MD08G1141600.v1.1

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011292
Physical Location & Seq
Reverse (-)
13957633 .. 13959371
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1141600.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGGCCGAGCTTATCACATTCATCTGCAAACGAACCGTGGTGAGCACGAAGCCTGTCCAAGCCGGAAAAACCTACCCCCTATCCGTTCTTGACCGCCACATGGAAGTGAACCACCTTAGGATGGTGTTGTACTATCCATCAACTGGATTGCCAACAAAGCCTGGTGAAATCACAACGAAGCTCAGAGAGTCCCTCGCGGTAACGCTTACTAATTATCCGATAATCACAGGCCGGTTGCAGAAGAATGACAAAGAGCAGTGGATGATAAAGTGCAATGATGCGGGCGTGAGAATGATTGAGGCTAAGGCCAGAGGGAGTTTGGAGGAGTGGTTAAGAAATGTGGATAGGGAGAAGGAGCTTATGCTTGTTTATTGGGAGGAAATGTACCATAAGCCTTATTTTTGGTCTACATTTTATGTTCAGCTTACTGAATTTGAGGATGGTGGACTAGCAATTGGGCTAAGTTGCACTCATCTCCTTGCAGATCAAACTTGTGCAACCATGTTCATCAAAGCTTGGGCCAACACAACACTCTTCAGCAAAATGATGCACCCTCCATTTTTTTACCCGTTGCCTCAGCGGAGGCCGGGAAACAGAAAGCTGAACCAAAAGCCCTACACTGCCTTGATCAACCACTACAAAACCTCCATCAGCAAGTCAATTCACATCGTAGATGCAAAACACACGACTGTTACTCTCGTTTTTTCGGACGACATGGTTCGGGCTTGCATTGCCATGGCCCAGCCCATTGATGGAACTGACAAATCAAGCCCAACACCGTTTGAGGCCCTTTCTGGGCTCTTTTGGGTTTGTATTAGCAAGGTAAAAGGAGTGAGAAATGGGCTTGTTGACATGTCTATACGCATGGATATGAGAAAAGTTTTGGGGTTAGATAAAGGCTTCTTTGGAAATTGCATGGTTTATAATAAGGTTCATCTAGAGGGTTTCCAAGAAGATAATTTGTCACAAGCTGCAAGTTCTATAGGTGAAGTAGTGGCAAAAATGGACCGTGAGGGAATCATGGATTTGATCGAGTGGCTTGTATGTAAGGATGATCGATCTCAGTCCTTCATGAACGGTTGTGATCTCATCTGTGCTAGCCTAGAGGGCGTAGACCTATTCTCGATTATTTTTGAAGATGTGATAGTACCAATTCGTGTGTCGTGTTATGTTGAGCCAGTGTCCGGATTAGGGCAAGTTTTGATCCTTCCGGCGAAGCCAGGCGATGGTGAGCTAAGTAGGGTGGTAATGGTTACGCTTCCACGTGATGAGGCCATAAAAATGTGTGAACACGATCTTATTTTACGCCTCTCACCGACCATCTTGATGGATGTGAATAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

449

Amino Acids

50.65

Weight (kDa)

