Prupe.1G471500_v2.0.a1

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011292
Physical Location & Seq
Reverse (-)
39245027 .. 39246897
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G471500.1

Sequence Viewer

Length: 1347 bp
ATGGCCGGGATCATCACAATCATTTGCAAACGCACCGTAGTTAGCACAAAGCCAGTCCAAGCAGGAAAAAGCTACCCCTTATCTGTCCTTGACCGCCATATGGAACACAACCATCTTAGGATGGTCTTGTATTACCCATCAATGGGTGCCCCAACAGAGCCTGGTGAGATCACAGGGAGGCTCAGAGAGTCCCTCGCCGTCATGCTTACGCATTTCCCGATCGTTACAGGCCGGTTGCAGAAGAATGACAATGATCAGTGGATGATCAAGTGCAATGATGCTGGTGTGAGAATGCTGGAAGCTAAGGCCAAAGGGAGTTTGGAGGAGTGGCTAAGGAATGTGGATAGGGACAAGGAGCTTATGCTTGTTTATTGGGAGGAAATGTACCATAAGCCTTACTTTTGGTCAACATTTTATGTTCAGATTACTGAATTTGAAGATGGTGGATTAGCAATTGGGCTAAGTTGCACTCATCTCCTTGCAGATCCTACTTGTGCCACCATGTTCATCAAGGCTTGGGCCGACACAACCTTTCCGGGCAAAATGATGAGTCTTCCGTTTTTCTATCCGTTGCCGCGGCGGAGTCCCGGCAACACAAGGCCCAACCACAACACCTATAATTCATTGATCACCCACTACAAAGCCTCCATCAACGAGTCCATTGATCTTGTAGACAAAAAGCACACAACTGTTAGTTTCGGTTTTTCGGACGACATGGTTCGGGCCTGCATGGAAATGGCCCAGCCCGATGGTGCAAATGACAAATCAAGCCCATCACCGTTTGAGGCTCTGGCTGGGCTATTTTGGGTTTGTATTAGCAAGGTCAAGGGAGTGAGAAATGGGCTTATTGACATGTCCATATCTATCGATGTGAGACAGGTTTTGGGTTTGGATAAAGGCTTCTTTGGAAATAGCATGGTTTATAATAAGGTCCATCTAGAGAGTTTCCAAGAAAATAGTCTATCACAAGCTGCAACTTCTATAGGTGAAGTTGTAGCAAAAATGGACAATGAGGGAATCATGGATTTGATCGAATGGCTTCAATGCAACGATGACCAATCTCCTTCGTTGATGAACGGCTGCGATCTCATTTGTGCTAGCTTAGAAGCTGTGGACCCGTTTTCAGCAATTTTTGAAGATGGGATCGCACCGATTCATGTTTCGTGTTATATCGAACCGGTGTTAGGATTAGGGAAAGTCTTGATCCTTCCAGCGAAACCCAAAGATGGTCAACTAAGTAGGGCAGTAATGGTTACACTTCCACGTGATGAGGTAACCAAGCTATGTGAAGACGATCTTATTTTACAACTCTCTCCAACCATCTTGATGGATTTGAACAAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

449

Amino Acids

50.04

Weight (kDa)

