Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

908997 .. 912360

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTTTCCACCACCACCACCAAACCCCTCACGAAATGGCCTTCCACGGCTCCTTCCCGGACACCCAACAACCCCCTCAGCTCGCCCCCACGTGGCTCAACGCGCCGCCGTTCCGCTCCTCGCCGTCCGGGAAAAGCGGCGAGGAGGACGGCGAGGATGAGATGGAGGGCGAGAGCGGGAGGTTCAAAGCCGACATAGTGGGACACCCTCTGTACGAACAGTTGGTCTCCGCACACGTGTCGTGCCTGAGGATCGCCACGCCGGTCGACCAGCTGCCGAAGATCGACGAGCAGCTCGTGCAGTCGCAGCGCGTGGTGGACAAGTACTCGGCGATGAGAGCCAACGGCGAGTTCGGAGTCCTGGATGAGAAAGAACTTGACATGTTCATGACAAACTATGTTCTGTTGCTGTGTTCCTTCAAAGAACAACTGCAGCAACATGTTCGAGTTCATGCCATGGAAGCAGTCATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAAGCTTGACAGGTGTGTCAACGGCTGAGGGCACAGGGGCTACAATGTCTGATGATGATGAACAATTCGACGGTGACATTAGCTCATATGATGCAAGTTTAGATGGACATGACACCATGGGATTTGGTCCTCTCATGCCAACTGAAAGTGAGAGGTCTCTGATGGAGCGTGTAAGGCAAGAATTGAAGCATGAACTGAAACAGGGCTACAAGGAAAAGATTGTTGACATTCGAGAGGAAATTCTGCGTAAGAGAAGAGCAGGGAAACTTCCTGGTGACACCACTTCTGTGTTGAAAGCTTGGTGGCAAACACATTCCAAATGGCCTTACCCAACTGAGGAAGACAAAGCGAGGCTGGTGCAGGAAACAGGGTTGCAATTGAAGCAGATCAATAACTGGTTCATCAATCAAAGAAAAAGGAATTGGCACAGCAACCTCTCCACAACTTCTGTTTTGAAGAGCAAGCGCAAGAGTAATGCAGGTGATGGCAACAGTCAACGACTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

336

Amino Acids

38.09

Weight (kDa)

