Rh6BG402800

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011292
Physical Location & Seq
Forward (+)
62956831 .. 62957559
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG402800.1

Sequence Viewer

Length: 606 bp
ATGGCCAAGGTCAGAATCATTTGCACACGAACAGTTGTGAGTACGAGGCCAGTCCAAGTCGGAAAATGCCACCCCTTATCGGTTCTTGACCGGATAATGGAGAAGAAACACCTAAGAATGGTGTTGTATTACCCATCAATGGGTGTGACAGAGCCCAGTGAAATCACCAGGAGGCGTAGAGAGTCTATTTCGGGAGCGCTTATAAGTTTTCCGATAATGACAGGCCGATTGGAGAGGAATGAGAGGGGGCAGTGGTCGGCGAAGTACAATGACGCTGGAGTGAGAATGGTGGAAGCTAGGGCTAAAGGGACTTTGGAGGAGTGGCTTAGAAATGTGGATAGGGAGAAGGAGCTTATGCTTGTCTATTGGGAGGAAATGGACCACCATCCCTTATTTTGCTTACTGAATTTGAGGATGCATGGTGGTTTAGCAATTGGGCTAAGCTGCACTCATCTCCTGGCAGATCCCACTTCGGCAACCGTGTTCCTTAAGGCCTGGGCTGACACAAGCTTCCCCGGACAAATGTTGCAGCCTCCGCTTTTCCACCCACTGCCACCCCGTAGACCCGGAAACAGAACACCCGATTCAGGCCCTATACCTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

201

Amino Acids

22.88

Weight (kDa)

