Rroxscaffold_7G00169290

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011292
Physical Location & Seq
Reverse (-)
9990250 .. 9991062
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169290.1

Sequence Viewer

Length: 813 bp
ATGTTGCAGCCTCCGCTTTTCAACTCATTGCCGGATTTGCCACCACGTAGGCCAGGAAACAAAACACCCGATCACAAACTCTATTCCTCCTTGATCAATCACTACAAATACTCCATCAAGAAGTCTATGCATCCCGCAGACAAAAAGCACACAACCGTTGCCTTTGCCTTCTCGGACTCCATGGTCCGGGCCTGCATTGCCATGGCCCAGGCCATTGGTGCAACCAACAGATCCAACCCGTCACCCTTCGAGGCCCTAGCTGGGCTCTTTTGGGTCTGCATTGGCAAGGTGAAAGGGATGAGAAATGAGCTTATCAGCATGTCTATTTGCATGGATATGAGAAAGGTTTTAGGTTTGGACAAAGGCTTCTTTGGAAATTGCATGGTATATAACAAGGTACATCAAGATGGAATCCCACAAAACAACTTATCAGAAGCTGTGAGTTCTATAGGTGAGTTGGTAGCAAAAATGGACAACGAGGGTATCATGGATTTGATCGAGTGGCTTGAATGTACCGATGACCAATGTCCTTCGCTGATGAACGATTCAGATCTCATTTGTGCTAGCTTAGAGGCTGTAGACCCGTTTTCGACAGTTTTCGAAGATGGGATTGCACCCATTCGCGTGTCGTATTATGTAGAGCCGGTGCTGGGGTTAGGGGAGGTTTTAATTTTTCCGGCAAAGTCGGAAGACGGTGAATTGAGTAGGGTGGTAATAATTACACTTTCACATGACGAGATGGTCAAGTTATGCGAAGACGATCTTATTTTACACCTGTCTCCGAATATCTTTATGAGCGTGAATAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

270

Amino Acids

29.92

Weight (kDa)

