Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011292

Physical Location & Seq

Genomic Coordinates Forward (+)

60077686 .. 60078207

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGAAATATGATAAGCTCGTCTATAATGCATGGATATGAGAAAGGTTTTAGGTTTGGACAAACTCAAGGCTTCTTTGGAAATTGCATGGTATATAACAAGGTACATCAAGATGGAATCCCACAAAACAACTTATCAGAAGCTGTGAGTTCTATAGGTGAGTTGGTAGCAAAAATGGACAACGAGGGTATCATGGATTTGATCGAGTGGCTCGAATGTACCGATGACCAATGTCCTTCGCTGATGAACGATTCAGATCTCATTTGTGCTAGCTTAGAGGCTGTAGACCCGTTTTCGACAGTTTTCGAAGATGGGATTAATGCACCCATTCGCGTGTCGTATTATGTAGAGCCGGTGCTGGGGTTAGGGCAGGTTCGAATTTTTCCGGCAAAGTCGGAAGACGGTGAATTGAGTTGGGTGGTAATAATTACACCTTCACATGACGTGATGGTCAAGTTATGTGAAGACGATCTTATTTTACACCTGTCTCCGAATATCTTTATGAACGTAAATAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

173

Amino Acids

19.3

Weight (kDa)

4.36

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29250
fragaria_vesca	FvH4_2g29810
malus_domestica	MD08G1141600.v1.1 MD15G1118100.v1.1
prunus_persica	Prupe.1G471500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0298831 RchiOBHm_Chr6g0298841
rosa_laevigata	RLG00000011480 RLG00000011481
rosa_roxburghii	Rroxscaffold_7G00169290
rosa_rugosa	Rorug06G0283100 Rorug06G0283100
rosa_samantha	Rh6BG402800 Rh6BG402900 Rh6CG408500 Rh6CG408600 Rh6DG395300 Rh6DG395400 Rh6DG395500
rosa_wichuraiana	Rw6G034560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	378
AfaI	GTAC	2 cut(s)	105, 220
AfiI	CCNNNNNNNGG	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	445
AluBI	AGCT	3 cut(s)	18, 143, 273
AluI	AGCT	3 cut(s)	18, 143, 273
Alw26I	GTCTC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	378
AseI	ATTAAT	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	170, 416
AsuII	TTCGAA	2 cut(s)	306, 376
AsuNHI	GCTAGC	1 cut(s)	269
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BbsI	GAAGAC	2 cut(s)	405, 471
BccI	CCATC	3 cut(s)	107, 305, 442
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	270, 520
BfmI	CTRYAG	2 cut(s)	153, 282
BfuAI	ACCTGC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	273
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	405, 471
Bpu14I	TTCGAA	2 cut(s)	306, 376
BpuEI	CTTGAG	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	353, 386
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	492
Bsp119I	TTCGAA	2 cut(s)	306, 376
Bsp143I	GATC	3 cut(s)	201, 256, 469
BspFNI	CGCG	1 cut(s)	333
BspMI	ACCTGC	1 cut(s)	361
BspOI	GCTAGC	1 cut(s)	273
BspT104I	TTCGAA	2 cut(s)	306, 376
BsrFI	RCCGGY	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	352
BssMI	GATC	3 cut(s)	201, 256, 469
Bst4CI	ACNGT	2 cut(s)	301, 404
BstBI	TTCGAA	2 cut(s)	306, 376
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	3 cut(s)	204, 259, 472
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	3 cut(s)	201, 256, 469
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSFI	CTRYAG	2 cut(s)	153, 282
BstUI	CGCG	1 cut(s)	333
BstV2I	GAAGAC	2 cut(s)	405, 471
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	104, 219
CviAII	CATG	4 cut(s)	32, 88, 193, 440
CviJI	RGCY	7 cut(s)	18, 72, 143, 211, 273, 281, 352
CviKI_1	RGCY	7 cut(s)	18, 72, 143, 211, 273, 281, 352
CviQI	GTAC	2 cut(s)	104, 219
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	3 cut(s)	203, 258, 471
DpnII	GATC	3 cut(s)	201, 256, 469
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
EcoT22I	ATGCAT	1 cut(s)	33
FaeI	CATG	4 cut(s)	35, 91, 196, 443
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	4 cut(s)	31, 87, 192, 439
FblI	GTMKAC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	270, 520
GsaI	CCCAGC	1 cut(s)	362
HapII	CCGG	2 cut(s)	353, 386
Hin1II	CATG	4 cut(s)	35, 91, 196, 443
HinfI	GANTC	2 cut(s)	117, 251
HpaII	CCGG	2 cut(s)	353, 386
HphI	GGTGA	2 cut(s)	170, 416
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	139, 256, 397, 492
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	246, 444
HpyCH4III	ACNGT	2 cut(s)	301, 404
HpyCH4IV	ACGT	2 cut(s)	444, 507
HpyCH4V	TGCA	3 cut(s)	31, 87, 323
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	2 cut(s)	444, 507
Hsp92II	CATG	4 cut(s)	35, 91, 196, 443
Kzo9I	GATC	3 cut(s)	201, 256, 469
LpnPI	CCDG	5 cut(s)	344, 356, 366, 399, 497
MaeI	CTAG	2 cut(s)	270, 520
MaeII	ACGT	2 cut(s)	444, 507
MalI	GATC	3 cut(s)	203, 258, 471
MboI	GATC	3 cut(s)	201, 256, 469
MboII	GAAGA	3 cut(s)	320, 410, 476
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	4 cut(s)	82, 378, 407, 426
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	2 cut(s)	178, 271
Mph1103I	ATGCAT	1 cut(s)	33
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	3 cut(s)	36, 111, 332
MspI	CCGG	2 cut(s)	353, 386
MvnI	CGCG	1 cut(s)	333
NdeII	GATC	3 cut(s)	201, 256, 469
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	4 cut(s)	35, 91, 196, 443
NsiI	ATGCAT	1 cut(s)	33
NspV	TTCGAA	2 cut(s)	306, 376
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 219
PfeI	GAWTC	2 cut(s)	117, 251
PshAI	GACNNNNGTC	1 cut(s)	231
PshBI	ATTAAT	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	105, 220
RsaNI	GTAC	2 cut(s)	104, 219
RseI	CAYNNNNRTG	3 cut(s)	36, 111, 332
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	3 cut(s)	201, 256, 469
SfcI	CTRYAG	2 cut(s)	153, 282
SfuI	TTCGAA	2 cut(s)	306, 376
SmiMI	CAYNNNNRTG	3 cut(s)	36, 111, 332
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	4 cut(s)	82, 378, 407, 426
SspMI	CTAG	2 cut(s)	270, 520
TaaI	ACNGT	2 cut(s)	301, 404
TaiI	ACGT	2 cut(s)	447, 510
TaqI	TCGA	5 cut(s)	204, 213, 296, 306, 376
TasI	AATT	4 cut(s)	82, 378, 407, 426
TfiI	GAWTC	2 cut(s)	117, 251
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TspDTI	ATGAA	2 cut(s)	260, 518
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	2 cut(s)	270, 520
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.