5.36

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 672
AccII CGCG 1 cut(s) 577
AciI CCGC 4 cut(s) 94, 575, 577, 580
AclWI GGATC 4 cut(s) 17, 479, 1151, 1198
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 431
AcvI CACGTG 1 cut(s) 1265
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 5 cut(s) 100, 142, 143, 1184, 1226
AflIII ACRYGT 1 cut(s) 852
AgeI ACCGGT 1 cut(s) 1177
AgsI TTSAA 4 cut(s) 437, 1043, 1136, 1336
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 7 cut(s) 72, 302, 358, 971, 1101, 1109, 1282
AluI AGCT 7 cut(s) 72, 302, 358, 971, 1101, 1109, 1282
Alw26I GTCTC 1 cut(s) 868
AlwI GGATC 4 cut(s) 17, 479, 1151, 1198
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 7 cut(s) 3, 229, 306, 519, 599, 723, 738
ApeKI GCWGC 2 cut(s) 971, 1080
ApoI RAATTY 1 cut(s) 431
AsiGI ACCGGT 1 cut(s) 1177
Asp700I GAANNNNTTC 1 cut(s) 1038
AspS9I GGNCC 6 cut(s) 519, 600, 723, 739, 931, 1114
AsuC2I CCSGG 3 cut(s) 7, 537, 588
AsuHPI GGTGA 4 cut(s) 176, 622, 768, 998
AsuNHI GCTAGC 1 cut(s) 1097
AvaII GGWCC 2 cut(s) 931, 1114
BaeGI GKGCMC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 1265
BbsI GAAGAC 2 cut(s) 545, 1296
BbvI GCAGC 2 cut(s) 958, 1067
BceAI ACGGC 2 cut(s) 182, 1093
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 3 cut(s) 253, 264, 627
BcnI CCSGG 3 cut(s) 7, 537, 588
BcoDI GTCTC 1 cut(s) 868
BfaI CTAG 3 cut(s) 938, 1098, 1345
BfmI CTRYAG 1 cut(s) 981
BisI GCNGC 4 cut(s) 575, 578, 972, 1081
BlsI GCNGC 4 cut(s) 576, 579, 973, 1082
Bme1390I CCNGG 4 cut(s) 7, 162, 537, 588
Bme18I GGWCC 2 cut(s) 931, 1114
BmgT120I GGNCC 6 cut(s) 519, 600, 723, 739, 931, 1114
BmiI GGNNCC 2 cut(s) 148, 1116
BmrFI CCNGG 4 cut(s) 7, 162, 537, 588
BmsI GCATC 1 cut(s) 268
BmtI GCTAGC 1 cut(s) 1101
BpiI GAAGAC 2 cut(s) 545, 1296
BplI GAGNNNNNCTC 2 cut(s) 177, 209
Bpu10I CCTNAGC 2 cut(s) 303, 332
BpuMI CCSGG 3 cut(s) 7, 537, 588
Bsa29I ATCGAT 1 cut(s) 867
BsaAI YACGTR 1 cut(s) 1265
BsaJI CCNNGG 1 cut(s) 575
BsaWI WCCGGW 1 cut(s) 1177
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 629, 659
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 142, 143, 1184, 1226
Bse118I RCCGGY 2 cut(s) 231, 1177
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 1 cut(s) 575
BseGI GGATG 2 cut(s) 126, 267
BseLI CCNNNNNNNGG 5 cut(s) 100, 142, 143, 1184, 1226
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 2 cut(s) 958, 1067
BseYI CCCAGC 2 cut(s) 741, 794
Bsh1236I CGCG 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 7 cut(s) 5, 231, 308, 521, 601, 725, 740
BshNI GGYRCC 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 1177
BshVI ATCGAT 1 cut(s) 867
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 5 cut(s) 6, 232, 536, 588, 1178
BslFI GGGAC 3 cut(s) 175, 362, 570
BslI CCNNNNNNNGG 5 cut(s) 100, 142, 143, 1184, 1226
BsmAI GTCTC 1 cut(s) 868
BsmFI GGGAC 3 cut(s) 175, 362, 570
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 7 cut(s) 5, 231, 308, 521, 601, 725, 740
Bsp1286I GDGCHC 1 cut(s) 151
BspACI CCGC 4 cut(s) 94, 575, 577, 580
BspANI GGCC 7 cut(s) 5, 231, 308, 521, 601, 725, 740
BspCNI CTCAG 1 cut(s) 195
