pycom02g01200

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
682150 .. 684674
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01200.2

Sequence Viewer

Length: 1116 bp
ATGGCGTTTCATCACCACCAGCAGCAGACCCCTCACGAAATGTCGTTCCACTCCTTCGCGGAGGACCAGCCGCCGCTCTCCGGAGCTCTGACGTGGCTCAACAACGCAGCTTTCCGCCAGCAGAACACCAGCTTCAGCGGCCTTCACGACGCGGGGAGAAACGACGACGTGGTCATATCGCCGTCCGGGAAGAGCAGCAGCTGCAGCGATCGGAACCGGAGGGATATAAGCGGGTACGACGGCGGAGAAGAGGAGGAGGGGGAAGACGAGCTGGAGTGCGAGAGCGCGAGGTTCAAGGCCGACATCGTGGGACATCCGCTGTATGAGCAGCTTGTGTCGGCGCACGTGTCGTGCTTGAGGATCGCGACGCCGGTCGATCAGTTGCCGAGGATCGACGAGAAGCTCGTGCAGTCGCAGCGCGTGGTCGACAACTACTCGGCGCTCCGAGCCAATGGGGATGTTGGAGTCATGGATGAGAAAGAACTTGATTTGTTCATGACGAATTATGTTCTATTGCTTTGTTCCTTCAAAGAACAACTGCAGCAGCATGTCCGAGTTCACGCCATGGAAGCAGTGATGGCGTGTTGGGAGCTTGATCAGTCTCTGCAAAGCTTAACAGGTGTATCCACGGGTGAAGGAACGGGTGCTACCATGTCCGATGATGATGACCAGGTAGATAGCGACATCAACTCCTATGATGGAAGTCTGGACGGGCCAGACACCATGGGATTTGGCCCTCTTGTTCCGACTGAAAGTGAGAGGTCCTTAATGGAGCGCGTAAGGCAGGAACTGAAGCATGAACTGAAACAGGGTTACAAGGAAAAGATTGTCGACATTAGAGAGGAAATTCTGCGCAAGAGAAGAGCGGGGAAACTGCCAGGCGACACAACTTCTGTCTTAAAATCTTGGTGGCAATCGCATTCCAAGTGGCCTTACCCGACAGAGGAAGACAAGGCCAGATTGGTGCAGGAAACAGGCTTGCAGTTGAAACAGATCAATAACTGGTTTATTAATCAAAGAAAAAGGAATTGGCACAGCAACATTTCATCGACTTCCGTTCTGAAGAGCAAACGCAAGAGTAATGCAGGTGACATGAACAACCAGCGATTGAAGTAA

Protein Analysis

372

Amino Acids

41.99

Weight (kDa)