6.8

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 350 5.7e-43 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AccB7I CCANNNNNTGG 2 cut(s) 143, 1226
AccI GTMKAC 2 cut(s) 407, 1113
AccII CGCG 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 1184
AciI CCGC 4 cut(s) 94, 197, 281, 580
AclWI GGATC 1 cut(s) 1198
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 520
AcvI CACGTG 1 cut(s) 1265
AfaI GTAC 3 cut(s) 131, 386, 1149
AfiI CCNNNNNNNGG 8 cut(s) 100, 121, 143, 752, 795, 1184, 1191, 1226
AflIII ACRYGT 1 cut(s) 852
AgsI TTSAA 1 cut(s) 1136
AjnI CCWGG 2 cut(s) 160, 1219
AluBI AGCT 8 cut(s) 10, 181, 358, 424, 515, 601, 971, 1234
AluI AGCT 8 cut(s) 10, 181, 358, 424, 515, 601, 971, 1234
Alw21I GWGCWC 1 cut(s) 47
AlwI GGATC 1 cut(s) 1198
Aor13HI TCCGGA 1 cut(s) 1184
AoxI GGCC 8 cut(s) 3, 229, 306, 519, 584, 738, 786, 1272
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 1 cut(s) 431
AspS9I GGNCC 4 cut(s) 519, 739, 787, 1006
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 5 cut(s) 52, 176, 998, 1241, 1305
AsuNHI GCTAGC 1 cut(s) 1097
AvaII GGWCC 1 cut(s) 1006
AxyI CCTNAGG 1 cut(s) 116
BanII GRGCYC 1 cut(s) 801
BbrPI CACGTG 1 cut(s) 1265
Bbv12I GWGCWC 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 958
BccI CCATC 8 cut(s) 115, 145, 434, 656, 746, 1220, 1321, 1328
BciT130I CCWGG 2 cut(s) 162, 1221
BclI TGATCA 1 cut(s) 627
BcnI CCSGG 1 cut(s) 588
BfaI CTAG 5 cut(s) 449, 938, 1098, 1103, 1345
BfmI CTRYAG 1 cut(s) 981
BglI GCCNNNNNGGC 1 cut(s) 1107
BisI GCNGC 1 cut(s) 972
BlsI GCNGC 1 cut(s) 973
Bme1390I CCNGG 3 cut(s) 162, 588, 1221
Bme18I GGWCC 1 cut(s) 1006
BmgT120I GGNCC 4 cut(s) 519, 739, 787, 1006
BmrFI CCNGG 3 cut(s) 162, 588, 1221
BmsI GCATC 3 cut(s) 268, 537, 664
BmtI GCTAGC 1 cut(s) 1101
BplI GAGNNNNNCTC 2 cut(s) 177, 209
Bpu10I CCTNAGC 2 cut(s) 303, 576
BpuMI CCSGG 1 cut(s) 588
Bsa29I ATCGAT 1 cut(s) 1057
BsaAI YACGTR 1 cut(s) 1265
BsaJI CCNNGG 2 cut(s) 36, 735
BsaWI WCCGGW 1 cut(s) 1184
BsaXI ACNNNNNCTCC 6 cut(s) 314, 344, 368, 398, 629, 659
Bsc4I CCNNNNNNNGG 8 cut(s) 100, 121, 143, 752, 795, 1184, 1191, 1226
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 148, 1178
Bse21I CCTNAGG 1 cut(s) 116
Bse3DI GCAATG 2 cut(s) 280, 729
BseAI TCCGGA 1 cut(s) 1184
BseBI CCWGG 2 cut(s) 162, 1221
BseCI ATCGAT 1 cut(s) 1057
BseDI CCNNGG 2 cut(s) 36, 735
BseGI GGATG 5 cut(s) 126, 267, 445, 1057, 1336
BseLI CCNNNNNNNGG 8 cut(s) 100, 121, 143, 752, 795, 1184, 1191, 1226
BseMI GCAATG 2 cut(s) 280, 729
BseMII CTCAG 3 cut(s) 196, 590, 1076
BseNI ACTGG 2 cut(s) 148, 1178
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 958
BseYI CCCAGC 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 8 cut(s) 5, 231, 308, 521, 586, 740, 788, 1274
BshVI ATCGAT 1 cut(s) 1057
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 5 cut(s) 63, 232, 587, 1185, 1211
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 8 cut(s) 100, 121, 143, 752, 795, 1184, 1191, 1226
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 8 cut(s) 5, 231, 308, 521, 586, 740, 788, 1274
Bsp1286I GDGCHC 2 cut(s) 47, 801
Bsp13I TCCGGA 1 cut(s) 1184
Bsp143I GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 4 cut(s) 94, 197, 281, 580
BspANI GGCC 8 cut(s) 5, 231, 308, 521, 586, 740, 788, 1274
BspCNI CTCAG 3 cut(s) 195, 589, 1075
BspDI ATCGAT 1 cut(s) 1057