9.64

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 179 3.2e-22 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccI GTMKAC 1 cut(s) 562
AciI CCGC 1 cut(s) 536
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 2 cut(s) 43, 266
AfeI AGCGCT 1 cut(s) 198
AfiI CCNNNNNNNGG 6 cut(s) 79, 97, 118, 139, 140, 587
AflII CTTAAG 1 cut(s) 488
AjnI CCWGG 3 cut(s) 167, 456, 494
AluBI AGCT 4 cut(s) 296, 352, 444, 510
AluI AGCT 4 cut(s) 296, 352, 444, 510
AlwI GGATC 1 cut(s) 458
Aor51HI AGCGCT 1 cut(s) 198
AoxI GGCC 5 cut(s) 3, 47, 223, 492, 589
ApeKI GCWGC 2 cut(s) 444, 529
ApoI RAATTY 1 cut(s) 406
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 379, 590
AsuC2I CCSGG 2 cut(s) 516, 567
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 431, 541
BccI CCATC 2 cut(s) 142, 393
BciT130I CCWGG 3 cut(s) 169, 458, 496
BcnI CCSGG 2 cut(s) 516, 567
BfaI CTAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 488
BisI GCNGC 2 cut(s) 445, 530
BlpI GCTNAGC 1 cut(s) 440
BlsI GCNGC 2 cut(s) 446, 531
Bme1390I CCNGG 5 cut(s) 169, 458, 496, 516, 567
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 379, 590
BmrFI CCNGG 5 cut(s) 169, 458, 496, 516, 567
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 516, 567
BsaJI CCNNGG 3 cut(s) 6, 495, 514
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 97, 118, 139, 140, 587
Bse1I ACTGG 2 cut(s) 50, 156
BseBI CCWGG 3 cut(s) 169, 458, 496
BseDI CCNNGG 3 cut(s) 6, 495, 514
BseGI GGATG 2 cut(s) 385, 420
BseLI CCNNNNNNNGG 6 cut(s) 79, 97, 118, 139, 140, 587
BseNI ACTGG 2 cut(s) 50, 156
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 431, 541
BsgI GTGCAG 1 cut(s) 430
BshFI GGCC 5 cut(s) 5, 49, 225, 494, 591
BsiSI CCGG 3 cut(s) 91, 516, 567
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 6 cut(s) 79, 97, 118, 139, 140, 587
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 5 cut(s) 5, 49, 225, 494, 591
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 463
Bsp1720I GCTNAGC 1 cut(s) 440
BspACI CCGC 1 cut(s) 536
BspANI GGCC 5 cut(s) 5, 49, 225, 494, 591
BspPI GGATC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 488
BsrI ACTGG 2 cut(s) 50, 156
BssECI CCNNGG 3 cut(s) 6, 495, 514
BssMI GATC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 3 cut(s) 169, 458, 496
Bst4CI ACNGT 2 cut(s) 34, 481
BstAFI CTTAAG 1 cut(s) 488
BstDEI CTNAG 3 cut(s) 113, 326, 440
BstF5I GGATG 2 cut(s) 385, 420
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 466
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 3 cut(s) 169, 458, 496
BstSCI CCNGG 5 cut(s) 167, 456, 494, 514, 565
BstV1I GCAGC 2 cut(s) 431, 541
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 5 cut(s) 5, 49, 225, 494, 591
BtsCI GGATG 2 cut(s) 385, 420
BtsI GCAGTG 2 cut(s) 257, 548
BtsIMutI CAGTG 3 cut(s) 163, 257, 548
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 379, 590
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 42, 265
CviAII CATG 1 cut(s) 419
CviQI GTAC 2 cut(s) 42, 265
DdeI CTNAG 3 cut(s) 113, 326, 440
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 379
Eco47III AGCGCT 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 3 cut(s) 167, 456, 494
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 422
FaiI YATR 4 cut(s) 203, 356, 420, 596
FaqI GGGAC 1 cut(s) 322
FatI CATG 1 cut(s) 418
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 2 cut(s) 445, 530
FokI GGATG 2 cut(s) 372, 427
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 445, 530
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 445, 530
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 5 cut(s) 5, 49, 225, 494, 591
HapII CCGG 3 cut(s) 91, 516, 567
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 3 cut(s) 15, 182, 584
HpaII CCGG 3 cut(s) 91, 516, 567
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 3 cut(s) 14, 62, 213
Hpy188III TCNNGA 2 cut(s) 86, 192
Hpy8I GTNNAC 1 cut(s) 563
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 34, 481
HpyCH4V TGCA 4 cut(s) 24, 418, 447, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 3 cut(s) 113, 326, 440
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 194, 349
Lsp1109I GCAGC 2 cut(s) 431, 541
LweI GCATC 1 cut(s) 405
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 406, 432
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 8 cut(s) 39, 165, 228, 237, 310, 364, 405, 543
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 420
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 3 cut(s) 91, 516, 567
MspR9I CCNGG 5 cut(s) 169, 458, 496, 516, 567
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 3 cut(s) 169, 458, 496
MwoI GCNNNNNNNGC 1 cut(s) 535
NciI CCSGG 2 cut(s) 516, 567
NdeII GATC 1 cut(s) 463
NlaIII CATG 1 cut(s) 422
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 420
PceI AGGCCT 1 cut(s) 494
PfeI GAWTC 2 cut(s) 15, 584
PkrI GCNGC 2 cut(s) 446, 531
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 167, 456, 494
PspGI CCWGG 3 cut(s) 167, 456, 494
PspPI GGNCC 2 cut(s) 379, 590
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 2 cut(s) 43, 266
RsaNI GTAC 2 cut(s) 42, 265
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 445, 530
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 2 cut(s) 379, 590
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 5 cut(s) 169, 458, 496, 516, 567
SduI GDGCHC 1 cut(s) 156
SetI ASST 7 cut(s) 12, 114, 298, 354, 446, 512, 601
SfaNI GCATC 1 cut(s) 405
SinI GGWCC 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 2 cut(s) 406, 432
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 1 cut(s) 536
SspMI CTAG 1 cut(s) 297
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 5 cut(s) 167, 456, 494, 514, 565
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 34, 481
TasI AATT 2 cut(s) 406, 432
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 2 cut(s) 15, 584
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 3 cut(s) 163, 257, 555
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 444, 529
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 3 cut(s) 163, 257, 555
Vha464I CTTAAG 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 562
XspI CTAG 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.