Rh6BG402900

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011292
Physical Location & Seq
Forward (+)
62957605 .. 62958334
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG402900.1

Sequence Viewer

Length: 606 bp
ATGGCCCAGACCATTGGTGCAACCAACAGATCCAACCCGTCACCCTTCGAGGCCCTAGCTGGGCTCTTTTGGGTCTGCATTAGCAAGGGGATGAGAAATGAGCTTATCAACATGTCTATATGCATGGATATGAGAAAGGTTTTAGGTTGGGACAAAGGCTTCTTTGGAAATTGCATGGTATATAACAAGGTACATCAAGATGGAATCCCACAAAACAACTTATCAGAAGCTGTGAGTTCTATAGGTGAGTTGGTAGCAAAAATGGACAACGAGGGTGTCATGGATTTGATCGAGCGGCTCGAATGTACCGATGACCAATGTCCTTCGCTGATGAACGATTCAGATCTCATTTGTGCTAGCTTAGAGGCTGTAGACCCGTTTTCGACAGTTTTCGAAGATGGGATTGCACCCATTCGCATGTCGTATTATGTAGAGCCGGTGTTGGGGTTAGGGCAGGTTCTAATTTTTCCAGCAAAGCCGGAAGACGGTGAATTGAGTAGGGTGGTAATAATTACACTTTCACATGACGAGATGGTCAAGTTATGTGAAGACGATCTTATTTTACTCCTATCTCTGAATATCTTTATGAACGTGAATAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

201

Amino Acids

22.27

Weight (kDa)

