Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002376.1

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

11185 .. 12723

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002376.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgagagccaacggcgatttccaagttatggatgagaaagaacttgactcgttcatgacaaactatgttcttttgctttgttccttcaaagaacaactgcagcaacatgttcgagttcatgccatggaggcagtcatggcttgttgggagcttgagcaatctctacaaagcttaacaggtgtatcaacggctgagggcacaggggccacaatgtccgatgatgatgaacaattcgacagtgacattaactcgtatgacgcgagtctagatggacatgacaccatgggattcggtcctctcgtgccaactgaaagtgagagatctctaatggagcgcgtaaggcaagaattgaagcatgaattgaaacagggttacaaggaaaagattgttgacattcgtgaggaaattctgcgtaagagaagagcagggaaacttccaggtgacaccacttctgtgttgaaagcttggtggcaatcacattccaaatggccttacccaactgaggaagacaaagcgaggctagtgcaggaaacagggttgcaattgaagcagatcaataactggtttatcaatcaaagaaaaaggaactggcacagcaacctctccacaacttctgttttgaagagcaagcgcaagagtaatgcaggtgatggcaacactcaacaattcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

224

Amino Acids

25.8

Weight (kDa)

5.91

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccII	CGCG	2 cut(s)	260, 336
AcsI	RAATTY	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	28, 502
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	7 cut(s)	88, 352, 364, 460, 547, 622, 670
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	3 cut(s)	151, 171, 464
AluI	AGCT	3 cut(s)	151, 171, 464
AoxI	GGCC	2 cut(s)	204, 488
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	336, 633
AspS9I	GGNCC	2 cut(s)	204, 293
AsuHPI	GGTGA	2 cut(s)	452, 659
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	200
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	513
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	263, 644
BceAI	ACGGC	2 cut(s)	28, 204
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 505, 539
BciT130I	CCWGG	1 cut(s)	438
BfaI	CTAG	2 cut(s)	266, 521
BfmI	CTRYAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	635
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	320
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	204, 293
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	438
BoxI	GACNNNNGTC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	123, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 502
Bse1I	ACTGG	2 cut(s)	566, 593
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	123, 282
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	28, 502
BseMII	CTCAG	2 cut(s)	183, 492
BseNI	ACTGG	2 cut(s)	566, 593
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	545
Bsh1236I	CGCG	2 cut(s)	260, 336
BshFI	GGCC	2 cut(s)	206, 490
BslI	CCNNNNNNNGG	2 cut(s)	28, 502
BsnI	GGCC	2 cut(s)	206, 490
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	320, 552
Bsp19I	CCATGG	2 cut(s)	123, 282
BspANI	GGCC	2 cut(s)	206, 490
BspCNI	CTCAG	2 cut(s)	184, 493
BspFNI	CGCG	2 cut(s)	260, 336
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	635
BspQI	GCTCTTC	2 cut(s)	415, 617
BsrI	ACTGG	2 cut(s)	566, 593
BssECI	CCNNGG	2 cut(s)	123, 282
BssMI	GATC	2 cut(s)	320, 552
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	2 cut(s)	123, 282
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	415, 617
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	192, 501
BstDSI	CCRYGG	2 cut(s)	123, 282
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	2 cut(s)	260, 336
BstHHI	GCGC	2 cut(s)	336, 633
BstKTI	GATC	2 cut(s)	323, 555
BstMBI	GATC	2 cut(s)	320, 552
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 137, 340, 547
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	200
BstUI	CGCG	2 cut(s)	260, 336
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	206, 490
BtgI	CCRYGG	2 cut(s)	123, 282
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	635
Cac8I	GCNNGC	1 cut(s)	629
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	2 cut(s)	336, 633
