Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

1465288 .. 1468918

Gene Structure 3631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG020200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAACAATGCCCTCAAGTCTACACCAACAACAGTAGAATCTAAGAGTCATCAATTATCAATCTTTGTCTTATTAACCCGATCTCCCATGTCATCTCCGCCACGTGTCGACCTATCTCCACCGTCCGATCCCCCCCCCCTCCTCGGTACCGGCGTCAGCCAGTCATCATCATCACTACTCTCAACTCAGAAACCAAAGTCGTCCCTCTCCCAAAAAAGAGCTTTGCGTTTCTCTCTAGGCCTCCCCTCTCTCTCTCTCTCTCTCTCTGCTCTTCTCGCTTTTCTGAACCGCGCTTTCCCTCATGAACTAAAAAAGCGCTTTTCTTTTCAGCCGAGAAAAATCTCAAAACCTCAAATGGCTTTTCACCACCACCAAACCCCTCACGAAATGGCCTTCCACGGCTCCTTTCCGGACACCCAACAACCCCCCCAGCTCGCCCCCACGTGGCTCAACGCGCCGCCGTTCCGCTCCCAGAACAGCTTCTCCCGGAACGACGACGTCGTCATATCGCCGTCCGGGAAGAGCGGCGATCGCGGCGGCGAAGAGGACGAGGAGGATGAACTGGAGTTCGAGAGCGGGAGGTTCAAAGCCGACATAGTAGGCCACCCTTTGTACGAACAGTTGGTCTCCGCACACGTGTCGTGCCTGAGGATCGCCACGCCGGTCGACCAGCTGCCCAAGATCGACGAGCAGCTCGTGCAGTCGCAGCGCGTGGTGGACAAGTACTCGGCGATGAGAGCCAACGGCGATTTCCAAGTTATGGATGAGAAAGAACTTGACTCGTTCATGACAAACTATGTTCTTTTGCTTCGTTCCTTCAAAGAACAGCTGCAGCAACATGTTCGAGTTCATGCCATGGAGGCAGTCATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAAGCTTAACAGGTGTATCAACGGCTGAGGGCACAGGGGCCACAATGTCCGATGATGATGAACAATTCGACAGTGACATTAACTCGTATGATGCGAGTCTAGATGGAAATGACACCATGGGATTCGGTCCTCTCGTGCCAACTGAAAGTGAGAGATCTCTAATGGAGCGCGTAAGGCAAGAATTGAAGCATGAATTGAAACAGGGTTACAAGGAAAAGATTGTTGACATTCGTGAGGAAATTCTGCGTAAGAGAAGAGCAGGGAAACTTCCAGGTGACACCACTTCTGTGTTGAAAGCTTGGTGGCAATCACATTCCAAATGGCCTTACCCAACTGTGAGTTTCAAATTCCAACCATCTATAATAATCAATCCCCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

426

Amino Acids

47.82

Weight (kDa)

6.13

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	195 - 235	3.9e-17	KNOX1 domain
KNOX2	PF03791	253 - 303	3.3e-15	KNOX2 domain
ELK	PF03789	360 - 381	7.3e-07	ELK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1279
AasI	GACNNNNNNGTC	1 cut(s)	500
AatII	GACGTC	1 cut(s)	501
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccBSI	CCGCTC	3 cut(s)	468, 525, 576
AccI	GTMKAC	3 cut(s)	20, 108, 666
AccII	CGCG	5 cut(s)	291, 455, 534, 711, 1068
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	9 cut(s)	98, 289, 458, 466, 525, 534, 537, 576, 630
AclWI	GGATC	2 cut(s)	122, 659
AcsI	RAATTY	2 cut(s)	1137, 1244
AcvI	CACGTG	3 cut(s)	104, 444, 637
AcyI	GRCGYC	2 cut(s)	153, 498
AfaI	GTAC	3 cut(s)	148, 614, 725
AfeI	AGCGCT	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	143, 444, 760
AflIII	ACRYGT	4 cut(s)	103, 634, 636, 838
AgsI	TTSAA	6 cut(s)	586, 820, 1084, 1096, 1192, 1243
AjnI	CCWGG	1 cut(s)	1168
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AleI	CACNNNNGTG	1 cut(s)	1184
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	9 cut(s)	221, 433, 480, 673, 694, 829, 883, 903, 1196
AluI	AGCT	9 cut(s)	221, 433, 480, 673, 694, 829, 883, 903, 1196
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	122, 659
Aor13HI	TCCGGA	1 cut(s)	409
Aor51HI	AGCGCT	1 cut(s)	317
AoxI	GGCC	5 cut(s)	238, 390, 601, 936, 1220