4.34

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 183 1.3e-07 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 445
AccBSI CCGCTC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 372
AciI CCGC 1 cut(s) 295
AclWI GGATC 1 cut(s) 24
AfaI GTAC 2 cut(s) 192, 307
AfiI CCNNNNNNNGG 3 cut(s) 60, 443, 485
AflIII ACRYGT 1 cut(s) 111
AluBI AGCT 4 cut(s) 59, 103, 230, 360
AluI AGCT 4 cut(s) 59, 103, 230, 360
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 2 cut(s) 3, 51
AspS9I GGNCC 2 cut(s) 4, 52
AsuHPI GGTGA 3 cut(s) 33, 257, 500
AsuII TTCGAA 1 cut(s) 393
AsuNHI GCTAGC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 2 cut(s) 489, 555
BccI CCATC 3 cut(s) 194, 392, 526
BfaI CTAG 3 cut(s) 56, 357, 604
BfmI CTRYAG 2 cut(s) 240, 369
BfuAI ACCTGC 1 cut(s) 445
BglII AGATCT 1 cut(s) 343
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
BmgT120I GGNCC 2 cut(s) 4, 52
BmtI GCTAGC 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 318
BpiI GAAGAC 2 cut(s) 489, 555
Bpu14I TTCGAA 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 342
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 443, 485
Bse118I RCCGGY 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 342
BseGI GGATG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 60, 443, 485
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 2 cut(s) 5, 53
BsiSI CCGG 2 cut(s) 437, 479
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 60, 443, 485
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 5, 53
Bsp119I TTCGAA 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 4 cut(s) 29, 288, 343, 553
BspACI CCGC 1 cut(s) 295
BspANI GGCC 2 cut(s) 5, 53
BspMI ACCTGC 1 cut(s) 445
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 393
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 436
BssMI GATC 4 cut(s) 29, 288, 343, 553
Bst4CI ACNGT 2 cut(s) 388, 488
BstBI TTCGAA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 4 cut(s) 32, 291, 346, 556
BstMBI GATC 4 cut(s) 29, 288, 343, 553
BstNSI RCATGY 2 cut(s) 115, 421
BstPAI GACNNNNGTC 1 cut(s) 318
BstSFI CTRYAG 2 cut(s) 240, 369
BstV2I GAAGAC 2 cut(s) 489, 555
BstX2I RGATCY 2 cut(s) 29, 343
BstXI CCANNNNNNTGG 1 cut(s) 14
BstYI RGATCY 2 cut(s) 29, 343
BsuRI GGCC 2 cut(s) 5, 53
BtsCI GGATG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 358
CaiI CAGNNNCTG 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 4, 52
Csp6I GTAC 2 cut(s) 191, 306
CviAII CATG 6 cut(s) 112, 124, 175, 280, 418, 524
CviQI GTAC 2 cut(s) 191, 306
DdeI CTNAG 1 cut(s) 361
DpnI GATC 4 cut(s) 31, 290, 345, 555
DpnII GATC 4 cut(s) 29, 288, 343, 553
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 6 cut(s) 115, 127, 178, 283, 421, 527
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 1 cut(s) 164
FatI CATG 6 cut(s) 111, 123, 174, 279, 417, 523
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 3 cut(s) 56, 357, 604
GluI GCNGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 5, 53
HapII CCGG 2 cut(s) 437, 479
Hin1II CATG 6 cut(s) 115, 127, 178, 283, 421, 527
HinfI GANTC 2 cut(s) 204, 338
HpaII CCGG 2 cut(s) 437, 479
HphI GGTGA 3 cut(s) 33, 257, 500
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 3 cut(s) 226, 343, 576
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 55, 333
HpyCH4III ACNGT 2 cut(s) 388, 488
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 5 cut(s) 20, 78, 123, 174, 407
HpyF3I CTNAG 1 cut(s) 361
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 6 cut(s) 115, 127, 178, 283, 421, 527
Kzo9I GATC 4 cut(s) 29, 288, 343, 553
LpnPI CCDG 6 cut(s) 20, 45, 440, 450, 483, 492
MaeI CTAG 3 cut(s) 56, 357, 604
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 31, 290, 345, 555
MbiI CCGCTC 1 cut(s) 295
MboI GATC 4 cut(s) 29, 288, 343, 553
MboII GAAGA 3 cut(s) 407, 494, 560
MflI RGATCY 2 cut(s) 29, 343
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 4 cut(s) 169, 462, 491, 510
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 43, 265, 358
Mph1103I ATGCAT 1 cut(s) 125
MslI CAYNNNNRTG 3 cut(s) 128, 198, 416
MspI CCGG 2 cut(s) 437, 479
NdeII GATC 4 cut(s) 29, 288, 343, 553
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 6 cut(s) 115, 127, 178, 283, 421, 527
NmuCI GTSAC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 125
NspI RCATGY 2 cut(s) 115, 421
NspV TTCGAA 1 cut(s) 393
PciI ACATGT 1 cut(s) 111
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 306
PfeI GAWTC 2 cut(s) 204, 338
PkrI GCNGC 1 cut(s) 297
PscI ACATGT 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 4, 52
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 29, 343
RsaI GTAC 2 cut(s) 192, 307
RsaNI GTAC 2 cut(s) 191, 306
RseI CAYNNNNRTG 3 cut(s) 128, 198, 416
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 4 cut(s) 29, 288, 343, 553
Sau96I GGNCC 2 cut(s) 4, 52
SduI GDGCHC 1 cut(s) 66
SfcI CTRYAG 2 cut(s) 240, 369
SfuI TTCGAA 1 cut(s) 393
SmiMI CAYNNNNRTG 3 cut(s) 128, 198, 416
Sse9I AATT 4 cut(s) 169, 462, 491, 510
SsiI CCGC 1 cut(s) 295
SspMI CTAG 3 cut(s) 56, 357, 604
TaaI ACNGT 2 cut(s) 388, 488
TaiI ACGT 1 cut(s) 594
TaqI TCGA 5 cut(s) 48, 291, 300, 383, 393
TasI AATT 4 cut(s) 169, 462, 491, 510
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 2 cut(s) 204, 338
TseFI GTSAC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 347, 602
XceI RCATGY 2 cut(s) 115, 421
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 3 cut(s) 56, 357, 604
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.