BspDI ATCGAT 1 cut(s) 867
BspFNI CGCG 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 148, 1116
BspOI GCTAGC 1 cut(s) 1101
BspPI GGATC 4 cut(s) 17, 479, 1151, 1198
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 280
BsrFI RCCGGY 2 cut(s) 231, 1177
BsrI ACTGG 1 cut(s) 53
BssAI RCCGGY 2 cut(s) 231, 1177
BssECI CCNNGG 1 cut(s) 575
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 37, 691, 780
BstBAI YACGTR 1 cut(s) 1265
BstC8I GCNNGC 2 cut(s) 727, 1099
BstDEI CTNAG 7 cut(s) 116, 182, 303, 332, 461, 1102, 1235
BstDSI CCRYGG 1 cut(s) 575
BstEII GGTNACC 1 cut(s) 1273
BstF5I GGATG 2 cut(s) 126, 267
BstFNI CGCG 1 cut(s) 577
BstMAI GTCTC 1 cut(s) 868
BstMCI CGRYCG 1 cut(s) 222
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 856
BstPI GGTNACC 1 cut(s) 1273
BstSCI CCNGG 4 cut(s) 5, 160, 535, 586
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 151
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 2 cut(s) 958, 1067
BstV2I GAAGAC 2 cut(s) 545, 1296
BstX2I RGATCY 1 cut(s) 484
BstXI CCANNNNNNTGG 2 cut(s) 749, 1327
BstYI RGATCY 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 867
BsuRI GGCC 7 cut(s) 5, 231, 308, 521, 601, 725, 740
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 1 cut(s) 575
BtsCI GGATG 2 cut(s) 126, 267
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 727, 1099
CaiI CAGNNNCTG 1 cut(s) 161
Cfr10I RCCGGY 2 cut(s) 231, 1177
Cfr13I GGNCC 6 cut(s) 519, 600, 723, 739, 931, 1114
Cfr42I CCGCGG 1 cut(s) 578
ClaI ATCGAT 1 cut(s) 867
Csp6I GTAC 1 cut(s) 385
CspAI ACCGGT 1 cut(s) 1177
CviAII CATG 8 cut(s) 202, 502, 715, 730, 853, 916, 1021, 1157
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 7 cut(s) 116, 182, 303, 332, 461, 1102, 1235
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 931, 1114
Eco72I CACGTG 1 cut(s) 1265
Eco91I GGTNACC 1 cut(s) 1273
EcoO65I GGTNACC 1 cut(s) 1273
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 8 cut(s) 205, 505, 718, 733, 856, 919, 1024, 1160
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 1281, 1313
FaqI GGGAC 3 cut(s) 175, 362, 570
FatI CATG 8 cut(s) 201, 501, 714, 729, 852, 915, 1020, 1156
FauNDI CATATG 1 cut(s) 99
FbaI TGATCA 3 cut(s) 253, 264, 627
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 4 cut(s) 575, 578, 972, 1081
FokI GGATG 2 cut(s) 133, 274
Fsp4HI GCNGC 4 cut(s) 575, 578, 972, 1081
FspBI CTAG 3 cut(s) 938, 1098, 1345
GluI GCNGC 4 cut(s) 575, 578, 972, 1081
GsaI CCCAGC 2 cut(s) 745, 798
HaeIII GGCC 7 cut(s) 5, 231, 308, 521, 601, 725, 740
HapII CCGG 5 cut(s) 6, 232, 536, 588, 1178
Hin1II CATG 8 cut(s) 205, 505, 718, 733, 856, 919, 1024, 1160
HincII GTYRAC 2 cut(s) 408, 1232
HindII GTYRAC 2 cut(s) 408, 1232
HinfI GANTC 6 cut(s) 188, 550, 583, 656, 1017, 1153
HpaII CCGG 5 cut(s) 6, 232, 536, 588, 1178
HphI GGTGA 4 cut(s) 176, 622, 768, 998
Hpy166II GTNNAC 4 cut(s) 408, 673, 1114, 1232
Hpy188I TCNGA 3 cut(s) 185, 423, 709
Hpy188III TCNNGA 4 cut(s) 217, 938, 1201, 1324
Hpy8I GTNNAC 4 cut(s) 408, 673, 1114, 1232
HpyAV CCTTC 2 cut(s) 1074, 1217
HpyCH4III ACNGT 3 cut(s) 37, 691, 780
HpyCH4IV ACGT 1 cut(s) 1264