5.71

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	62 - 102	2.8e-17	KNOX1 domain
KNOX2	PF03791	122 - 170	1.2e-15	KNOX2 domain
ELK	PF03789	227 - 248	5.5e-07	ELK domain
Homeobox_KN	PF05920	267 - 306	8.7e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	968
AasI	GACNNNNNNGTC	1 cut(s)	514
Acc36I	ACCTGC	1 cut(s)	968
AccBSI	CCGCTC	2 cut(s)	117, 177
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	2 cut(s)	104, 312
AciI	CCGC	5 cut(s)	107, 115, 138, 177, 231
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	738
AcvI	CACGTG	2 cut(s)	93, 238
AfaI	GTAC	2 cut(s)	215, 326
AfiI	CCNNNNNNNGG	2 cut(s)	93, 835
AflIII	ACRYGT	4 cut(s)	235, 237, 381, 439
AgsI	TTSAA	6 cut(s)	187, 421, 685, 793, 880, 955
AjnI	CCWGG	2 cut(s)	360, 769
AjuI	GAANNNNNNNTTGG	4 cut(s)	335, 367, 904, 936
AleI	CACNNNNGTG	1 cut(s)	785
AluBI	AGCT	7 cut(s)	82, 274, 295, 484, 504, 582, 797
AluI	AGCT	7 cut(s)	82, 274, 295, 484, 504, 582, 797
Alw26I	GTCTC	2 cut(s)	232, 660
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	2 cut(s)	39, 821
ApeKI	GCWGC	4 cut(s)	274, 292, 307, 433
ApoI	RAATTY	1 cut(s)	738
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspLEI	GCGC	3 cut(s)	106, 312, 966
AspS9I	GGNCC	1 cut(s)	626
AsuC2I	CCSGG	2 cut(s)	59, 130
AsuHPI	GGTGA	3 cut(s)	584, 785, 992
AvaII	GGWCC	1 cut(s)	626
AxyI	CCTNAGG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	533
BauI	CACGAG	1 cut(s)	296
BbrPI	CACGTG	2 cut(s)	93, 238
BbsI	GAAGAC	1 cut(s)	846
BbvCI	CCTCAGC	2 cut(s)	78, 525
BbvI	GCAGC	4 cut(s)	261, 304, 319, 445
BccI	CCATC	4 cut(s)	157, 596, 655, 977
BceAI	ACGGC	6 cut(s)	64, 94, 109, 166, 361, 537
BcgI	CGANNNNNNTGC	6 cut(s)	222, 256, 425, 459, 838, 872
BciT130I	CCWGG	2 cut(s)	362, 771
BcnI	CCSGG	2 cut(s)	59, 130
BcoDI	GTCTC	2 cut(s)	232, 660
BfmI	CTRYAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	968
BisI	GCNGC	6 cut(s)	107, 139, 275, 293, 308, 434
BlsI	GCNGC	6 cut(s)	108, 140, 276, 294, 309, 435
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	4 cut(s)	59, 130, 362, 771
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	4 cut(s)	59, 130, 362, 771
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	846
Bpu10I	CCTNAGC	2 cut(s)	78, 525
BpuEI	CTTGAG	2 cut(s)	506, 986
BpuMI	CCSGG	2 cut(s)	59, 130
BsaAI	YACGTR	2 cut(s)	93, 238
BsaI	GGTCTC	2 cut(s)	232, 660
BsaJI	CCNNGG	3 cut(s)	46, 456, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 835
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	899
Bse21I	CCTNAGG	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	362, 771
BseDI	CCNNGG	3 cut(s)	46, 456, 615
BseGI	GGATG	2 cut(s)	163, 370
BseLI	CCNNNNNNNGG	2 cut(s)	93, 835
BseMII	CTCAG	4 cut(s)	92, 239, 516, 825
BseNI	ACTGG	1 cut(s)	899
BseRI	GAGGAG	2 cut(s)	109, 158
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	4 cut(s)	261, 304, 319, 445
BsgI	GTGCAG	2 cut(s)	320, 878
Bsh1236I	CGCG	2 cut(s)	104, 312
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	41, 823
BsiEI	CGRYCG	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	59, 129, 263
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	93, 835
BsmAI	GTCTC	2 cut(s)	232, 660
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	41, 823
Bso31I	GGTCTC	2 cut(s)	232, 660
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	3 cut(s)	252, 282, 885