BspEI TCCGGA 1 cut(s) 1184
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 1071
BspOI GCTAGC 1 cut(s) 1101
BspPI GGATC 1 cut(s) 1198
BsrDI GCAATG 2 cut(s) 280, 729
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 2 cut(s) 148, 1178
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 36, 735
BssMI GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 162, 1221
Bst4CI ACNGT 5 cut(s) 37, 691, 780, 1010, 1079
Bst6I CTCTTC 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 1265
BstC8I GCNNGC 3 cut(s) 283, 727, 1099
BstDEI CTNAG 7 cut(s) 116, 182, 303, 461, 576, 1062, 1235
BstDSI CCRYGG 2 cut(s) 36, 735
BstF5I GGATG 5 cut(s) 126, 267, 445, 1057, 1336
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 8 cut(s) 487, 630, 1032, 1057, 1061, 1087, 1206, 1297
BstMBI GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 157, 731, 1107
BstNI CCWGG 2 cut(s) 162, 1221
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 3 cut(s) 160, 586, 1219
BstSFI CTRYAG 1 cut(s) 981
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 958
BstXI CCANNNNNNTGG 1 cut(s) 1327
Bsu15I ATCGAT 1 cut(s) 1057
Bsu36I CCTNAGG 1 cut(s) 116
BsuRI GGCC 8 cut(s) 5, 231, 308, 521, 586, 740, 788, 1274
BsuTUI ATCGAT 1 cut(s) 1057
BtgI CCRYGG 2 cut(s) 36, 735
BtgZI GCGATG 1 cut(s) 1239
BtsCI GGATG 5 cut(s) 126, 267, 445, 1057, 1336
BtsI GCAGTG 2 cut(s) 263, 618
BtsIMutI CAGTG 3 cut(s) 263, 618, 1185
Cac8I GCNNGC 3 cut(s) 283, 727, 1099
CciI TCATGA 1 cut(s) 1071
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 4 cut(s) 519, 739, 787, 1006
ClaI ATCGAT 1 cut(s) 1057
Csp6I GTAC 3 cut(s) 130, 385, 1148
CviAII CATG 9 cut(s) 100, 502, 715, 736, 853, 865, 916, 1021, 1072
CviQI GTAC 3 cut(s) 130, 385, 1148
DdeI CTNAG 7 cut(s) 116, 182, 303, 461, 576, 1062, 1235
DpnI GATC 8 cut(s) 486, 629, 1031, 1056, 1060, 1086, 1205, 1296
DpnII GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 1006
Eco57I CTGAAG 1 cut(s) 520
Eco72I CACGTG 1 cut(s) 1265
Eco81I CCTNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 2 cut(s) 160, 1219
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 9 cut(s) 103, 505, 718, 739, 856, 868, 919, 1024, 1075
FaqI GGGAC 1 cut(s) 175
FatI CATG 9 cut(s) 99, 501, 714, 735, 852, 864, 915, 1020, 1071
FauI CCCGC 1 cut(s) 274
FbaI TGATCA 1 cut(s) 627
FblI GTMKAC 2 cut(s) 407, 1113
Fnu4HI GCNGC 1 cut(s) 972
FokI GGATG 5 cut(s) 133, 274, 452, 1064, 1343
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 1 cut(s) 972
FspBI CTAG 5 cut(s) 449, 938, 1098, 1103, 1345
GluI GCNGC 1 cut(s) 972
GsaI CCCAGC 1 cut(s) 745
HaeIII GGCC 8 cut(s) 5, 231, 308, 521, 586, 740, 788, 1274
HapII CCGG 5 cut(s) 63, 232, 587, 1185, 1211
Hin1II CATG 9 cut(s) 103, 505, 718, 739, 856, 868, 919, 1024, 1075
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 2 cut(s) 188, 1017
HpaII CCGG 5 cut(s) 63, 232, 587, 1185, 1211
HphI GGTGA 5 cut(s) 52, 176, 998, 1241, 1305
Hpy166II GTNNAC 6 cut(s) 109, 408, 446, 850, 1114, 1289
Hpy188I TCNGA 3 cut(s) 185, 219, 709
Hpy188III TCNNGA 6 cut(s) 89, 938, 1072, 1123, 1185, 1324
Hpy8I GTNNAC 6 cut(s) 109, 408, 446, 850, 1114, 1289
HpyAV CCTTC 3 cut(s) 346, 1078, 1217
HpyCH4III ACNGT 5 cut(s) 37, 691, 780, 1010, 1079
HpyCH4IV ACGT 1 cut(s) 1264
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 731, 1107
HpyF3I CTNAG 7 cut(s) 116, 182, 303, 461, 576, 1062, 1235
