RLG00000011481

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011292
Physical Location & Seq
Reverse (-)
9843435 .. 9843926
492 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011481

Sequence Viewer

Length: 492 bp
ATGGCCGAGGTCAGAATCATTTGCACACGAACAGTTGTGAGTACGAGGCCAGTCCAAGTCGGAAAATGCCACCCCTTATCGGTTCTTGACCGGATAATGAAGAAGAAACACCCAAGAATGGTGTTGTATTACCCATCAATGGGTGTGACAGAGCCCGGTGAAGTCACCAGGAGGCGTAGAGAGTCTATTTCGGGAGCGCTTATAAGTTTTCCGATAATGACAGGCCGATTGGAGAGGAATGAGAGGGGGCAGTGGTCGACGAAGTACAATGACGCTGGAGTGAGGATGGTGGAAGCTAGGGCTAAAGGGACTCTGGAGGAGTGGCTTAGAAATGTGGATAGGGAGAAGGAGCTTATGCTTGTCTATTGGGAGGAAATGGACCACCATCCCTTATTTTGGCCTGCATTTTATGTTCAGGCATTACTCTTTCAGCGACCAAAATATTTGCACTCATCTCCTGGCAGATCCCACTTCGGCAACCGTGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

164

Amino Acids

19.11

Weight (kDa)

10.0

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 3 - 141 5.3e-16 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccI GTMKAC 1 cut(s) 257
AclWI GGATC 1 cut(s) 459
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 43, 266
AfeI AGCGCT 1 cut(s) 198
AfiI CCNNNNNNNGG 5 cut(s) 79, 118, 139, 140, 396
AjnI CCWGG 2 cut(s) 167, 457
AluBI AGCT 2 cut(s) 296, 352
AluI AGCT 2 cut(s) 296, 352
AlwI GGATC 1 cut(s) 459
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 4 cut(s) 3, 47, 223, 398
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 157, 170
AvaII GGWCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 156
BccI CCATC 3 cut(s) 142, 280, 393
BciT130I CCWGG 2 cut(s) 169, 459
BcnI CCSGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 200
Bme1390I CCNGG 3 cut(s) 156, 169, 459
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmrFI CCNGG 3 cut(s) 156, 169, 459
BpmI CTGGAG 2 cut(s) 297, 335
BpuMI CCSGG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 118, 139, 140, 396
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 2 cut(s) 169, 459
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 291, 385
BseLI CCNNNNNNNGG 5 cut(s) 79, 118, 139, 140, 396
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 332
BshFI GGCC 4 cut(s) 5, 49, 225, 400
BsiSI CCGG 2 cut(s) 91, 156
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 5 cut(s) 79, 118, 139, 140, 396
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 4 cut(s) 5, 49, 225, 400
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 464
BspANI GGCC 4 cut(s) 5, 49, 225, 400
BspPI GGATC 1 cut(s) 459
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 169, 459
Bst4CI ACNGT 2 cut(s) 34, 482
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 291, 385
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 467
BstMBI GATC 1 cut(s) 464
BstNI CCWGG 2 cut(s) 169, 459
BstSCI CCNGG 3 cut(s) 154, 167, 457
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 4 cut(s) 5, 49, 225, 400
BtsCI GGATG 2 cut(s) 291, 385
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 379
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 42, 265
CviJI RGCY 9 cut(s) 5, 49, 154, 225, 296, 302, 325, 352, 400
CviKI_1 RGCY 9 cut(s) 5, 49, 154, 225, 296, 302, 325, 352, 400
CviQI GTAC 2 cut(s) 42, 265
DdeI CTNAG 1 cut(s) 326
DpnI GATC 1 cut(s) 466
DpnII GATC 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 379
Eco47III AGCGCT 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 167, 457
EcoT38I GRGCYC 1 cut(s) 156
FaiI YATR 3 cut(s) 203, 356, 411
FaqI GGGAC 1 cut(s) 322
FblI GTMKAC 1 cut(s) 257
FokI GGATG 2 cut(s) 298, 372
FriOI GRGCYC 1 cut(s) 156
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 198
GsuI CTGGAG 2 cut(s) 297, 335
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 4 cut(s) 5, 49, 225, 400
HapII CCGG 2 cut(s) 91, 156
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 199
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 3 cut(s) 15, 182, 310
HpaII CCGG 2 cut(s) 91, 156
HphI GGTGA 2 cut(s) 157, 170
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 14, 62, 213
Hpy188III TCNNGA 3 cut(s) 86, 192, 314
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 34, 482
HpyCH4V TGCA 3 cut(s) 24, 404, 448
HpyF3I CTNAG 1 cut(s) 326
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 464
LmnI GCTCC 2 cut(s) 194, 349
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 145, 163
MalI GATC 1 cut(s) 466
MboI GATC 1 cut(s) 464
MboII GAAGA 2 cut(s) 112, 115
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 156
MlyI GAGTC 2 cut(s) 191, 304
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 7 cut(s) 39, 165, 228, 237, 276, 310, 364
MseI TTAA 1 cut(s) 490
MspI CCGG 2 cut(s) 91, 156
MspR9I CCNGG 3 cut(s) 156, 169, 459
MvaI CCWGG 2 cut(s) 169, 459
NciI CCSGG 1 cut(s) 156
NdeII GATC 1 cut(s) 464
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 145, 163
PfeI GAWTC 1 cut(s) 15
PleI GAGTC 2 cut(s) 190, 304
PpsI GAGTC 2 cut(s) 190, 304
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 167, 457
PspGI CCWGG 2 cut(s) 167, 457
PspPI GGNCC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 2 cut(s) 43, 266
RsaNI GTAC 2 cut(s) 42, 265
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 490
Sau3AI GATC 1 cut(s) 464
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 2 cut(s) 191, 304
ScrFI CCNGG 3 cut(s) 156, 169, 459
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 12, 298, 354
SinI GGWCC 1 cut(s) 379
SspI AATATT 1 cut(s) 443
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 154, 167, 457
TaaI ACNGT 2 cut(s) 34, 482
TaqI TCGA 1 cut(s) 257
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 2 cut(s) 145, 163
Tsp45I GTSAC 2 cut(s) 145, 163
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.