HpyCH4V TGCA 9 cut(s) 27, 238, 273, 468, 482, 729, 755, 974, 1047
HpyF3I CTNAG 7 cut(s) 116, 182, 303, 332, 461, 1102, 1235
HpySE526I ACGT 1 cut(s) 1264
Hsp92II CATG 8 cut(s) 205, 505, 718, 733, 856, 919, 1024, 1160
Ksp22I TGATCA 3 cut(s) 253, 264, 627
KspI CCGCGG 1 cut(s) 578
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 958, 1067
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 938, 1098, 1345
MaeII ACGT 1 cut(s) 1264
MaeIII GTNAC 3 cut(s) 223, 1252, 1273
MboII GAAGA 5 cut(s) 253, 449, 545, 1148, 1301
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 4 cut(s) 431, 453, 619, 1128
MlyI GAGTC 4 cut(s) 197, 559, 592, 665
MmeI TCCRAC 1 cut(s) 1340
MnlI CCTC 8 cut(s) 171, 203, 316, 370, 655, 778, 1006, 1264
MroXI GAANNNNTTC 1 cut(s) 1038
MslI CAYNNNNRTG 2 cut(s) 734, 1325
MspA1I CMGCKG 1 cut(s) 577
MspI CCGG 5 cut(s) 6, 232, 536, 588, 1178
MspR9I CCNGG 4 cut(s) 7, 162, 537, 588
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 577
NciI CCSGG 3 cut(s) 7, 537, 588
NdeI CATATG 1 cut(s) 99
NheI GCTAGC 1 cut(s) 1097
NlaIII CATG 8 cut(s) 205, 505, 718, 733, 856, 919, 1024, 1160
NlaIV GGNNCC 2 cut(s) 148, 1116
NspI RCATGY 1 cut(s) 856
PciI ACATGT 1 cut(s) 852
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PctI GAATGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 2 cut(s) 1017, 1153
PinAI ACCGGT 1 cut(s) 1177
PkrI GCNGC 4 cut(s) 576, 579, 973, 1082
Ple19I CGATCG 1 cut(s) 222
PleI GAGTC 4 cut(s) 196, 558, 591, 664
PmaCI CACGTG 1 cut(s) 1265
PmlI CACGTG 1 cut(s) 1265
PpsI GAGTC 4 cut(s) 196, 558, 591, 664
Ppu21I YACGTR 1 cut(s) 1265
PscI ACATGT 1 cut(s) 852
PsiI TTATAA 1 cut(s) 924
Psp6I CCWGG 1 cut(s) 160
PspCI CACGTG 1 cut(s) 1265
PspEI GGTNACC 1 cut(s) 1273
PspFI CCCAGC 2 cut(s) 741, 794
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 148, 1116
PspPI GGNCC 6 cut(s) 519, 600, 723, 739, 931, 1114
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 484
PvuI CGATCG 1 cut(s) 222
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 2 cut(s) 734, 1325
SacII CCGCGG 1 cut(s) 578
SatI GCNGC 4 cut(s) 575, 578, 972, 1081
Sau96I GGNCC 6 cut(s) 519, 600, 723, 739, 931, 1114
SchI GAGTC 4 cut(s) 197, 559, 592, 665
ScrFI CCNGG 4 cut(s) 7, 162, 537, 588
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 981
Sfr303I CCGCGG 1 cut(s) 578
SgrBI CCGCGG 1 cut(s) 578
SinI GGWCC 2 cut(s) 931, 1114
SmiMI CAYNNNNRTG 2 cut(s) 734, 1325
Sse9I AATT 4 cut(s) 431, 453, 619, 1128
SsiI CCGC 4 cut(s) 94, 575, 577, 580
SspMI CTAG 3 cut(s) 938, 1098, 1345
StyD4I CCNGG 4 cut(s) 5, 160, 535, 586
TaaI ACNGT 3 cut(s) 37, 691, 780
TaiI ACGT 1 cut(s) 1267
TaqI TCGA 3 cut(s) 867, 1032, 1173
TasI AATT 4 cut(s) 431, 453, 619, 1128
TauI GCSGC 2 cut(s) 577, 580
TfiI GAWTC 2 cut(s) 1017, 1153
TscAI CASTG 1 cut(s) 263
TseI GCWGC 2 cut(s) 971, 1080
TspDTI ATGAA 4 cut(s) 496, 612, 1088, 1145
TspGWI ACGGA 2 cut(s) 546, 558
TspRI CASTG 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 931, 1114
XapI RAATTY 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 3 cut(s) 938, 1098, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.