
BmrFI CCNGG 6 cut(s) 46, 425, 463, 483, 534, 549
BmsI GCATC 2 cut(s) 619, 798
BmtI GCTAGC 1 cut(s) 987
BoxI GACNNNNGTC 1 cut(s) 945
BpiI GAAGAC 2 cut(s) 1086, 1152
Bpu1102I GCTNAGC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 1020
BpuMI CCSGG 2 cut(s) 534, 549
BsaBI GATNNNNATC 2 cut(s) 920, 969
BsaJI CCNNGG 5 cut(s) 6, 462, 481, 660, 681
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 675
Bse8I GATNNNNATC 2 cut(s) 920, 969
BseBI CCWGG 4 cut(s) 46, 425, 463, 483
BseDI CCNNGG 5 cut(s) 6, 462, 481, 660, 681
BseGI GGATG 4 cut(s) 337, 391, 610, 783
BseJI GATNNNNATC 2 cut(s) 920, 969
BseMI GCAATG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 398, 508
BseYI CCCAGC 2 cut(s) 687, 740
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 3 cut(s) 290, 292, 1046
BshFI GGCC 8 cut(s) 5, 49, 186, 461, 559, 671, 686, 734
BsiSI CCGG 4 cut(s) 91, 534, 549, 1067
BslFI GGGAC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 8 cut(s) 5, 49, 186, 461, 559, 671, 686, 734
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
Bsp1720I GCTNAGC 1 cut(s) 407
Bsp19I CCATGG 2 cut(s) 660, 681
BspACI CCGC 4 cut(s) 292, 503, 524, 615
BspANI GGCC 8 cut(s) 5, 49, 186, 461, 559, 671, 686, 734
BspFNI CGCG 3 cut(s) 290, 292, 1046
BspLI GGNNCC 1 cut(s) 746
BspMI ACCTGC 1 cut(s) 1042
BspOI GCTAGC 1 cut(s) 987
BspPI GGATC 3 cut(s) 23, 705, 916
BspT104I TTCGAA 1 cut(s) 1020
BspTI CTTAAG 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 675
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 5 cut(s) 6, 462, 481, 660, 681
BssMI GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
BssT1I CCWWGG 2 cut(s) 660, 681
Bst2UI CCWGG 4 cut(s) 46, 425, 463, 483
Bst4CI ACNGT 5 cut(s) 34, 448, 637, 1015, 1085
BstAFI CTTAAG 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 2 cut(s) 673, 985
BstDEI CTNAG 3 cut(s) 113, 407, 988
BstDSI CCRYGG 2 cut(s) 660, 681
BstF5I GGATG 4 cut(s) 337, 391, 610, 783
BstFNI CGCG 3 cut(s) 290, 292, 1046
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 292
BstKTI GATC 8 cut(s) 18, 433, 576, 713, 918, 924, 973, 1153
BstMBI GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 502, 677
BstNI CCWGG 4 cut(s) 46, 425, 463, 483
BstNSI RCATGY 1 cut(s) 802
BstPAI GACNNNNGTC 1 cut(s) 945
BstSCI CCNGG 6 cut(s) 44, 423, 461, 481, 532, 547
BstSFI CTRYAG 2 cut(s) 867, 996
BstUI CGCG 3 cut(s) 290, 292, 1046
BstV1I GCAGC 2 cut(s) 398, 508
BstV2I GAAGAC 2 cut(s) 1086, 1152
BstX2I RGATCY 4 cut(s) 430, 710, 921, 970
BstXI CCANNNNNNTGG 1 cut(s) 695
BstYI RGATCY 4 cut(s) 430, 710, 921, 970
BsuRI GGCC 8 cut(s) 5, 49, 186, 461, 559, 671, 686, 734
BtgI CCRYGG 2 cut(s) 660, 681
BtsCI GGATG 4 cut(s) 337, 391, 610, 783
BtsI GCAGTG 2 cut(s) 218, 515
BtsIMutI CAGTG 2 cut(s) 218, 515
BveI ACCTGC 1 cut(s) 1042
Cac8I GCNNGC 2 cut(s) 673, 985
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 2 cut(s) 160, 292