5.36

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1076
AasI GACNNNNNNGTC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 854
Acc36I ACCTGC 1 cut(s) 1076
AccBSI CCGCTC 2 cut(s) 76, 866
AccI GTMKAC 2 cut(s) 426, 831
AccII CGCG 6 cut(s) 59, 152, 287, 365, 420, 777
AccIII TCCGGA 1 cut(s) 80
AclWI GGATC 2 cut(s) 368, 398
AcsI RAATTY 1 cut(s) 846
AcuI CTGAAG 3 cut(s) 118, 812, 1082
AcvI CACGTG 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 80, 943
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 4 cut(s) 295, 529, 988, 1111
AjiI CACGTC 2 cut(s) 93, 169
AjnI CCWGG 2 cut(s) 669, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 1012, 1044
AluBI AGCT 9 cut(s) 86, 110, 132, 201, 271, 331, 403, 592, 612
AluI AGCT 9 cut(s) 86, 110, 132, 201, 271, 331, 403, 592, 612
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 2 cut(s) 368, 398
AlwNI CAGNNNCTG 3 cut(s) 201, 604, 790
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 6 cut(s) 139, 297, 713, 733, 929, 954
ApoI RAATTY 1 cut(s) 846
AseI ATTAAT 1 cut(s) 1011
AspLEI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
AspS9I GGNCC 4 cut(s) 64, 713, 734, 762
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 3 cut(s) 5, 644, 1100
AvaII GGWCC 2 cut(s) 64, 762
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 270, 954
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 2 cut(s) 571, 692
BceAI ACGGC 2 cut(s) 166, 256
BciT130I CCWGG 2 cut(s) 671, 879
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 606
BfmI CTRYAG 2 cut(s) 202, 539
BfoI RGCGCY 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 1076
BfuI GTATCC 1 cut(s) 634
Bme1390I CCNGG 3 cut(s) 187, 671, 879
Bme18I GGWCC 2 cut(s) 64, 762
BmgBI CACGTC 2 cut(s) 93, 169
BmgT120I GGNCC 4 cut(s) 64, 713, 734, 762
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 3 cut(s) 187, 671, 879
BoxI GACNNNNGTC 1 cut(s) 371
BpiI GAAGAC 2 cut(s) 270, 954
BpmI CTGGAG 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 4 cut(s) 386, 564, 627, 723
BsaWI WCCGGW 2 cut(s) 80, 216
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 943
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 1007
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 2 cut(s) 671, 879
BseDI CCNNGG 4 cut(s) 386, 564, 627, 723
BseGI GGATG 3 cut(s) 313, 463, 478
BseLI CCNNNNNNNGG 2 cut(s) 80, 943
BseNI ACTGG 1 cut(s) 1007
BseRI GAGGAG 2 cut(s) 266, 269
BsgI GTGCAG 2 cut(s) 428, 986
Bsh1236I CGCG 6 cut(s) 59, 152, 287, 365, 420, 777
Bsh1285I CGRYCG 2 cut(s) 211, 375
BshFI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
BsiEI CGRYCG 2 cut(s) 211, 375
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 4 cut(s) 81, 186, 217, 371
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 80, 943
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
Bsp1286I GDGCHC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 6 cut(s) 208, 360, 376, 390, 595, 993
Bsp19I CCATGG 2 cut(s) 564, 723
Bsp68I TCGCGA 1 cut(s) 365
BspANI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 6 cut(s) 59, 152, 287, 365, 420, 777
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 215
BspMAI CTGCAG 2 cut(s) 206, 543
BspMI ACCTGC 1 cut(s) 1076
BspPI GGATC 2 cut(s) 368, 398
BspQI GCTCTTC 3 cut(s) 185, 856, 1058
BsrBI CCGCTC 2 cut(s) 76, 866
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 1007
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 4 cut(s) 386, 564, 627, 723
BssMI GATC 6 cut(s) 208, 360, 376, 390, 595, 993
BssNI GRCGYC 1 cut(s) 368
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 2 cut(s) 564, 723
