Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

15493989 .. 15496381

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTCACCGATCAATCACAGCAACCTCCGCCGCAGCGTCACTTCTCTGAAACACCTTCGCTTGTCACCGCCAGTTTCCTCAACCTCCCTACCACCCTTACCACTGCGGATTCCGATCTCGCTCCTCCGCACCGCAACGGAGACAATTCCGTTGCTGATACAAACCCACGCTGGCTCTCCTTTCATTCGGAGATGCAAAATACTGGAGAAGTACGTTCTGAAGTTATCGACGGAGTCAACGCCGATGGTGAAACGATACTCGGCGTTGTAGGAGGTGAAGATTGGCGGAGTGCTAGCTATAAGGCGGCGATTTTAAGACATCCGATGTACGAGCAGCTTCTTGCGGCTCACGTGGCTTGCCTTAGGGTTGCGACTCCCGTTGACCAGATTCCGAGGATCGATGCTCAGCTCAGTCAGTTGCATACCGTCGCCGCGAAATACTCCACTCTTGGTGTGGTTGTTGACAACAAGGAACTTGATCATTTCATGTCACATTATGTTGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGTGTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATTGAACAATCACTGCAATCCCTAACTGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGTCGGATGATGAAGATGATAATCAAGTAGAGAGCGAGGTGAACATGTTTGATGGAAGTTTGGACGGTTCAGATTGCTTGATGGGGTTTGGTCCTCTTGTTCCAACCGAGAGAGAGAGATCTTTGATGGAACGTGTGAAGAAAGAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAGATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCAGGAGATACGACTTCTGTACTCAAAGAATGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGGAAGATAAGGCAAAACTGGTTCAAGAAACCGGTTTGCAGTTGAAACAGATCAACAATTGGTTCATCAACCAGAGGAAAAGAAACTGGAACAGCAACTCTTCCACGTCATCTACTCTCACCAAGAACAAACGTAAACGGACCGGGAAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

383

Amino Acids

43.28

Weight (kDa)

