RchiOBHm_Chr6g0298831

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011292
Physical Location & Seq
Forward (+)
60076757 .. 60077640
884 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26829

Sequence Viewer

Length: 774 bp
ATGGCCGAGGTCAGAATCATTTGCACACGCACAGTTGTGAGTACGAGGCCAGTCCAAGTCGGAAAATGCCACGCCTTATCGGTTCTTGACCGGATAATGGAGAAGAAACACCTAAGAATGGTGTTGTATTACCCATCAATGGGTGTGACAGAGCCCGGTGAAGTCACCAGGAGGCGTAGAGAGTCTATTTCGGGAGAGCTTATAAGTTTTCCAATAATGACAGGCCGATTGGAGAGGAATGAGAGGGGGCAGTGGTCGGCGAAGTACAATGACGCTGGAGTGAGAATGGTGGAAGCTAGGGCTGAAGGGACTTTGGAGGAGTGGCTTAGAAATGTGGATAGGGAGAAGGAGCTTATGCTTGTCTATTGGGAGGAAATGGACCACCATCCCTTATTTTGGTCTACATTTTATCTTACTGAATTTGAGGATGGTGGTTTAGCAATTGGGCTAAGCGGCACTCATCTCCTGGCAGATCTCACTTCGGCAACCGTGTTCCTTAAGGCCTGGGCTGACACAAGCTTCCCCGGACAAATGTTGCAGCCTCCGCTTTTCCACCCACTGCCACCGCGTAGACCCGGAAACAGAACACCCGATCACAGGCCCTATACCTCCTTGATCAATCACTACAAATACTCCATCAAGAAGTCTATGCATCCCGCAAACAAAAAGCACACAACCGTTGCCTTTGCCTTCTCGGAATCCATGGTTCGGGCCTGCATTGCCATGGCCCAGCCCATTGGTGCAACCAACAGATCCAACCCGTCACCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

257

Amino Acids

29.35

Weight (kDa)