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 671, 879
Bst6I CTCTTC 4 cut(s) 185, 243, 856, 1058
BstACI GRCGYC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 119, 980
BstDSI CCRYGG 3 cut(s) 564, 627, 723
BstF5I GGATG 3 cut(s) 313, 463, 478
BstFNI CGCG 6 cut(s) 59, 152, 287, 365, 420, 777
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
BstKTI GATC 6 cut(s) 211, 363, 379, 393, 598, 996
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 6 cut(s) 208, 360, 376, 390, 595, 993
BstMCI CGRYCG 2 cut(s) 211, 375
BstMWI GCNNNNNNNGC 9 cut(s) 138, 201, 204, 325, 415, 446, 569, 578, 781
BstNI CCWGG 2 cut(s) 671, 879
BstNSI RCATGY 1 cut(s) 551
BstPAI GACNNNNGTC 1 cut(s) 371
BstSCI CCNGG 3 cut(s) 185, 669, 877
BstSFI CTRYAG 2 cut(s) 202, 539
BstUI CGCG 6 cut(s) 59, 152, 287, 365, 420, 777
BstV2I GAAGAC 2 cut(s) 270, 954
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
BtgI CCRYGG 3 cut(s) 564, 627, 723
BtrI CACGTC 2 cut(s) 93, 169
BtsCI GGATG 3 cut(s) 313, 463, 478
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
BtuMI TCGCGA 1 cut(s) 365
BveI ACCTGC 1 cut(s) 1076
Cac8I GCNNGC 2 cut(s) 119, 980
CaiI CAGNNNCTG 3 cut(s) 201, 604, 790
CciI TCATGA 1 cut(s) 495
CfoI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 64, 713, 734, 762
CseI GACGC 2 cut(s) 158, 376
CsiI ACCWGGT 1 cut(s) 669
Csp6I GTAC 1 cut(s) 235
CviAII CATG 8 cut(s) 469, 496, 548, 565, 652, 724, 797, 1093
CviQI GTAC 1 cut(s) 235
DpnI GATC 6 cut(s) 210, 362, 378, 392, 597, 995
DpnII GATC 6 cut(s) 208, 360, 376, 390, 595, 993
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 4 cut(s) 185, 243, 856, 1058
EarI CTCTTC 4 cut(s) 185, 243, 856, 1058
EciI GGCGGA 2 cut(s) 104, 258
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 2 cut(s) 564, 723
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 64, 762
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 3 cut(s) 118, 812, 1082
Eco72I CACGTG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 762
EcoRII CCWGG 2 cut(s) 669, 877
EcoT14I CCWWGG 2 cut(s) 564, 723
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 2 cut(s) 564, 723
FaeI CATG 8 cut(s) 472, 499, 551, 568, 655, 727, 800, 1096
FaqI GGGAC 1 cut(s) 324
FatI CATG 8 cut(s) 468, 495, 547, 564, 651, 723, 796, 1092
FauI CCCGC 3 cut(s) 145, 224, 859
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 2 cut(s) 426, 831
FokI GGATG 3 cut(s) 300, 470, 485
FriOI GRGCYC 1 cut(s) 88
FspI TGCGCA 1 cut(s) 854
GlaI GCGC 6 cut(s) 286, 342, 419, 441, 776, 854
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
HapII CCGG 4 cut(s) 81, 186, 217, 371
HgaI GACGC 2 cut(s) 158, 376
HhaI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 8 cut(s) 472, 499, 551, 568, 655, 727, 800, 1096
Hin6I GCGC 6 cut(s) 285, 341, 418, 440, 775, 853
HinP1I GCGC 6 cut(s) 285, 341, 418, 440, 775, 853
HincII GTYRAC 2 cut(s) 427, 832
HindII GTYRAC 2 cut(s) 427, 832
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 1 cut(s) 465
HpaII CCGG 4 cut(s) 81, 186, 217, 371
HphI GGTGA 3 cut(s) 5, 644, 1100
Hpy166II GTNNAC 3 cut(s) 427, 559, 832
Hpy188I TCNGA 7 cut(s) 90, 213, 446, 554, 658, 747, 1062
Hpy188III TCNNGA 6 cut(s) 35, 81, 146, 364, 496, 707
Hpy8I GTNNAC 3 cut(s) 427, 559, 832
Hpy99I CGWCG 6 cut(s) 152, 167, 170, 242, 370, 398
HpyAV CCTTC 4 cut(s) 64, 152, 535, 629
HpyCH4IV ACGT 3 cut(s) 92, 168, 345
HpyCH4V TGCA 7 cut(s) 204, 409, 541, 607, 967, 982, 1085
HpyF10VI GCNNNNNNNGC 9 cut(s) 138, 201, 204, 325, 415, 446, 569, 578, 781
HpySE526I ACGT 3 cut(s) 92, 168, 345
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 8 cut(s) 472, 499, 551, 568, 655, 727, 800, 1096