6.03

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	118 - 159	2.9e-18	KNOX1 domain
KNOX2	PF03791	171 - 221	1.3e-18	KNOX2 domain
ELK	PF03789	281 - 302	2.2e-06	ELK domain
Homeobox_KN	PF05920	321 - 360	1.1e-18	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1144
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccII	CGCG	1 cut(s)	488
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	983
AcuI	CTGAAG	2 cut(s)	294, 866
AcvI	CACGTG	1 cut(s)	406
AfaI	GTAC	3 cut(s)	267, 383, 951
AfiI	CCNNNNNNNGG	2 cut(s)	610, 997
AflIII	ACRYGT	2 cut(s)	741, 829
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	4 cut(s)	641, 871, 1022, 1042
AjiI	CACGTC	1 cut(s)	1104
AjnI	CCWGG	1 cut(s)	931
AleI	CACNNNNGTG	1 cut(s)	597
AluBI	AGCT	5 cut(s)	15, 351, 391, 463, 856
AluI	AGCT	5 cut(s)	15, 351, 391, 463, 856
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	983
ApeKI	GCWGC	2 cut(s)	88, 388
AsiGI	ACCGGT	1 cut(s)	1028
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	788, 1137
AsuC2I	CCSGG	1 cut(s)	1141
AsuHPI	GGTGA	6 cut(s)	52, 112, 314, 341, 748, 1108
AsuNHI	GCTAGC	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	788, 1137
AxyI	CCTNAGG	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	985
BbrPI	CACGTG	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	100, 400
BccI	CCATC	4 cut(s)	293, 743, 772, 817
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	1 cut(s)	933
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	1141
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	623
BglII	AGATCT	1 cut(s)	815
BisI	GCNGC	6 cut(s)	86, 89, 360, 389, 399, 486
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	6 cut(s)	87, 90, 361, 390, 400, 487
Bme1390I	CCNGG	2 cut(s)	933, 1141
Bme18I	GGWCC	2 cut(s)	788, 1137
BmgBI	CACGTC	1 cut(s)	1104
BmgT120I	GGNCC	2 cut(s)	788, 1137
BmrFI	CCNGG	2 cut(s)	933, 1141
BmsI	GCATC	2 cut(s)	237, 445
BmtI	GCTAGC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	2 cut(s)	279, 684
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	1141
Bsa29I	ATCGAT	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	406
BsaBI	GATNNNNATC	2 cut(s)	168, 717
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	1028
Bsc4I	CCNNNNNNNGG	2 cut(s)	610, 997
Bse118I	RCCGGY	1 cut(s)	1028
Bse1I	ACTGG	5 cut(s)	126, 262, 667, 1020, 1088
Bse21I	CCTNAGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	2 cut(s)	168, 717
BseBI	CCWGG	1 cut(s)	933
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	2 cut(s)	373, 709
BseJI	GATNNNNATC	2 cut(s)	168, 717
BseLI	CCNNNNNNNGG	2 cut(s)	610, 997
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	3 cut(s)	473, 478, 987
BseNI	ACTGG	5 cut(s)	126, 262, 667, 1020, 1088
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	100, 400
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	1 cut(s)	985
BshTI	ACCGGT	1 cut(s)	1028
BshVI	ATCGAT	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	1029, 1140
BslI	CCNNNNNNNGG	2 cut(s)	610, 997
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	985
Bsp143I	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
Bsp1720I	GCTNAGC	1 cut(s)	459
BspANI	GGCC	1 cut(s)	985
BspCNI	CTCAG	3 cut(s)	472, 477, 988
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	488
BspOI	GCTAGC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	1028
BsrI	ACTGG	5 cut(s)	126, 262, 667, 1020, 1088
BssAI	RCCGGY	1 cut(s)	1028
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	2 cut(s)	481, 764
Bst6I	CTCTTC	3 cut(s)	891, 905, 1102
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	227, 349, 412
BstDEI	CTNAG	4 cut(s)	416, 459, 464, 996
BstF5I	GGATG	2 cut(s)	373, 709
BstFNI	CGCG	1 cut(s)	488
BstKTI	GATC	6 cut(s)	67, 172, 453, 535, 818, 1050
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 407, 614, 623
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	931, 1139
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	100, 400
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	453
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	985
BsuTUI	ATCGAT	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	1104
BtsCI	GGATG	2 cut(s)	373, 709
BtsI	GCAGTG	2 cut(s)	156, 647
BtsIMutI	CAGTG	2 cut(s)	156, 647
Cac8I	GCNNGC	3 cut(s)	227, 349, 412
Cfr10I	RCCGGY	1 cut(s)	1028
Cfr13I	GGNCC	2 cut(s)	788, 1137
ClaI	ATCGAT	1 cut(s)	453
CpoI	CGGWCCG	1 cut(s)	1137
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	266, 382, 950
CspAI	ACCGGT	1 cut(s)	1028
CspI	CGGWCCG	1 cut(s)	1137
CviAII	CATG	4 cut(s)	541, 605, 742, 851
CviQI	GTAC	3 cut(s)	266, 382, 950
DdeI	CTNAG	4 cut(s)	416, 459, 464, 996
DpnI	GATC	6 cut(s)	66, 171, 452, 534, 817, 1049
DpnII	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
DraI	TTTAAA	1 cut(s)	574
DrdI	GACNNNNNNGTC	1 cut(s)	1144
DseDI	GACNNNNNNGTC	1 cut(s)	1144
EaeI	YGGCCR	1 cut(s)	983