ApeKI	GCWGC	5 cut(s)	673, 691, 706, 829, 832
ApoI	RAATTY	2 cut(s)	1137, 1244
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
AsiSI	GCGATCGC	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	479
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	5 cut(s)	293, 318, 457, 711, 1068
AspS9I	GGNCC	2 cut(s)	936, 1025
AsuC2I	CCSGG	2 cut(s)	487, 517
AsuHPI	GGTGA	2 cut(s)	356, 1184
AvaII	GGWCC	1 cut(s)	1025
AxyI	CCTNAGG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	932
BaeI	ACNNNNGTAYC	4 cut(s)	138, 171, 897, 930
BanI	GGYRCC	1 cut(s)	146
BauI	CACGAG	2 cut(s)	695, 1031
BbrPI	CACGTG	3 cut(s)	104, 444, 637
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	5 cut(s)	660, 703, 718, 816, 844
BccI	CCATC	2 cut(s)	995, 1261
BceAI	ACGGC	5 cut(s)	415, 445, 496, 760, 936
BcgI	CGANNNNNNTGC	4 cut(s)	621, 655, 824, 858
BciT130I	CCWGG	1 cut(s)	1170
BcnI	CCSGG	2 cut(s)	487, 517
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	2 cut(s)	236, 998
BfmI	CTRYAG	1 cut(s)	830
BfoI	RGCGCY	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	860
BglII	AGATCT	1 cut(s)	1052
BisI	GCNGC	9 cut(s)	458, 526, 535, 538, 674, 692, 707, 830, 833
BlsI	GCNGC	9 cut(s)	459, 527, 536, 539, 675, 693, 708, 831, 834
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	3 cut(s)	487, 517, 1170
Bme18I	GGWCC	1 cut(s)	1025
BmgT120I	GGNCC	2 cut(s)	936, 1025
BmiI	GGNNCC	3 cut(s)	148, 403, 937
BmrFI	CCNGG	3 cut(s)	487, 517, 1170
BmsI	GCATC	1 cut(s)	979
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	905
BpuMI	CCSGG	2 cut(s)	487, 517
BsaAI	YACGTR	3 cut(s)	104, 444, 637
BsaHI	GRCGYC	2 cut(s)	153, 498
BsaI	GGTCTC	1 cut(s)	631
BsaJI	CCNNGG	4 cut(s)	142, 397, 855, 1014
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 467, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 444, 760
Bse118I	RCCGGY	2 cut(s)	149, 661
Bse1I	ACTGG	2 cut(s)	160, 567
Bse21I	CCTNAGG	1 cut(s)	647
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	1170
BseDI	CCNNGG	4 cut(s)	142, 397, 855, 1014
BseGI	GGATG	2 cut(s)	562, 769
BseLI	CCNNNNNNNGG	3 cut(s)	143, 444, 760
BseMII	CTCAG	3 cut(s)	200, 638, 915
BseNI	ACTGG	2 cut(s)	160, 567
BseRI	GAGGAG	2 cut(s)	131, 566
BseSI	GKGCMC	1 cut(s)	932
BseXI	GCAGC	5 cut(s)	660, 703, 718, 816, 844
BseYI	CCCAGC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	719
Bsh1236I	CGCG	5 cut(s)	291, 455, 534, 711, 1068
Bsh1285I	CGRYCG	2 cut(s)	532, 666
BshFI	GGCC	5 cut(s)	240, 392, 603, 938, 1222
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	2 cut(s)	532, 666
BsiSI	CCGG	5 cut(s)	150, 410, 487, 516, 662
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	143, 444, 760
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	5 cut(s)	240, 392, 603, 938, 1222
Bso31I	GGTCTC	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	932
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
Bsp19I	CCATGG	2 cut(s)	855, 1014
BspACI	CCGC	9 cut(s)	98, 289, 458, 466, 525, 534, 537, 576, 630
BspANI	GGCC	5 cut(s)	240, 392, 603, 938, 1222