9.27

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 3 - 184 2.2e-25 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccI GTMKAC 2 cut(s) 401, 571
AccII CGCG 1 cut(s) 568
AciI CCGC 4 cut(s) 453, 545, 566, 657
AclWI GGATC 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 43, 266
AfiI CCNNNNNNNGG 7 cut(s) 97, 118, 139, 140, 396, 597, 708
AflII CTTAAG 1 cut(s) 497
AjnI CCWGG 3 cut(s) 167, 465, 503
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 4 cut(s) 199, 296, 352, 519
AluI AGCT 4 cut(s) 199, 296, 352, 519
AlwI GGATC 1 cut(s) 747
AoxI GGCC 7 cut(s) 3, 47, 223, 501, 599, 711, 726
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 1 cut(s) 419
AspS9I GGNCC 4 cut(s) 379, 600, 711, 727
AsuC2I CCSGG 3 cut(s) 156, 525, 576
AsuHPI GGTGA 3 cut(s) 157, 170, 756
AvaII GGWCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 550
BccI CCATC 4 cut(s) 142, 393, 422, 644
BciT130I CCWGG 3 cut(s) 169, 467, 505
BclI TGATCA 1 cut(s) 615
BcnI CCSGG 3 cut(s) 156, 525, 576
BfaI CTAG 2 cut(s) 297, 772
BfrI CTTAAG 1 cut(s) 497
BglII AGATCT 1 cut(s) 472
BisI GCNGC 2 cut(s) 454, 539
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 2 cut(s) 455, 540
Bme1390I CCNGG 6 cut(s) 156, 169, 467, 505, 525, 576
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 4 cut(s) 379, 600, 711, 727
BmrFI CCNGG 6 cut(s) 156, 169, 467, 505, 525, 576
BmsI GCATC 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 449
BpuMI CCSGG 3 cut(s) 156, 525, 576
BsaJI CCNNGG 5 cut(s) 6, 504, 523, 702, 723
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 7 cut(s) 97, 118, 139, 140, 396, 597, 708
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 717
BseBI CCWGG 3 cut(s) 169, 467, 505
BseDI CCNNGG 5 cut(s) 6, 504, 523, 702, 723
BseGI GGATG 3 cut(s) 385, 433, 652
BseLI CCNNNNNNNGG 7 cut(s) 97, 118, 139, 140, 396, 597, 708
BseMI GCAATG 1 cut(s) 717
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 550
BseYI CCCAGC 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 568
BshFI GGCC 7 cut(s) 5, 49, 225, 503, 601, 713, 728
BsiSI CCGG 4 cut(s) 91, 156, 525, 576
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 7 cut(s) 97, 118, 139, 140, 396, 597, 708
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 7 cut(s) 5, 49, 225, 503, 601, 713, 728
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 4 cut(s) 472, 592, 615, 752
Bsp1720I GCTNAGC 1 cut(s) 449
Bsp19I CCATGG 2 cut(s) 702, 723
BspACI CCGC 4 cut(s) 453, 545, 566, 657
BspANI GGCC 7 cut(s) 5, 49, 225, 503, 601, 713, 728
BspFNI CGCG 1 cut(s) 568
BspPI GGATC 1 cut(s) 747
BspTI CTTAAG 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 717
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 5 cut(s) 6, 504, 523, 702, 723
BssMI GATC 4 cut(s) 472, 592, 615, 752
BssT1I CCWWGG 2 cut(s) 702, 723
Bst2UI CCWGG 3 cut(s) 169, 467, 505
Bst4CI ACNGT 3 cut(s) 34, 490, 679
BstAFI CTTAAG 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 3 cut(s) 113, 326, 449
BstDSI CCRYGG 2 cut(s) 702, 723
BstF5I GGATG 3 cut(s) 385, 433, 652
BstFNI CGCG 1 cut(s) 568
BstKTI GATC 4 cut(s) 475, 595, 618, 755
BstMBI GATC 4 cut(s) 472, 592, 615, 752
BstMWI GCNNNNNNNGC 2 cut(s) 544, 719
BstNI CCWGG 3 cut(s) 169, 467, 505
BstSCI CCNGG 6 cut(s) 154, 167, 465, 503, 523, 574
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 1 cut(s) 550
BstX2I RGATCY 2 cut(s) 472, 752
BstXI CCANNNNNNTGG 1 cut(s) 737
BstYI RGATCY 2 cut(s) 472, 752
BsuRI GGCC 7 cut(s) 5, 49, 225, 503, 601, 713, 728
BtgI CCRYGG 2 cut(s) 702, 723
BtsCI GGATG 3 cut(s) 385, 433, 652
BtsI GCAGTG 2 cut(s) 257, 557
BtsIMutI CAGTG 2 cut(s) 257, 557
Cac8I GCNNGC 1 cut(s) 715
Cfr13I GGNCC 4 cut(s) 379, 600, 711, 727
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 42, 265
CviAII CATG 2 cut(s) 703, 724
CviQI GTAC 2 cut(s) 42, 265
DdeI CTNAG 3 cut(s) 113, 326, 449
DpnI GATC 4 cut(s) 474, 594, 617, 754
DpnII GATC 4 cut(s) 472, 592, 615, 752
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 702, 723
Eco147I AGGCCT 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 600