Eam1104I	CTCTTC	3 cut(s)	891, 905, 1102
EarI	CTCTTC	3 cut(s)	891, 905, 1102
EciI	GGCGGA	2 cut(s)	72, 355
Eco47I	GGWCC	2 cut(s)	788, 1137
Eco57I	CTGAAG	2 cut(s)	294, 866
Eco72I	CACGTG	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	931
FaeI	CATG	4 cut(s)	544, 608, 745, 854
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	4 cut(s)	540, 604, 741, 850
FauI	CCCGC	1 cut(s)	913
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	6 cut(s)	86, 89, 360, 389, 399, 486
FokI	GGATG	2 cut(s)	360, 716
Fsp4HI	GCNGC	6 cut(s)	86, 89, 360, 389, 399, 486
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	6 cut(s)	86, 89, 360, 389, 399, 486
GsuI	CTGGAG	2 cut(s)	279, 684
HaeIII	GGCC	1 cut(s)	985
HapII	CCGG	2 cut(s)	1029, 1140
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	544, 608, 745, 854
HincII	GTYRAC	3 cut(s)	292, 436, 517
HindII	GTYRAC	3 cut(s)	292, 436, 517
HinfI	GANTC	4 cut(s)	164, 288, 427, 442
HpaII	CCGG	2 cut(s)	1029, 1140
HphI	GGTGA	6 cut(s)	52, 112, 314, 341, 748, 1108
Hpy166II	GTNNAC	6 cut(s)	292, 436, 517, 739, 886, 1133
Hpy188I	TCNGA	9 cut(s)	53, 103, 169, 244, 274, 378, 447, 703, 769
Hpy188III	TCNNGA	1 cut(s)	1022
Hpy8I	GTNNAC	6 cut(s)	292, 436, 517, 739, 886, 1133
Hpy99I	CGWCG	2 cut(s)	287, 485
HpyAV	CCTTC	4 cut(s)	35, 53, 120, 909
HpyCH4III	ACNGT	2 cut(s)	481, 764
HpyCH4IV	ACGT	6 cut(s)	268, 405, 594, 829, 1103, 1129
HpyCH4V	TGCA	5 cut(s)	250, 475, 608, 652, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 407, 614, 623
HpyF3I	CTNAG	4 cut(s)	416, 459, 464, 996
HpySE526I	ACGT	6 cut(s)	268, 405, 594, 829, 1103, 1129
Hsp92II	CATG	4 cut(s)	544, 608, 745, 854
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
LmnI	GCTCC	2 cut(s)	20, 181
Lsp1109I	GCAGC	2 cut(s)	100, 400
LweI	GCATC	2 cut(s)	237, 445
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	6 cut(s)	268, 405, 594, 829, 1103, 1129
MaeIII	GTNAC	3 cut(s)	92, 118, 543
MalI	GATC	6 cut(s)	66, 171, 452, 534, 817, 1049
MboI	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
MboII	GAAGA	9 cut(s)	50, 344, 722, 847, 889, 908, 922, 1013, 1089
MfeI	CAATTG	1 cut(s)	1054
MflI	RGATCY	1 cut(s)	815
MlsI	TGGCCA	1 cut(s)	985
MluCI	AATT	2 cut(s)	199, 1054
MluNI	TGGCCA	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	297, 421
MmeI	TCCRAC	4 cut(s)	76, 610, 681, 824
Mox20I	TGGCCA	1 cut(s)	985
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	985
MseI	TTAA	4 cut(s)	9, 368, 573, 858
MslI	CAYNNNNRTG	1 cut(s)	597
Msp20I	TGGCCA	1 cut(s)	985
MspI	CCGG	2 cut(s)	1029, 1140
MspR9I	CCNGG	2 cut(s)	933, 1141
MunI	CAATTG	1 cut(s)	1054
MvaI	CCWGG	1 cut(s)	933
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	4 cut(s)	82, 407, 614, 623
NciI	CCSGG	1 cut(s)	1141
NdeII	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	4 cut(s)	544, 608, 745, 854
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	3 cut(s)	92, 118, 543
NspI	RCATGY	1 cut(s)	745
OliI	CACNNNNGTG	1 cut(s)	597
PciI	ACATGT	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	164, 442
PflFI	GACNNNGTC	2 cut(s)	287, 697
PflMI	CCANNNNNTGG	1 cut(s)	610
PinAI	ACCGGT	1 cut(s)	1028
PkrI	GCNGC	6 cut(s)	87, 90, 361, 390, 400, 487
PleI	GAGTC	2 cut(s)	296, 421
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
PpsI	GAGTC	2 cut(s)	296, 421
Ppu21I	YACGTR	1 cut(s)	406
PscI	ACATGT	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	931
PspCI	CACGTG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	931
PspPI	GGNCC	2 cut(s)	788, 1137
PsuI	RGATCY	1 cut(s)	815
PsyI	GACNNNGTC	2 cut(s)	287, 697
RsaI	GTAC	3 cut(s)	267, 383, 951
RsaNI	GTAC	3 cut(s)	266, 382, 950
RseI	CAYNNNNRTG	1 cut(s)	597
Rsr2I	CGGWCCG	1 cut(s)	1137
RsrII	CGGWCCG	1 cut(s)	1137
SaqAI	TTAA	4 cut(s)	9, 368, 573, 858
SatI	GCNGC	6 cut(s)	86, 89, 360, 389, 399, 486
Sau3AI	GATC	6 cut(s)	64, 169, 450, 532, 815, 1047
Sau96I	GGNCC	2 cut(s)	788, 1137
SchI	GAGTC	2 cut(s)	297, 421
ScrFI	CCNGG	2 cut(s)	933, 1141
SfaNI	GCATC	2 cut(s)	237, 445
SinI	GGWCC	2 cut(s)	788, 1137
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	2 cut(s)	199, 1054
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	931, 1139
TaaI	ACNGT	2 cut(s)	481, 764
TaiI	ACGT	6 cut(s)	271, 408, 597, 832, 1106, 1132
TaqI	TCGA	3 cut(s)	282, 453, 977
TasI	AATT	2 cut(s)	199, 1054
TatI	WGTACW	1 cut(s)	949
TauI	GCSGC	4 cut(s)	88, 362, 401, 488
TfiI	GAWTC	2 cut(s)	164, 442
Tru1I	TTAA	4 cut(s)	9, 368, 573, 858
Tru9I	TTAA	4 cut(s)	9, 368, 573, 858
TscAI	CASTG	2 cut(s)	163, 654
TseFI	GTSAC	3 cut(s)	92, 118, 543
TseI	GCWGC	2 cut(s)	88, 388
Tsp45I	GTSAC	3 cut(s)	92, 118, 543
TspDTI	ATGAA	5 cut(s)	227, 529, 558, 723, 1051
TspGWI	ACGGA	4 cut(s)	193, 207, 300, 1150
TspRI	CASTG	2 cut(s)	163, 654
Tth111I	GACNNNGTC	2 cut(s)	287, 697
Van91I	CCANNNNNTGG	1 cut(s)	610
VpaK11BI	GGWCC	2 cut(s)	788, 1137
XceI	RCATGY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.