BspCNI	CTCAG	3 cut(s)	199, 639, 916
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	5 cut(s)	291, 455, 534, 711, 1068
BspHI	TCATGA	2 cut(s)	301, 786
BspLI	GGNNCC	3 cut(s)	148, 403, 937
BspMAI	CTGCAG	1 cut(s)	834
BspPI	GGATC	2 cut(s)	122, 659
BspQI	GCTCTTC	3 cut(s)	276, 515, 1147
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	631
BsrBI	CCGCTC	3 cut(s)	468, 525, 576
BsrFI	RCCGGY	2 cut(s)	149, 661
BsrI	ACTGG	2 cut(s)	160, 567
BssAI	RCCGGY	2 cut(s)	149, 661
BssECI	CCNNGG	4 cut(s)	142, 397, 855, 1014
BssMI	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
BssNI	GRCGYC	2 cut(s)	153, 498
BssSI	CACGAG	2 cut(s)	695, 1031
BssT1I	CCWWGG	2 cut(s)	855, 1014
Bst2BI	CACGAG	2 cut(s)	695, 1031
Bst2UI	CCWGG	1 cut(s)	1170
Bst4CI	ACNGT	5 cut(s)	34, 123, 621, 971, 1234
Bst6I	CTCTTC	4 cut(s)	276, 515, 537, 1147
BstACI	GRCGYC	2 cut(s)	153, 498
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstBAI	YACGTR	3 cut(s)	104, 444, 637
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	42, 186, 647, 924
BstDSI	CCRYGG	3 cut(s)	397, 855, 1014
BstF5I	GGATG	2 cut(s)	562, 769
BstFNI	CGCG	5 cut(s)	291, 455, 534, 711, 1068
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	5 cut(s)	293, 318, 457, 711, 1068
BstKTI	GATC	6 cut(s)	83, 130, 532, 654, 684, 1055
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
BstMCI	CGRYCG	2 cut(s)	532, 666
BstNI	CCWGG	1 cut(s)	1170
BstNSI	RCATGY	1 cut(s)	842
BstSCI	CCNGG	3 cut(s)	485, 515, 1168
BstSFI	CTRYAG	1 cut(s)	830
BstSLI	GKGCMC	1 cut(s)	932
BstUI	CGCG	5 cut(s)	291, 455, 534, 711, 1068
BstV1I	GCAGC	5 cut(s)	660, 703, 718, 816, 844
BstX2I	RGATCY	1 cut(s)	1052
BstYI	RGATCY	1 cut(s)	1052
Bsu36I	CCTNAGG	1 cut(s)	647
BsuRI	GGCC	5 cut(s)	240, 392, 603, 938, 1222
BtgI	CCRYGG	3 cut(s)	397, 855, 1014
BtgZI	GCGATG	1 cut(s)	746
BtsCI	GGATG	2 cut(s)	562, 769
BtsIMutI	CAGTG	1 cut(s)	976
Cac8I	GCNNGC	1 cut(s)	435
CciI	TCATGA	2 cut(s)	301, 786
CfoI	GCGC	5 cut(s)	293, 318, 457, 711, 1068
Cfr10I	RCCGGY	2 cut(s)	149, 661
Cfr13I	GGNCC	2 cut(s)	936, 1025
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	147, 613, 724
CviAII	CATG	9 cut(s)	88, 302, 787, 839, 851, 856, 868, 1015, 1088
CviQI	GTAC	3 cut(s)	147, 613, 724
DdeI	CTNAG	4 cut(s)	42, 186, 647, 924
DpnI	GATC	6 cut(s)	82, 129, 531, 653, 683, 1054
DpnII	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	4 cut(s)	276, 515, 537, 1147
EarI	CTCTTC	4 cut(s)	276, 515, 537, 1147
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	855, 1014
Eco147I	AGGCCT	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	1025
Eco47III	AGCGCT	1 cut(s)	317
Eco72I	CACGTG	3 cut(s)	104, 444, 637
Eco81I	CCTNAGG	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	1168
EcoT14I	CCWWGG	2 cut(s)	855, 1014
ErhI	CCWWGG	2 cut(s)	855, 1014
FaeI	CATG	9 cut(s)	91, 305, 790, 842, 854, 859, 871, 1018, 1091
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	9 cut(s)	87, 301, 786, 838, 850, 855, 867, 1014, 1087
FauI	CCCGC	1 cut(s)	569