5.15

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 67 - 252 2.7e-10 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 740
AccI GTMKAC 1 cut(s) 579
AccII CGCG 1 cut(s) 624
AciI CCGC 2 cut(s) 14, 135
AclWI GGATC 1 cut(s) 225
AfaI GTAC 2 cut(s) 399, 514
AfiI CCNNNNNNNGG 3 cut(s) 186, 261, 650
AgsI TTSAA 2 cut(s) 22, 509
AjnI CCWGG 2 cut(s) 52, 207
AluBI AGCT 4 cut(s) 260, 310, 437, 567
AluI AGCT 4 cut(s) 260, 310, 437, 567
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 5 cut(s) 50, 189, 204, 210, 252
ApeKI GCWGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 184, 189, 205, 253
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 4 cut(s) 234, 301, 464, 707
AsuII TTCGAA 1 cut(s) 600
AsuNHI GCTAGC 1 cut(s) 563
AvaII GGWCC 1 cut(s) 184
BaeI ACNNNNGTAYC 2 cut(s) 466, 499
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 696, 762
BbvI GCAGC 1 cut(s) 19
BccI CCATC 4 cut(s) 122, 401, 599, 733
BciT130I CCWGG 2 cut(s) 54, 209
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 3 cut(s) 257, 564, 811
BfmI CTRYAG 2 cut(s) 447, 576
BglII AGATCT 1 cut(s) 550
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 3 cut(s) 54, 188, 209
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 4 cut(s) 184, 189, 205, 253
BmrFI CCNGG 3 cut(s) 54, 188, 209
BmsI GCATC 1 cut(s) 139
BmtI GCTAGC 1 cut(s) 567
BoxI GACNNNNGTC 1 cut(s) 525
BpiI GAAGAC 2 cut(s) 696, 762
Bpu14I TTCGAA 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 549
BsaJI CCNNGG 3 cut(s) 180, 201, 207
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 261, 650
Bse118I RCCGGY 1 cut(s) 643
Bse3DI GCAATG 2 cut(s) 26, 195
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 2 cut(s) 54, 209
BseDI CCNNGG 3 cut(s) 180, 201, 207
BseGI GGATG 2 cut(s) 130, 303
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 3 cut(s) 186, 261, 650
BseMI GCAATG 2 cut(s) 26, 195
BseXI GCAGC 1 cut(s) 19
BseYI CCCAGC 2 cut(s) 260, 649
Bsh1236I CGCG 1 cut(s) 624
BshFI GGCC 5 cut(s) 52, 191, 206, 212, 254
BsiSI CCGG 4 cut(s) 32, 187, 644, 677
BslI CCNNNNNNNGG 3 cut(s) 186, 261, 650
BsmAI GTCTC 1 cut(s) 783
BsnI GGCC 5 cut(s) 52, 191, 206, 212, 254
Bsp119I TTCGAA 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 6 cut(s) 70, 93, 230, 495, 550, 760
Bsp19I CCATGG 2 cut(s) 180, 201
BspACI CCGC 2 cut(s) 14, 135
BspANI GGCC 5 cut(s) 52, 191, 206, 212, 254
BspFNI CGCG 1 cut(s) 624
BspOI GCTAGC 1 cut(s) 567
BspPI GGATC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 600
BsrDI GCAATG 2 cut(s) 26, 195
BsrFI RCCGGY 1 cut(s) 643
BssAI RCCGGY 1 cut(s) 643
BssECI CCNNGG 3 cut(s) 180, 201, 207
BssMI GATC 6 cut(s) 70, 93, 230, 495, 550, 760
BssT1I CCWWGG 2 cut(s) 180, 201
Bst2UI CCWGG 2 cut(s) 54, 209
Bst4CI ACNGT 3 cut(s) 157, 595, 695
BstBAI YACGTR 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 600
BstC8I GCNNGC 2 cut(s) 193, 565
BstDEI CTNAG 1 cut(s) 568
BstDSI CCRYGG 2 cut(s) 180, 201
BstF5I GGATG 2 cut(s) 130, 303
BstFNI CGCG 1 cut(s) 624
BstKTI GATC 6 cut(s) 73, 96, 233, 498, 553, 763
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 6 cut(s) 70, 93, 230, 495, 550, 760
BstMWI GCNNNNNNNGC 4 cut(s) 13, 37, 197, 218
BstNI CCWGG 2 cut(s) 54, 209
BstNSI RCATGY 1 cut(s) 322
BstPAI GACNNNNGTC 1 cut(s) 525
BstSCI CCNGG 3 cut(s) 52, 186, 207
BstSFI CTRYAG 2 cut(s) 447, 576
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 2 cut(s) 696, 762
BstX2I RGATCY 2 cut(s) 230, 550
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 230, 550
BsuRI GGCC 5 cut(s) 52, 191, 206, 212, 254
BtgI CCRYGG 2 cut(s) 180, 201
BtsCI GGATG 2 cut(s) 130, 303
Cac8I GCNNGC 2 cut(s) 193, 565
CaiI CAGNNNCTG 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 643
Cfr13I GGNCC 4 cut(s) 184, 189, 205, 253
Csp6I GTAC 2 cut(s) 398, 513
CviAII CATG 7 cut(s) 181, 202, 319, 331, 382, 487, 731
CviQI GTAC 2 cut(s) 398, 513
DdeI CTNAG 1 cut(s) 568
