Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Reverse (-)

56062958 .. 56086233

Gene Structure 23276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0468200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTGTCTTCTTTCCAGTATGCAGAATTTGATTACTTTGAGGCTTGATCACAATAATTACATTCCATGGTTCTTTCAAATGGAAAGTTTACTGCAAAGTCTTGATTTAAAGGGATACACTGATGGTACATGTCCATATTCGCCTCAGTTCTTGATTACTAATGATGGGATAACTGCTGAAGTTACTAGGGAATTTAAGGAATGGAACAAAAATGATAAGGTAGTGCTATGTTTTATCTCTGCCACTACATCTAGTGAAGCATTGTCCTCTATAGTTGGCAGTAGAAATTCAAGGGAGGCTTGGCTCATGGATGGGTTTAGGCTCCCGTTGCAGAGACTGATGCTGGTTTCAATCCATCATCATCCAAGGTTAGTTTCTTTCGAAGAATCGAAGTACTGCTGGTATTTTATGCATTCTCATTTCATCTTAATGAGTCAGATTGTTAGAGTGCTGAGAGAAGAGTACGAATCAAGCCATCTTCCTAGGTTGGAAGCGATGATCAGCCTCCATTGTACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

173

Amino Acids

20.27

Weight (kDa)

6.05

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	25, 191, 286
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	4 cut(s)	127, 395, 464, 514
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	77, 291, 351
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
Alw26I	GTCTC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	337
ApoI	RAATTY	3 cut(s)	25, 191, 286
AspA2I	CCTAGG	1 cut(s)	482
AsuII	TTCGAA	1 cut(s)	381
AvrII	CCTAGG	1 cut(s)	482
BccI	CCATC	5 cut(s)	116, 158, 305, 363, 483
BciVI	GTATCC	1 cut(s)	107
BclI	TGATCA	2 cut(s)	46, 498
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	3 cut(s)	186, 252, 483
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	107
BlnI	CCTAGG	1 cut(s)	482
BmcAI	AGTACT	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	65, 365, 482
Bse1I	ACTGG	1 cut(s)	15
BseDI	CCNNGG	3 cut(s)	65, 365, 482
BseGI	GGATG	2 cut(s)	316, 361
BseMII	CTCAG	2 cut(s)	158, 443
BseNI	ACTGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	412
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	512
Bsp143I	GATC	2 cut(s)	46, 498
Bsp19I	CCATGG	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	157, 444
BspLI	GGNNCC	1 cut(s)	323
BspT104I	TTCGAA	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	65, 365, 482
BssMI	GATC	2 cut(s)	46, 498
BssT1I	CCWWGG	3 cut(s)	65, 365, 482
Bst6I	CTCTTC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	144, 452
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	316, 361
BstKTI	GATC	2 cut(s)	49, 501
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	2 cut(s)	46, 498
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	316, 361
BtsIMutI	CAGTG	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	337
Csp6I	GTAC	4 cut(s)	126, 394, 463, 513
CviAII	CATG	3 cut(s)	66, 129, 307
CviJI	RGCY	6 cut(s)	43, 299, 304, 322, 474, 504
CviKI_1	RGCY	6 cut(s)	43, 299, 304, 322, 474, 504
CviQI	GTAC	4 cut(s)	126, 394, 463, 513
DdeI	CTNAG	2 cut(s)	144, 452
DpnI	GATC	2 cut(s)	48, 500
DpnII	GATC	2 cut(s)	46, 498
DraI	TTTAAA	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	3 cut(s)	65, 365, 482
Eco57I	CTGAAG	1 cut(s)	198
EcoT14I	CCWWGG	3 cut(s)	65, 365, 482
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	3 cut(s)	65, 365, 482
FaeI	CATG	3 cut(s)	69, 132, 310
FaiI	YATR	8 cut(s)	20, 67, 130, 136, 229, 272, 308, 410
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FatI	CATG	3 cut(s)	65, 128, 306
FbaI	TGATCA	2 cut(s)	46, 498
FokI	GGATG	2 cut(s)	323, 348
FspBI	CTAG	3 cut(s)	186, 252, 483
Hin1II	CATG	3 cut(s)	69, 132, 310
HinfI	GANTC	3 cut(s)	386, 433, 467
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	2 cut(s)	101, 151
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	22, 94, 331, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	2 cut(s)	144, 452
Hsp92II	CATG	3 cut(s)	69, 132, 310
Ksp22I	TGATCA	2 cut(s)	46, 498
Kzo9I	GATC	2 cut(s)	46, 498
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	3 cut(s)	28, 329, 385
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	3 cut(s)	186, 252, 483
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	48, 500
MboI	GATC	2 cut(s)	46, 498
MboII	GAAGA	3 cut(s)	395, 470, 470
MluCI	AATT	4 cut(s)	25, 55, 191, 286
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	5 cut(s)	33, 153, 277, 289, 515
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	3 cut(s)	107, 195, 428
MslI	CAYNNNNRTG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	46, 498
NlaIII	CATG	3 cut(s)	69, 132, 310
NlaIV	GGNNCC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	381
PciI	ACATGT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	386, 467
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
PscI	ACATGT	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	337
RsaI	GTAC	4 cut(s)	127, 395, 464, 514
RsaNI	GTAC	4 cut(s)	126, 394, 463, 513
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	107, 195, 428
Sau3AI	GATC	2 cut(s)	46, 498
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	1 cut(s)	442
SetI	ASST	3 cut(s)	222, 371, 488
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	25, 55, 191, 286
SspMI	CTAG	3 cut(s)	186, 252, 483
StyI	CCWWGG	3 cut(s)	65, 365, 482
TaqI	TCGA	2 cut(s)	381, 389
TasI	AATT	4 cut(s)	25, 55, 191, 286
TatI	WGTACW	2 cut(s)	393, 512
TfiI	GAWTC	2 cut(s)	386, 467
Tru1I	TTAA	3 cut(s)	107, 195, 428
Tru9I	TTAA	3 cut(s)	107, 195, 428
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	412
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	3 cut(s)	25, 191, 286
XceI	RCATGY	1 cut(s)	132
XmaJI	CCTAGG	1 cut(s)	482
XspI	CTAG	3 cut(s)	186, 252, 483
ZrmI	AGTACT	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.