Cfr13I GGNCC 5 cut(s) 331, 558, 669, 685, 733
CseI GACGC 1 cut(s) 242
Csp6I GTAC 5 cut(s) 42, 127, 226, 283, 933
CviAII CATG 6 cut(s) 661, 682, 799, 812, 907, 1121
CviQI GTAC 5 cut(s) 42, 127, 226, 283, 933
DdeI CTNAG 3 cut(s) 113, 407, 988
DpnI GATC 8 cut(s) 17, 432, 575, 712, 917, 923, 972, 1152
DpnII GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
DrdI GACNNNNNNGTC 1 cut(s) 1130
DseDI GACNNNNNNGTC 1 cut(s) 1130
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 660, 681
Eco147I AGGCCT 1 cut(s) 461
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 331
Eco47III AGCGCT 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 2 cut(s) 558, 733
EcoRII CCWGG 4 cut(s) 44, 423, 461, 481
EcoT14I CCWWGG 2 cut(s) 660, 681
EcoT22I ATGCAT 1 cut(s) 813
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 2 cut(s) 660, 681
FaeI CATG 6 cut(s) 664, 685, 802, 815, 910, 1124
FalI AAGNNNNNCTT 2 cut(s) 1137, 1169
FaqI GGGAC 1 cut(s) 283
FatI CATG 6 cut(s) 660, 681, 798, 811, 906, 1120
FauI CCCGC 2 cut(s) 285, 622
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 3 cut(s) 353, 605, 999
Fnu4HI GCNGC 2 cut(s) 412, 497
FokI GGATG 4 cut(s) 324, 398, 597, 790
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 412, 497
FspBI CTAG 6 cut(s) 237, 258, 305, 737, 984, 1201
GlaI GCGC 2 cut(s) 159, 291
GluI GCNGC 2 cut(s) 412, 497
GsaI CCCAGC 2 cut(s) 691, 744
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 8 cut(s) 5, 49, 186, 461, 559, 671, 686, 734
HapII CCGG 4 cut(s) 91, 534, 549, 1067
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 160, 292
Hin1II CATG 6 cut(s) 664, 685, 802, 815, 910, 1124
Hin6I GCGC 2 cut(s) 158, 290
HinP1I GCGC 2 cut(s) 158, 290
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 3 cut(s) 656, 831, 965
HpaII CCGG 4 cut(s) 91, 534, 549, 1067
HphI GGTGA 5 cut(s) 262, 714, 781, 884, 1097
Hpy166II GTNNAC 3 cut(s) 354, 606, 1000
Hpy188I TCNGA 6 cut(s) 174, 655, 853, 970, 1078, 1173
Hpy188III TCNNGA 5 cut(s) 13, 86, 153, 598, 919
Hpy8I GTNNAC 3 cut(s) 354, 606, 1000
HpyAV CCTTC 4 cut(s) 260, 658, 736, 960
HpyCH4III ACNGT 5 cut(s) 34, 448, 637, 1015, 1085
HpyCH4IV ACGT 1 cut(s) 1188
HpyCH4V TGCA 8 cut(s) 24, 414, 496, 675, 701, 759, 811, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 502, 677
HpyF3I CTNAG 3 cut(s) 113, 407, 988
HpySE526I ACGT 1 cut(s) 1188
Hsp92II CATG 6 cut(s) 664, 685, 802, 815, 910, 1124
HspAI GCGC 2 cut(s) 158, 290
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
LmnI GCTCC 2 cut(s) 155, 750
Lsp1109I GCAGC 2 cut(s) 398, 508
LweI GCATC 2 cut(s) 619, 798
MaeI CTAG 6 cut(s) 237, 258, 305, 737, 984, 1201
MaeII ACGT 1 cut(s) 1188
MaeIII GTNAC 2 cut(s) 551, 720
MalI GATC 8 cut(s) 17, 432, 575, 712, 917, 923, 972, 1152
MboI GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
MboII GAAGA 3 cut(s) 1034, 1091, 1157
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 4 cut(s) 430, 710, 921, 970