HspAI GCGC 6 cut(s) 285, 341, 418, 440, 775, 853
Kpn2I TCCGGA 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 6 cut(s) 208, 360, 376, 390, 595, 993
LguI GCTCTTC 3 cut(s) 185, 856, 1058
LmnI GCTCC 4 cut(s) 83, 447, 589, 772
MabI ACCWGGT 1 cut(s) 669
MaeII ACGT 3 cut(s) 92, 168, 345
MaeIII GTNAC 2 cut(s) 812, 1088
MalI GATC 6 cut(s) 210, 362, 378, 392, 597, 995
MbiI CCGCTC 2 cut(s) 76, 866
MboI GATC 6 cut(s) 208, 360, 376, 390, 595, 993
MboII GAAGA 6 cut(s) 202, 260, 275, 873, 959, 1075
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 3 cut(s) 502, 846, 1027
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 2 cut(s) 442, 770
MroI TCCGGA 1 cut(s) 80
MseI TTAA 4 cut(s) 614, 767, 899, 1011
MspA1I CMGCKG 3 cut(s) 138, 201, 319
MspI CCGG 4 cut(s) 81, 186, 217, 371
MspR9I CCNGG 3 cut(s) 187, 671, 879
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 2 cut(s) 671, 879
MvnI CGCG 6 cut(s) 59, 152, 287, 365, 420, 777
MwoI GCNNNNNNNGC 9 cut(s) 138, 201, 204, 325, 415, 446, 569, 578, 781
NciI CCSGG 1 cut(s) 187
NcoI CCATGG 2 cut(s) 564, 723
NdeII GATC 6 cut(s) 208, 360, 376, 390, 595, 993
NlaIII CATG 8 cut(s) 472, 499, 551, 568, 655, 727, 800, 1096
NlaIV GGNNCC 1 cut(s) 215
NmeAIII GCCGAG 2 cut(s) 411, 416
NmuCI GTSAC 1 cut(s) 1088
NruI TCGCGA 1 cut(s) 365
NsbI TGCGCA 1 cut(s) 854
NspI RCATGY 1 cut(s) 551
PagI TCATGA 1 cut(s) 495
PaqCI CACCTGC 1 cut(s) 1076
PciSI GCTCTTC 3 cut(s) 185, 856, 1058
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 919
PflFI GACNNNGTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 185
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 473
PmaCI CACGTG 1 cut(s) 346
PmlI CACGTG 1 cut(s) 346
PpsI GAGTC 1 cut(s) 473
Ppu21I YACGTR 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 762
PshAI GACNNNNGTC 1 cut(s) 371
PshBI ATTAAT 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 762
Psp6I CCWGG 2 cut(s) 669, 877
PspCI CACGTG 1 cut(s) 346
PspGI CCWGG 2 cut(s) 669, 877
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 4 cut(s) 64, 713, 734, 762
PspPPI RGGWCCY 1 cut(s) 762
PsrI GAACNNNNNNTAC 2 cut(s) 631, 663
PstI CTGCAG 2 cut(s) 206, 543
PstNI CAGNNNCTG 3 cut(s) 201, 604, 790
PsyI GACNNNGTC 1 cut(s) 170
PvuI CGATCG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 201
RruI TCGCGA 1 cut(s) 365
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SacI GAGCTC 1 cut(s) 88
SalI GTCGAC 2 cut(s) 425, 830
SapI GCTCTTC 3 cut(s) 185, 856, 1058
SaqAI TTAA 4 cut(s) 614, 767, 899, 1011
Sau3AI GATC 6 cut(s) 208, 360, 376, 390, 595, 993
Sau96I GGNCC 4 cut(s) 64, 713, 734, 762
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 3 cut(s) 187, 671, 879
SduI GDGCHC 1 cut(s) 88
SexAI ACCWGGT 1 cut(s) 669
SfcI CTRYAG 2 cut(s) 202, 539
SinI GGWCC 2 cut(s) 64, 762
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 3 cut(s) 502, 846, 1027
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 3 cut(s) 185, 669, 877
StyI CCWWGG 2 cut(s) 564, 723
TaiI ACGT 3 cut(s) 95, 171, 348
TaqI TCGA 5 cut(s) 375, 393, 426, 831, 1049
TasI AATT 3 cut(s) 502, 846, 1027
TauI GCSGC 3 cut(s) 73, 76, 141
Tru1I TTAA 4 cut(s) 614, 767, 899, 1011
Tru9I TTAA 4 cut(s) 614, 767, 899, 1011
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 1 cut(s) 1088
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 4 cut(s) 484, 813, 1035, 1109
TspGWI ACGGA 1 cut(s) 1045
TspRI CASTG 1 cut(s) 579
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 64, 762
VspI ATTAAT 1 cut(s) 1011
XapI RAATTY 1 cut(s) 846
XceI RCATGY 1 cut(s) 551
XmiI GTMKAC 2 cut(s) 426, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.