HpySE526I ACGT 1 cut(s) 1264
Hsp92II CATG 9 cut(s) 103, 505, 718, 739, 856, 868, 919, 1024, 1075
Kpn2I TCCGGA 1 cut(s) 1184
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 1 cut(s) 958
LweI GCATC 3 cut(s) 268, 537, 664
MaeI CTAG 5 cut(s) 449, 938, 1098, 1103, 1345
MaeII ACGT 1 cut(s) 1264
MaeIII GTNAC 4 cut(s) 199, 691, 963, 1252
MalI GATC 8 cut(s) 486, 629, 1031, 1056, 1060, 1086, 1205, 1296
MboI GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
MboII GAAGA 4 cut(s) 253, 526, 965, 1148
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 47, 801
MluCI AATT 7 cut(s) 211, 431, 453, 660, 910, 958, 1152
MlyI GAGTC 1 cut(s) 197
MroI TCCGGA 1 cut(s) 1184
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 5 cut(s) 104, 734, 869, 1280, 1325
MspA1I CMGCKG 1 cut(s) 580
MspI CCGG 5 cut(s) 63, 232, 587, 1185, 1211
MspR9I CCNGG 3 cut(s) 162, 588, 1221
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 162, 1221
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 157, 731, 1107
NciI CCSGG 1 cut(s) 588
NcoI CCATGG 1 cut(s) 735
NdeII GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
NheI GCTAGC 1 cut(s) 1097
NlaIII CATG 9 cut(s) 103, 505, 718, 739, 856, 868, 919, 1024, 1075
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 963
NspI RCATGY 1 cut(s) 856
PagI TCATGA 1 cut(s) 1071
PciI ACATGT 1 cut(s) 852
PfeI GAWTC 1 cut(s) 1017
PflMI CCANNNNNTGG 2 cut(s) 143, 1226
PkrI GCNGC 1 cut(s) 973
PleI GAGTC 1 cut(s) 196
PmaCI CACGTG 1 cut(s) 1265
PmlI CACGTG 1 cut(s) 1265
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 1265
PscI ACATGT 1 cut(s) 852
PsiI TTATAA 1 cut(s) 924
Psp6I CCWGG 2 cut(s) 160, 1219
PspCI CACGTG 1 cut(s) 1265
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 2 cut(s) 160, 1219
PspPI GGNCC 4 cut(s) 519, 739, 787, 1006
RsaI GTAC 3 cut(s) 131, 386, 1149
RsaNI GTAC 3 cut(s) 130, 385, 1148
RseI CAYNNNNRTG 5 cut(s) 104, 734, 869, 1280, 1325
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 972
Sau3AI GATC 8 cut(s) 484, 627, 1029, 1054, 1058, 1084, 1203, 1294
Sau96I GGNCC 4 cut(s) 519, 739, 787, 1006
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 162, 588, 1221
SduI GDGCHC 2 cut(s) 47, 801
SfaNI GCATC 3 cut(s) 268, 537, 664
SfcI CTRYAG 1 cut(s) 981
SinI GGWCC 1 cut(s) 1006
SmiMI CAYNNNNRTG 5 cut(s) 104, 734, 869, 1280, 1325
Sse9I AATT 7 cut(s) 211, 431, 453, 660, 910, 958, 1152
SsiI CCGC 4 cut(s) 94, 197, 281, 580
SspMI CTAG 5 cut(s) 449, 938, 1098, 1103, 1345
StyD4I CCNGG 3 cut(s) 160, 586, 1219
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 5 cut(s) 37, 691, 780, 1010, 1079
TaiI ACGT 1 cut(s) 1267
TaqI TCGA 3 cut(s) 1032, 1057, 1124
TasI AATT 7 cut(s) 211, 431, 453, 660, 910, 958, 1152
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 1017
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 3 cut(s) 263, 625, 1185
TseFI GTSAC 1 cut(s) 963
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 1 cut(s) 963
TspDTI ATGAA 5 cut(s) 10, 496, 923, 1060, 1088
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 3 cut(s) 263, 625, 1185
Van91I CCANNNNNTGG 2 cut(s) 143, 1226
VpaK11BI GGWCC 1 cut(s) 1006
XapI RAATTY 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 2 cut(s) 316, 749
XmiI GTMKAC 2 cut(s) 407, 1113
XspI CTAG 5 cut(s) 449, 938, 1098, 1103, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.