DpnI GATC 6 cut(s) 72, 95, 232, 497, 552, 762
DpnII GATC 6 cut(s) 70, 93, 230, 495, 550, 760
DrdI GACNNNNNNGTC 2 cut(s) 182, 740
DseDI GACNNNNNNGTC 2 cut(s) 182, 740
Eco130I CCWWGG 2 cut(s) 180, 201
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 52, 207
EcoT14I CCWWGG 2 cut(s) 180, 201
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 2 cut(s) 180, 201
FaeI CATG 7 cut(s) 184, 205, 322, 334, 385, 490, 734
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FatI CATG 7 cut(s) 180, 201, 318, 330, 381, 486, 730
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 2 cut(s) 117, 310
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 3 cut(s) 257, 564, 811
GluI GCNGC 1 cut(s) 8
GsaI CCCAGC 2 cut(s) 264, 653
HaeIII GGCC 5 cut(s) 52, 191, 206, 212, 254
HapII CCGG 4 cut(s) 32, 187, 644, 677
Hin1II CATG 7 cut(s) 184, 205, 322, 334, 385, 490, 734
HinfI GANTC 3 cut(s) 176, 411, 545
HpaII CCGG 4 cut(s) 32, 187, 644, 677
HphI GGTGA 4 cut(s) 234, 301, 464, 707
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 5 cut(s) 175, 433, 550, 688, 783
Hpy188III TCNNGA 2 cut(s) 118, 404
Hpy8I GTNNAC 1 cut(s) 580
HpyAV CCTTC 3 cut(s) 178, 256, 540
HpyCH4III ACNGT 3 cut(s) 157, 595, 695
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 8 cut(s) 7, 130, 195, 221, 279, 330, 381, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 37, 197, 218
HpyF3I CTNAG 1 cut(s) 568
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 7 cut(s) 184, 205, 322, 334, 385, 490, 734
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 6 cut(s) 70, 93, 230, 495, 550, 760
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 139
MaeI CTAG 3 cut(s) 257, 564, 811
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 240
MalI GATC 6 cut(s) 72, 95, 232, 497, 552, 762
MboI GATC 6 cut(s) 70, 93, 230, 495, 550, 760
MboII GAAGA 3 cut(s) 614, 701, 767
MflI RGATCY 2 cut(s) 230, 550
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 376, 669, 698, 717
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 258, 666
MnlI CCTC 6 cut(s) 21, 97, 244, 472, 565, 655
Mph1103I ATGCAT 1 cut(s) 132
MseI TTAA 1 cut(s) 668
MslI CAYNNNNRTG 4 cut(s) 200, 335, 405, 623
MspI CCGG 4 cut(s) 32, 187, 644, 677
MspR9I CCNGG 3 cut(s) 54, 188, 209
MvaI CCWGG 2 cut(s) 54, 209
MvnI CGCG 1 cut(s) 624
MwoI GCNNNNNNNGC 4 cut(s) 13, 37, 197, 218
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 2 cut(s) 180, 201
NdeII GATC 6 cut(s) 70, 93, 230, 495, 550, 760
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 7 cut(s) 184, 205, 322, 334, 385, 490, 734
NmuCI GTSAC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 1 cut(s) 322
NspV TTCGAA 1 cut(s) 600
PfeI GAWTC 2 cut(s) 411, 545
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 52, 207
PspFI CCCAGC 2 cut(s) 260, 649
PspGI CCWGG 2 cut(s) 52, 207
PspPI GGNCC 4 cut(s) 184, 189, 205, 253
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 230, 550
RsaI GTAC 2 cut(s) 399, 514
RsaNI GTAC 2 cut(s) 398, 513
RseI CAYNNNNRTG 4 cut(s) 200, 335, 405, 623
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 6 cut(s) 70, 93, 230, 495, 550, 760
Sau96I GGNCC 4 cut(s) 184, 189, 205, 253
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 54, 188, 209
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 447, 576
SfuI TTCGAA 1 cut(s) 600
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 4 cut(s) 200, 335, 405, 623
Sse9I AATT 4 cut(s) 376, 669, 698, 717
SsiI CCGC 2 cut(s) 14, 135
SspMI CTAG 3 cut(s) 257, 564, 811
StyD4I CCNGG 3 cut(s) 52, 186, 207
StyI CCWWGG 2 cut(s) 180, 201
TaaI ACNGT 3 cut(s) 157, 595, 695
TaiI ACGT 1 cut(s) 49
TaqI TCGA 4 cut(s) 249, 498, 590, 600
TasI AATT 4 cut(s) 376, 669, 698, 717
TfiI GAWTC 2 cut(s) 411, 545
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 3 cut(s) 257, 564, 811
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.