FblI	GTMKAC	3 cut(s)	20, 108, 666
Fnu4HI	GCNGC	9 cut(s)	458, 526, 535, 538, 674, 692, 707, 830, 833
FokI	GGATG	2 cut(s)	569, 776
Fsp4HI	GCNGC	9 cut(s)	458, 526, 535, 538, 674, 692, 707, 830, 833
FspBI	CTAG	2 cut(s)	236, 998
GlaI	GCGC	5 cut(s)	292, 317, 456, 710, 1067
GluI	GCNGC	9 cut(s)	458, 526, 535, 538, 674, 692, 707, 830, 833
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	5 cut(s)	240, 392, 603, 938, 1222
HapII	CCGG	5 cut(s)	150, 410, 487, 516, 662
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	5 cut(s)	293, 318, 457, 711, 1068
Hin1I	GRCGYC	2 cut(s)	153, 498
Hin1II	CATG	9 cut(s)	91, 305, 790, 842, 854, 859, 871, 1018, 1091
Hin6I	GCGC	5 cut(s)	291, 316, 455, 709, 1066
HinP1I	GCGC	5 cut(s)	291, 316, 455, 709, 1066
HincII	GTYRAC	3 cut(s)	109, 667, 1123
HindII	GTYRAC	3 cut(s)	109, 667, 1123
HindIII	AAGCTT	2 cut(s)	901, 1194
HinfI	GANTC	5 cut(s)	38, 46, 779, 994, 1020
HpaII	CCGG	5 cut(s)	150, 410, 487, 516, 662
HphI	GGTGA	2 cut(s)	356, 1184
Hpy166II	GTNNAC	5 cut(s)	21, 109, 667, 718, 1123
Hpy188I	TCNGA	4 cut(s)	127, 189, 285, 949
Hpy188III	TCNNGA	7 cut(s)	302, 383, 410, 571, 787, 998, 1130
Hpy8I	GTNNAC	5 cut(s)	21, 109, 667, 718, 1123
Hpy99I	CGWCG	4 cut(s)	497, 500, 503, 689
HpyAV	CCTTC	2 cut(s)	403, 826
HpyCH4III	ACNGT	5 cut(s)	34, 123, 621, 971, 1234
HpyCH4IV	ACGT	4 cut(s)	103, 443, 498, 636
HpyCH4V	TGCA	2 cut(s)	700, 832
HpyF3I	CTNAG	4 cut(s)	42, 186, 647, 924
HpySE526I	ACGT	4 cut(s)	103, 443, 498, 636
Hsp92I	GRCGYC	2 cut(s)	153, 498
Hsp92II	CATG	9 cut(s)	91, 305, 790, 842, 854, 859, 871, 1018, 1091
HspAI	GCGC	5 cut(s)	291, 316, 455, 709, 1066
Kpn2I	TCCGGA	1 cut(s)	409
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
LguI	GCTCTTC	3 cut(s)	276, 515, 1147
LmnI	GCTCC	4 cut(s)	407, 473, 880, 1063
Lsp1109I	GCAGC	5 cut(s)	660, 703, 718, 816, 844
LweI	GCATC	1 cut(s)	979
MaeI	CTAG	2 cut(s)	236, 998
MaeII	ACGT	4 cut(s)	103, 443, 498, 636
MaeIII	GTNAC	3 cut(s)	971, 1103, 1172
MalI	GATC	6 cut(s)	82, 129, 531, 653, 683, 1054
MbiI	CCGCTC	3 cut(s)	468, 525, 576
MboI	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
MboII	GAAGA	4 cut(s)	263, 532, 554, 1164
MflI	RGATCY	1 cut(s)	1052
MhlI	GDGCHC	1 cut(s)	932
MluCI	AATT	6 cut(s)	53, 962, 1079, 1091, 1137, 1244
MlyI	GAGTC	3 cut(s)	55, 773, 1003
MmeI	TCCRAC	1 cut(s)	1273
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	3 cut(s)	74, 905, 978
MslI	CAYNNNNRTG	1 cut(s)	1184
MspA1I	CMGCKG	2 cut(s)	673, 829
MspI	CCGG	5 cut(s)	150, 410, 487, 516, 662
MspR9I	CCNGG	3 cut(s)	487, 517, 1170
MvaI	CCWGG	1 cut(s)	1170
MvnI	CGCG	5 cut(s)	291, 455, 534, 711, 1068
NciI	CCSGG	2 cut(s)	487, 517
NcoI	CCATGG	2 cut(s)	855, 1014
NdeII	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
NlaIII	CATG	9 cut(s)	91, 305, 790, 842, 854, 859, 871, 1018, 1091
NlaIV	GGNNCC	3 cut(s)	148, 403, 937
NmeAIII	GCCGAG	2 cut(s)	357, 707
NmuCI	GTSAC	2 cut(s)	971, 1172
NspI	RCATGY	1 cut(s)	842
OliI	CACNNNNGTG	1 cut(s)	1184
PagI	TCATGA	2 cut(s)	301, 786