EcoRII CCWGG 3 cut(s) 167, 465, 503
EcoT14I CCWWGG 2 cut(s) 702, 723
EcoT22I ATGCAT 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 702, 723
FaeI CATG 2 cut(s) 706, 727
FaiI YATR 6 cut(s) 203, 356, 606, 650, 704, 725
FaqI GGGAC 1 cut(s) 322
FatI CATG 2 cut(s) 702, 723
FauI CCCGC 1 cut(s) 664
FbaI TGATCA 1 cut(s) 615
FblI GTMKAC 2 cut(s) 401, 571
Fnu4HI GCNGC 2 cut(s) 454, 539
FokI GGATG 3 cut(s) 372, 440, 639
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 454, 539
FspBI CTAG 2 cut(s) 297, 772
GluI GCNGC 2 cut(s) 454, 539
GsaI CCCAGC 1 cut(s) 733
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 7 cut(s) 5, 49, 225, 503, 601, 713, 728
HapII CCGG 4 cut(s) 91, 156, 525, 576
HgaI GACGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 706, 727
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 3 cut(s) 15, 182, 698
HpaII CCGG 4 cut(s) 91, 156, 525, 576
HphI GGTGA 3 cut(s) 157, 170, 756
Hpy166II GTNNAC 2 cut(s) 402, 572
Hpy188I TCNGA 3 cut(s) 14, 62, 697
Hpy188III TCNNGA 3 cut(s) 86, 192, 640
Hpy8I GTNNAC 2 cut(s) 402, 572
HpyAV CCTTC 3 cut(s) 299, 340, 700
HpyCH4III ACNGT 3 cut(s) 34, 490, 679
HpyCH4V TGCA 5 cut(s) 24, 538, 652, 717, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 719
HpyF3I CTNAG 3 cut(s) 113, 326, 449
Hsp92II CATG 2 cut(s) 706, 727
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 4 cut(s) 472, 592, 615, 752
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 1 cut(s) 661
MaeI CTAG 2 cut(s) 297, 772
MaeIII GTNAC 3 cut(s) 145, 163, 762
MalI GATC 4 cut(s) 474, 594, 617, 754
MboI GATC 4 cut(s) 472, 592, 615, 752
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 2 cut(s) 472, 752
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 419, 441
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 9 cut(s) 39, 165, 228, 237, 310, 364, 418, 552, 619
Mph1103I ATGCAT 1 cut(s) 654
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 2 cut(s) 35, 722
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 4 cut(s) 91, 156, 525, 576
MspR9I CCNGG 6 cut(s) 156, 169, 467, 505, 525, 576
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 3 cut(s) 169, 467, 505
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 2 cut(s) 544, 719
NciI CCSGG 3 cut(s) 156, 525, 576
NcoI CCATGG 2 cut(s) 702, 723
NdeII GATC 4 cut(s) 472, 592, 615, 752
NlaIII CATG 2 cut(s) 706, 727
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 145, 163, 762
NsiI ATGCAT 1 cut(s) 654
OliI CACNNNNGTG 1 cut(s) 35
PceI AGGCCT 1 cut(s) 503
PfeI GAWTC 2 cut(s) 15, 698
PkrI GCNGC 2 cut(s) 455, 540
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 167, 465, 503
PspFI CCCAGC 1 cut(s) 729
PspGI CCWGG 3 cut(s) 167, 465, 503
PspPI GGNCC 4 cut(s) 379, 600, 711, 727
PsuI RGATCY 2 cut(s) 472, 752
RsaI GTAC 2 cut(s) 43, 266
RsaNI GTAC 2 cut(s) 42, 265
RseI CAYNNNNRTG 2 cut(s) 35, 722
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 2 cut(s) 454, 539
Sau3AI GATC 4 cut(s) 472, 592, 615, 752
Sau96I GGNCC 4 cut(s) 379, 600, 711, 727
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 6 cut(s) 156, 169, 467, 505, 525, 576
SduI GDGCHC 1 cut(s) 156
SetI ASST 7 cut(s) 12, 114, 201, 298, 354, 521, 611
SfaNI GCATC 1 cut(s) 661
SinI GGWCC 1 cut(s) 379
SmiMI CAYNNNNRTG 2 cut(s) 35, 722
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 2 cut(s) 419, 441
SseBI AGGCCT 1 cut(s) 503
SsiI CCGC 4 cut(s) 453, 545, 566, 657
SspMI CTAG 2 cut(s) 297, 772
StuI AGGCCT 1 cut(s) 503
StyD4I CCNGG 6 cut(s) 154, 167, 465, 503, 523, 574
StyI CCWWGG 2 cut(s) 702, 723
TaaI ACNGT 3 cut(s) 34, 490, 679
TasI AATT 2 cut(s) 419, 441
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 2 cut(s) 15, 698
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 257, 564
TseFI GTSAC 3 cut(s) 145, 163, 762
TseI GCWGC 1 cut(s) 538
Tsp45I GTSAC 3 cut(s) 145, 163, 762
TspRI CASTG 2 cut(s) 257, 564
Vha464I CTTAAG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 1 cut(s) 419
XmiI GTMKAC 2 cut(s) 401, 571
XspI CTAG 2 cut(s) 297, 772
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.