Bsp19I	CCATGG	2 cut(s)	456, 615
BspACI	CCGC	5 cut(s)	107, 115, 138, 177, 231
BspANI	GGCC	2 cut(s)	41, 823
BspCNI	CTCAG	4 cut(s)	91, 240, 517, 826
BspFNI	CGCG	2 cut(s)	104, 312
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	968
BspPI	GGATC	1 cut(s)	260
BspQI	GCTCTTC	2 cut(s)	748, 950
BspTNI	GGTCTC	2 cut(s)	232, 660
BsrBI	CCGCTC	2 cut(s)	117, 177
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	899
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	3 cut(s)	46, 456, 615
BssMI	GATC	3 cut(s)	252, 282, 885
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	2 cut(s)	456, 615
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	2 cut(s)	362, 771
Bst4CI	ACNGT	3 cut(s)	222, 572, 992
Bst6I	CTCTTC	2 cut(s)	748, 950
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBAI	YACGTR	2 cut(s)	93, 238
BstC8I	GCNNGC	2 cut(s)	84, 962
BstDEI	CTNAG	4 cut(s)	78, 248, 525, 834
BstDSI	CCRYGG	3 cut(s)	46, 456, 615
BstF5I	GGATG	2 cut(s)	163, 370
BstFNI	CGCG	2 cut(s)	104, 312
BstHHI	GCGC	3 cut(s)	106, 312, 966
BstKTI	GATC	3 cut(s)	255, 285, 888
BstMAI	GTCTC	2 cut(s)	232, 660
BstMBI	GATC	3 cut(s)	252, 282, 885
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	8 cut(s)	103, 298, 307, 338, 461, 470, 673, 880
BstNI	CCWGG	2 cut(s)	362, 771
BstNSI	RCATGY	2 cut(s)	385, 443
BstSCI	CCNGG	4 cut(s)	57, 128, 360, 769
BstSFI	CTRYAG	1 cut(s)	431
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	2 cut(s)	104, 312
BstV1I	GCAGC	4 cut(s)	261, 304, 319, 445
BstV2I	GAAGAC	1 cut(s)	846
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	41, 823
BtgI	CCRYGG	3 cut(s)	46, 456, 615
BtgZI	GCGATG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	163, 370
BveI	ACCTGC	1 cut(s)	968
Cac8I	GCNNGC	2 cut(s)	84, 962
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	3 cut(s)	106, 312, 966
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	2 cut(s)	214, 325
CviQI	GTAC	2 cut(s)	214, 325
DdeI	CTNAG	4 cut(s)	78, 248, 525, 834
DpnI	GATC	3 cut(s)	254, 284, 887
DpnII	GATC	3 cut(s)	252, 282, 885
DrdI	GACNNNNNNGTC	1 cut(s)	514
DseDI	GACNNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	748, 950
EarI	CTCTTC	2 cut(s)	748, 950
Eco130I	CCWWGG	2 cut(s)	456, 615
Eco31I	GGTCTC	2 cut(s)	232, 660
Eco47I	GGWCC	1 cut(s)	626
Eco72I	CACGTG	2 cut(s)	93, 238
Eco81I	CCTNAGG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	360, 769
EcoT14I	CCWWGG	2 cut(s)	456, 615
ErhI	CCWWGG	2 cut(s)	456, 615
FaqI	GGGAC	1 cut(s)	216
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	6 cut(s)	107, 139, 275, 293, 308, 434
FokI	GGATG	2 cut(s)	170, 377
Fsp4HI	GCNGC	6 cut(s)	107, 139, 275, 293, 308, 434
GlaI	GCGC	3 cut(s)	105, 311, 965
GluI	GCNGC	6 cut(s)	107, 139, 275, 293, 308, 434
HaeIII	GGCC	2 cut(s)	41, 823
HapII	CCGG	3 cut(s)	59, 129, 263
HhaI	GCGC	3 cut(s)	106, 312, 966
Hin6I	GCGC	3 cut(s)	104, 310, 964
HinP1I	GCGC	3 cut(s)	104, 310, 964
HincII	GTYRAC	4 cut(s)	268, 519, 724, 995
HindII	GTYRAC	4 cut(s)	268, 519, 724, 995
HindIII	AAGCTT	2 cut(s)	502, 795
HinfI	GANTC	2 cut(s)	357, 999
HpaII	CCGG	3 cut(s)	59, 129, 263
HphI	GGTGA	3 cut(s)	584, 785, 992
Hpy166II	GTNNAC	5 cut(s)	268, 319, 519, 724, 995
Hpy188I	TCNGA	3 cut(s)	356, 550, 660
Hpy188III	TCNNGA	3 cut(s)	32, 388, 731
Hpy8I	GTNNAC	5 cut(s)	268, 319, 519, 724, 995
