Rh6CG408500

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011292
Physical Location & Seq
Forward (+)
59389957 .. 59401347
11391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG408500.1

Sequence Viewer

Length: 297 bp
ATGACAGGCCGATTGGAGAGGAATGAGAGGGGGCAGTGGTCGACGAAGTACAATGACGCTGGAGTGAGAATGGTGGAAGCTAGGGCTGAAGGGACTTTGGAGGAGTGGCTTAGAAATGTGGATAGGGAGAAGGAGCTTATGCTTGTCTATTGGGAGGAAATGGACCACCATCCCTTATTTTGGCCTGGGCTGACACAAGCTTCCCCGGACAAATGTTGCAGCCTCCGCTTTTCCACCCACTGCCACCGCATAGACCCGGAAACAGAACATCCGATCACAGGCCCTATACCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

98

Amino Acids

11.52

Weight (kDa)

5.48

Isoelectric Point (pI)

24.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 63 5.7e-07 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 41
AciI CCGC 2 cut(s) 226, 247
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 180, 278
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 3 cut(s) 80, 136, 200
AluI AGCT 3 cut(s) 80, 136, 200
AoxI GGCC 3 cut(s) 7, 182, 280
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 163, 281
AsuC2I CCSGG 2 cut(s) 206, 257
AvaII GGWCC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 2 cut(s) 206, 257
BfaI CTAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 3 cut(s) 186, 206, 257
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 281
BmrFI CCNGG 3 cut(s) 186, 206, 257
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 2 cut(s) 206, 257
BsaJI CCNNGG 2 cut(s) 185, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 278
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 185, 204
BseGI GGATG 2 cut(s) 169, 268
BseLI CCNNNNNNNGG 2 cut(s) 180, 278
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 3 cut(s) 9, 184, 282
BsiSI CCGG 2 cut(s) 206, 257
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 180, 278
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 3 cut(s) 9, 184, 282
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 2 cut(s) 226, 247
BspANI GGCC 3 cut(s) 9, 184, 282
BssECI CCNNGG 2 cut(s) 185, 204
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 169, 268
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 3 cut(s) 184, 204, 255
BstV1I GCAGC 1 cut(s) 231
BsuRI GGCC 3 cut(s) 9, 184, 282
BtsCI GGATG 2 cut(s) 169, 268
BtsI GCAGTG 2 cut(s) 41, 238
BtsIMutI CAGTG 2 cut(s) 41, 238
Cfr13I GGNCC 2 cut(s) 163, 281
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 49
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 184
FaiI YATR 3 cut(s) 140, 251, 287
FaqI GGGAC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 2 cut(s) 156, 255
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 3 cut(s) 9, 184, 282
HapII CCGG 2 cut(s) 206, 257
HgaI GACGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 2 cut(s) 206, 257
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 83, 124
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 6 cut(s) 45, 171, 198, 219, 264, 270
Lsp1109I GCAGC 1 cut(s) 231
MaeI CTAG 1 cut(s) 81
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MnlI CCTC 5 cut(s) 12, 21, 94, 148, 233
MspI CCGG 2 cut(s) 206, 257
MspR9I CCNGG 3 cut(s) 186, 206, 257
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 225
NciI CCSGG 2 cut(s) 206, 257
NdeII GATC 1 cut(s) 273
PkrI GCNGC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspPI GGNCC 2 cut(s) 163, 281
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SalI GTCGAC 1 cut(s) 40
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 2 cut(s) 163, 281
ScrFI CCNGG 3 cut(s) 186, 206, 257
SetI ASST 4 cut(s) 82, 138, 202, 292
SinI GGWCC 1 cut(s) 163
SsiI CCGC 2 cut(s) 226, 247
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 184, 204, 255
TaqI TCGA 1 cut(s) 41
TatI WGTACW 1 cut(s) 48
TscAI CASTG 2 cut(s) 41, 245
TseI GCWGC 1 cut(s) 219
TspRI CASTG 2 cut(s) 41, 245
VpaK11BI GGWCC 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.