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 5 cut(s) 377, 399, 1059, 1088, 1107
MmeI TCCRAC 2 cut(s) 738, 1056
Mph1103I ATGCAT 1 cut(s) 813
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 3 cut(s) 680, 803, 816
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 4 cut(s) 91, 534, 549, 1067
MspR9I CCNGG 6 cut(s) 46, 425, 463, 483, 534, 549
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 4 cut(s) 46, 425, 463, 483
MvnI CGCG 3 cut(s) 290, 292, 1046
MwoI GCNNNNNNNGC 2 cut(s) 502, 677
NciI CCSGG 2 cut(s) 534, 549
NcoI CCATGG 2 cut(s) 660, 681
NdeII GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
NheI GCTAGC 1 cut(s) 983
NlaIII CATG 6 cut(s) 664, 685, 802, 815, 910, 1124
NlaIV GGNNCC 1 cut(s) 746
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 551, 720
NsiI ATGCAT 1 cut(s) 813
NspI RCATGY 1 cut(s) 802
NspV TTCGAA 1 cut(s) 1020
PceI AGGCCT 1 cut(s) 461
PcsI WCGNNNNNNNCGW 2 cut(s) 924, 933
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 656, 831, 965
PkrI GCNGC 2 cut(s) 413, 498
PshAI GACNNNNGTC 1 cut(s) 945
PsiI TTATAA 2 cut(s) 164, 1184
Psp6I CCWGG 4 cut(s) 44, 423, 461, 481
PspFI CCCAGC 2 cut(s) 687, 740
PspGI CCWGG 4 cut(s) 44, 423, 461, 481
PspN4I GGNNCC 1 cut(s) 746
PspPI GGNCC 5 cut(s) 331, 558, 669, 685, 733
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 4 cut(s) 430, 710, 921, 970
RsaI GTAC 5 cut(s) 43, 128, 227, 284, 934
RsaNI GTAC 5 cut(s) 42, 127, 226, 283, 933
RseI CAYNNNNRTG 3 cut(s) 680, 803, 816
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 412, 497
Sau3AI GATC 8 cut(s) 15, 430, 573, 710, 915, 921, 970, 1150
Sau96I GGNCC 5 cut(s) 331, 558, 669, 685, 733
ScrFI CCNGG 6 cut(s) 46, 425, 463, 483, 534, 549
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 2 cut(s) 619, 798
SfcI CTRYAG 2 cut(s) 867, 996
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 3 cut(s) 680, 803, 816
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 5 cut(s) 377, 399, 1059, 1088, 1107
SseBI AGGCCT 1 cut(s) 461
SsiI CCGC 4 cut(s) 292, 503, 524, 615
SspMI CTAG 6 cut(s) 237, 258, 305, 737, 984, 1201
StuI AGGCCT 1 cut(s) 461
StyD4I CCNGG 6 cut(s) 44, 423, 461, 481, 532, 547
StyI CCWWGG 2 cut(s) 660, 681
TaaI ACNGT 5 cut(s) 34, 448, 637, 1015, 1085
TaiI ACGT 1 cut(s) 1191
TaqI TCGA 6 cut(s) 60, 729, 918, 927, 1010, 1020
TasI AATT 5 cut(s) 377, 399, 1059, 1088, 1107
TatI WGTACW 3 cut(s) 126, 225, 282
TfiI GAWTC 3 cut(s) 656, 831, 965
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 218, 522
TseFI GTSAC 2 cut(s) 551, 720
TseI GCWGC 2 cut(s) 411, 496
Tsp45I GTSAC 2 cut(s) 551, 720
TspDTI ATGAA 1 cut(s) 974
TspRI CASTG 2 cut(s) 218, 522
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 802
XmiI GTMKAC 3 cut(s) 353, 605, 999
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 6 cut(s) 237, 258, 305, 737, 984, 1201
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.