PceI	AGGCCT	1 cut(s)	240
PciI	ACATGT	1 cut(s)	838
PciSI	GCTCTTC	3 cut(s)	276, 515, 1147
PcsI	WCGNNNNNNNCGW	5 cut(s)	150, 498, 693, 989, 1029
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	38, 1020
PflFI	GACNNNGTC	2 cut(s)	497, 500
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	2 cut(s)	485, 515
PkrI	GCNGC	9 cut(s)	459, 527, 536, 539, 675, 693, 708, 831, 834
Ple19I	CGATCG	1 cut(s)	532
PleI	GAGTC	3 cut(s)	54, 773, 1002
PmaCI	CACGTG	3 cut(s)	104, 444, 637
PmlI	CACGTG	3 cut(s)	104, 444, 637
PpsI	GAGTC	3 cut(s)	54, 773, 1002
Ppu21I	YACGTR	3 cut(s)	104, 444, 637
PscI	ACATGT	1 cut(s)	838
PsiI	TTATAA	1 cut(s)	1279
Psp6I	CCWGG	1 cut(s)	1168
PspCI	CACGTG	3 cut(s)	104, 444, 637
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	1168
PspN4I	GGNNCC	3 cut(s)	148, 403, 937
PspPI	GGNCC	2 cut(s)	936, 1025
PstI	CTGCAG	1 cut(s)	834
PsuI	RGATCY	1 cut(s)	1052
PsyI	GACNNNGTC	2 cut(s)	497, 500
PvuI	CGATCG	1 cut(s)	532
PvuII	CAGCTG	2 cut(s)	673, 829
RgaI	GCGATCGC	1 cut(s)	532
RsaI	GTAC	3 cut(s)	148, 614, 725
RsaNI	GTAC	3 cut(s)	147, 613, 724
RseI	CAYNNNNRTG	1 cut(s)	1184
SalI	GTCGAC	2 cut(s)	107, 665
SapI	GCTCTTC	3 cut(s)	276, 515, 1147
SaqAI	TTAA	3 cut(s)	74, 905, 978
SatI	GCNGC	9 cut(s)	458, 526, 535, 538, 674, 692, 707, 830, 833
Sau3AI	GATC	6 cut(s)	80, 127, 529, 651, 681, 1052
Sau96I	GGNCC	2 cut(s)	936, 1025
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	3 cut(s)	55, 773, 1003
ScrFI	CCNGG	3 cut(s)	487, 517, 1170
SduI	GDGCHC	1 cut(s)	932
SfaAI	GCGATCGC	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	979
SfcI	CTRYAG	1 cut(s)	830
SgfI	GCGATCGC	1 cut(s)	532
SinI	GGWCC	1 cut(s)	1025
SmiMI	CAYNNNNRTG	1 cut(s)	1184
SmlI	CTYRAG	2 cut(s)	14, 884
SmoI	CTYRAG	2 cut(s)	14, 884
Sse9I	AATT	6 cut(s)	53, 962, 1079, 1091, 1137, 1244
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	9 cut(s)	98, 289, 458, 466, 525, 534, 537, 576, 630
SspMI	CTAG	2 cut(s)	236, 998
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	485, 515, 1168
StyI	CCWWGG	2 cut(s)	855, 1014
TaaI	ACNGT	5 cut(s)	34, 123, 621, 971, 1234
TaiI	ACGT	4 cut(s)	106, 446, 501, 639
TaqI	TCGA	6 cut(s)	108, 570, 666, 684, 844, 966
TaqII	GACCGA	1 cut(s)	1013
TasI	AATT	6 cut(s)	53, 962, 1079, 1091, 1137, 1244
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	4 cut(s)	460, 528, 537, 540
TfiI	GAWTC	2 cut(s)	38, 1020
Tru1I	TTAA	3 cut(s)	74, 905, 978
Tru9I	TTAA	3 cut(s)	74, 905, 978
TscAI	CASTG	1 cut(s)	976
TseFI	GTSAC	2 cut(s)	971, 1172
TseI	GCWGC	5 cut(s)	673, 691, 706, 829, 832
Tsp45I	GTSAC	2 cut(s)	971, 1172
TspDTI	ATGAA	7 cut(s)	17, 318, 573, 775, 839, 972, 1104
TspRI	CASTG	1 cut(s)	976
Tth111I	GACNNNGTC	2 cut(s)	497, 500
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	1025
XapI	RAATTY	2 cut(s)	1137, 1244
XbaI	TCTAGA	1 cut(s)	997
XceI	RCATGY	1 cut(s)	842
XmiI	GTMKAC	3 cut(s)	20, 108, 666
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	236, 998
ZraI	GACGTC	1 cut(s)	499
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.