Hpy99I	CGWCG	2 cut(s)	290, 572
HpyAV	CCTTC	3 cut(s)	52, 64, 427
HpyCH4III	ACNGT	3 cut(s)	222, 572, 992
HpyCH4IV	ACGT	2 cut(s)	92, 237
HpyCH4V	TGCA	6 cut(s)	301, 433, 593, 859, 874, 977
HpyF10VI	GCNNNNNNNGC	8 cut(s)	103, 298, 307, 338, 461, 470, 673, 880
HpyF3I	CTNAG	4 cut(s)	78, 248, 525, 834
HpySE526I	ACGT	2 cut(s)	92, 237
HspAI	GCGC	3 cut(s)	104, 310, 964
Kzo9I	GATC	3 cut(s)	252, 282, 885
LguI	GCTCTTC	2 cut(s)	748, 950
LmnI	GCTCC	4 cut(s)	56, 122, 481, 664
Lsp1109I	GCAGC	4 cut(s)	261, 304, 319, 445
LweI	GCATC	1 cut(s)	580
MaeII	ACGT	2 cut(s)	92, 237
MaeIII	GTNAC	2 cut(s)	572, 773
MalI	GATC	3 cut(s)	254, 284, 887
MbiI	CCGCTC	2 cut(s)	117, 177
MboI	GATC	3 cut(s)	252, 282, 885
MboII	GAAGA	4 cut(s)	292, 765, 851, 967
MfeI	CAATTG	1 cut(s)	875
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	5 cut(s)	563, 680, 738, 875, 919
MlyI	GAGTC	2 cut(s)	366, 993
MslI	CAYNNNNRTG	2 cut(s)	386, 785
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	3 cut(s)	59, 129, 263
MspR9I	CCNGG	4 cut(s)	59, 130, 362, 771
MunI	CAATTG	1 cut(s)	875
MvaI	CCWGG	2 cut(s)	362, 771
MvnI	CGCG	2 cut(s)	104, 312
MwoI	GCNNNNNNNGC	8 cut(s)	103, 298, 307, 338, 461, 470, 673, 880
NciI	CCSGG	2 cut(s)	59, 130
NcoI	CCATGG	2 cut(s)	456, 615
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	3 cut(s)	252, 282, 885
NlaIV	GGNNCC	1 cut(s)	52
NmeAIII	GCCGAG	1 cut(s)	308
NmuCI	GTSAC	2 cut(s)	572, 773
NspI	RCATGY	2 cut(s)	385, 443
OliI	CACNNNNGTG	1 cut(s)	785
PagI	TCATGA	1 cut(s)	387
PaqCI	CACCTGC	1 cut(s)	968
PciI	ACATGT	2 cut(s)	381, 439
PciSI	GCTCTTC	2 cut(s)	748, 950
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfoI	TCCNGGA	3 cut(s)	57, 128, 360
PkrI	GCNGC	6 cut(s)	108, 140, 276, 294, 309, 435
PleI	GAGTC	2 cut(s)	365, 993
PmaCI	CACGTG	2 cut(s)	93, 238
PmlI	CACGTG	2 cut(s)	93, 238
PpsI	GAGTC	2 cut(s)	365, 993
Ppu21I	YACGTR	2 cut(s)	93, 238
PscI	ACATGT	2 cut(s)	381, 439
Psp6I	CCWGG	2 cut(s)	360, 769
PspCI	CACGTG	2 cut(s)	93, 238
PspGI	CCWGG	2 cut(s)	360, 769
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	626
PstI	CTGCAG	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	215, 326
RsaNI	GTAC	2 cut(s)	214, 325
RseI	CAYNNNNRTG	2 cut(s)	386, 785
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	2 cut(s)	748, 950
SatI	GCNGC	6 cut(s)	107, 139, 275, 293, 308, 434
Sau3AI	GATC	3 cut(s)	252, 282, 885
Sau96I	GGNCC	1 cut(s)	626
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	2 cut(s)	366, 993
ScrFI	CCNGG	4 cut(s)	59, 130, 362, 771
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	2 cut(s)	386, 785
SmlI	CTYRAG	2 cut(s)	485, 1001
SmoI	CTYRAG	2 cut(s)	485, 1001
Sse9I	AATT	5 cut(s)	563, 680, 738, 875, 919
SsiI	CCGC	5 cut(s)	107, 115, 138, 177, 231
StyD4I	CCNGG	4 cut(s)	57, 128, 360, 769
StyI	CCWWGG	2 cut(s)	456, 615
TaaI	ACNGT	3 cut(s)	222, 572, 992
TaiI	ACGT	2 cut(s)	95, 240
TaqI	TCGA	5 cut(s)	267, 285, 445, 567, 730
TasI	AATT	5 cut(s)	563, 680, 738, 875, 919
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	2 cut(s)	109, 141
TseFI	GTSAC	2 cut(s)	572, 773
TseI	GCWGC	4 cut(s)	274, 292, 307, 433
Tsp45I	GTSAC	2 cut(s)	572, 773
TspDTI	ATGAA	5 cut(s)	376, 440, 573, 705, 889
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	738
XceI	RCATGY	2 cut(s)	385, 443
XmiI	GTMKAC	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.