Cfr13I	GGNCC	2 cut(s)	204, 293
CseI	GACGC	1 cut(s)	266
CviAII	CATG	8 cut(s)	55, 107, 119, 124, 136, 275, 283, 356
CviJI	RGCY	9 cut(s)	8, 140, 151, 171, 191, 206, 464, 490, 520
CviKI_1	RGCY	9 cut(s)	8, 140, 151, 171, 191, 206, 464, 490, 520
DdeI	CTNAG	2 cut(s)	192, 501
DpnI	GATC	2 cut(s)	322, 554
DpnII	GATC	2 cut(s)	320, 552
Eam1104I	CTCTTC	2 cut(s)	415, 617
EarI	CTCTTC	2 cut(s)	415, 617
Eco130I	CCWWGG	2 cut(s)	123, 282
Eco47I	GGWCC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	123, 282
ErhI	CCWWGG	2 cut(s)	123, 282
FaeI	CATG	8 cut(s)	58, 110, 122, 127, 139, 278, 286, 359
FatI	CATG	8 cut(s)	54, 106, 118, 123, 135, 274, 282, 355
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	2 cut(s)	266, 521
GlaI	GCGC	2 cut(s)	335, 632
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	206, 490
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	336, 633
Hin1II	CATG	8 cut(s)	58, 110, 122, 127, 139, 278, 286, 359
Hin6I	GCGC	2 cut(s)	334, 631
HinP1I	GCGC	2 cut(s)	334, 631
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	169, 462
HinfI	GANTC	3 cut(s)	47, 262, 288
HphI	GGTGA	2 cut(s)	452, 659
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	55, 266, 398
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	4 cut(s)	100, 526, 541, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 137, 340, 547
HpyF3I	CTNAG	2 cut(s)	192, 501
Hsp92II	CATG	8 cut(s)	58, 110, 122, 127, 139, 278, 286, 359
HspAI	GCGC	2 cut(s)	334, 631
Kzo9I	GATC	2 cut(s)	320, 552
LguI	GCTCTTC	2 cut(s)	415, 617
LmnI	GCTCC	2 cut(s)	148, 331
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	266, 521
MaeIII	GTNAC	3 cut(s)	239, 371, 440
MalI	GATC	2 cut(s)	322, 554
MboI	GATC	2 cut(s)	320, 552
MboII	GAAGA	3 cut(s)	432, 518, 634
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	6 cut(s)	230, 347, 359, 405, 542, 665
MlyI	GAGTC	2 cut(s)	41, 271
MnlI	CCTC	7 cut(s)	121, 187, 306, 394, 496, 510, 611
MseI	TTAA	2 cut(s)	173, 246
MslI	CAYNNNNRTG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	2 cut(s)	260, 336
MwoI	GCNNNNNNNGC	4 cut(s)	128, 137, 340, 547
NcoI	CCATGG	2 cut(s)	123, 282
NdeII	GATC	2 cut(s)	320, 552
NlaIII	CATG	8 cut(s)	58, 110, 122, 127, 139, 278, 286, 359
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	239, 440
NspI	RCATGY	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	452
PagI	TCATGA	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	635
PciI	ACATGT	1 cut(s)	106
PciSI	GCTCTTC	2 cut(s)	415, 617
PcsI	WCGNNNNNNNCGW	2 cut(s)	257, 297
PfeI	GAWTC	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	41, 270
PpsI	GAGTC	2 cut(s)	41, 270
PscI	ACATGT	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	204, 293
PstI	CTGCAG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	452
SapI	GCTCTTC	2 cut(s)	415, 617
SaqAI	TTAA	2 cut(s)	173, 246
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	320, 552
Sau96I	GGNCC	2 cut(s)	204, 293
SchI	GAGTC	2 cut(s)	41, 271
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	7 cut(s)	153, 173, 181, 442, 466, 603, 649
SfcI	CTRYAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	6 cut(s)	230, 347, 359, 405, 542, 665
SspMI	CTAG	2 cut(s)	266, 521
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	2 cut(s)	123, 282
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	2 cut(s)	112, 234
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	6 cut(s)	230, 347, 359, 405, 542, 665
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	173, 246
Tru9I	TTAA	2 cut(s)	173, 246
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	239, 440
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	239, 440
TspDTI	ATGAA	4 cut(s)	43, 107, 240, 372
TspRI	CASTG	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	405
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	2 cut(s)	266, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.