Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8121786.1

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

149 .. 565

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8121786.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggccttccacggctcctttccggacacccaacaacccccccagctcgcccccacgtggctcaacgcgccgccgttccgctcccagaacagcttctcccggaacgacgacgtcgtcatatcgccgtccgggaagagcggcgatcgcggcggcgaagaggacgaggaggatgaactggagtgcgagagcgggaggttcaaagccgacatagtaggccaccctttgtacgaacagttggtctccgcacacgtgtcgtgcctgaggatcgccacgccggtcgaccagctgcccaagatcgacgagcagctcgtgcagtcgcagcgcgtggtggacaagtactcggcgatgagagccaacggcgatttccaagttatggatgagaaagaacttgactcgttcatggttagtaacttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

138

Amino Acids

15.4

Weight (kDa)

4.47

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AatII	GACGTC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccBSI	CCGCTC	3 cut(s)	81, 138, 189
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	3 cut(s)	68, 147, 324
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	7 cut(s)	71, 79, 138, 147, 150, 189, 243
AclWI	GGATC	1 cut(s)	272
AcvI	CACGTG	2 cut(s)	57, 250
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	227, 338
AfiI	CCNNNNNNNGG	2 cut(s)	57, 373
AflIII	ACRYGT	2 cut(s)	247, 249
AgsI	TTSAA	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	4 cut(s)	46, 93, 286, 307
AluI	AGCT	4 cut(s)	46, 93, 286, 307
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	2 cut(s)	3, 214
ApeKI	GCWGC	3 cut(s)	286, 304, 319
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AsiSI	GCGATCGC	1 cut(s)	145
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	70, 324
AsuC2I	CCSGG	2 cut(s)	100, 130
AxyI	CCTNAGG	1 cut(s)	260
BauI	CACGAG	1 cut(s)	308
BbrPI	CACGTG	2 cut(s)	57, 250
BbvI	GCAGC	3 cut(s)	273, 316, 331
BceAI	ACGGC	4 cut(s)	28, 58, 109, 373
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BcnI	CCSGG	2 cut(s)	100, 130
BcoDI	GTCTC	1 cut(s)	244
BisI	GCNGC	7 cut(s)	71, 139, 148, 151, 287, 305, 320
BlsI	GCNGC	7 cut(s)	72, 140, 149, 152, 288, 306, 321
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	100, 130
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	100, 130
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	100, 130
BsaAI	YACGTR	2 cut(s)	57, 250
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 373
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	180
Bse21I	CCTNAGG	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	175, 382
BseLI	CCNNNNNNNGG	2 cut(s)	57, 373
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	273, 316, 331
BseYI	CCCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	3 cut(s)	68, 147, 324
Bsh1285I	CGRYCG	2 cut(s)	145, 279
BshFI	GGCC	2 cut(s)	5, 216
BsiEI	CGRYCG	2 cut(s)	145, 279
BsiSI	CCGG	4 cut(s)	23, 100, 129, 275
BslI	CCNNNNNNNGG	2 cut(s)	57, 373
BsmAI	GTCTC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	5, 216
Bso31I	GGTCTC	1 cut(s)	244
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	142, 264, 294
BspACI	CCGC	7 cut(s)	71, 79, 138, 147, 150, 189, 243
BspANI	GGCC	2 cut(s)	5, 216
BspCNI	CTCAG	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	22
BspFNI	CGCG	3 cut(s)	68, 147, 324
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	244
BsrBI	CCGCTC	3 cut(s)	81, 138, 189
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	142, 264, 294
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	128, 150
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBAI	YACGTR	2 cut(s)	57, 250
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	175, 382
BstFNI	CGCG	3 cut(s)	68, 147, 324
BstHHI	GCGC	2 cut(s)	70, 324
BstKTI	GATC	3 cut(s)	145, 267, 297
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	3 cut(s)	142, 264, 294
BstMCI	CGRYCG	2 cut(s)	145, 279
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 144, 147, 310, 319, 350
BstSCI	CCNGG	2 cut(s)	98, 128
BstUI	CGCG	3 cut(s)	68, 147, 324
BstV1I	GCAGC	3 cut(s)	273, 316, 331
Bsu36I	CCTNAGG	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	5, 216
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	175, 382
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	2 cut(s)	70, 324
Cfr10I	RCCGGY	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	226, 337
CviAII	CATG	1 cut(s)	400
CviQI	GTAC	2 cut(s)	226, 337
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	144, 266, 296
DpnII	GATC	3 cut(s)	142, 264, 294
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	128, 150
EarI	CTCTTC	2 cut(s)	128, 150
Eco31I	GGTCTC	1 cut(s)	244
Eco72I	CACGTG	2 cut(s)	57, 250
Eco81I	CCTNAGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	403
FaiI	YATR	5 cut(s)	119, 209, 374, 401, 415
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	7 cut(s)	71, 139, 148, 151, 287, 305, 320
FokI	GGATG	2 cut(s)	182, 389
Fsp4HI	GCNGC	7 cut(s)	71, 139, 148, 151, 287, 305, 320
GlaI	GCGC	2 cut(s)	69, 323
GluI	GCNGC	7 cut(s)	71, 139, 148, 151, 287, 305, 320
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	5, 216
HapII	CCGG	4 cut(s)	23, 100, 129, 275
HhaI	GCGC	2 cut(s)	70, 324
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	2 cut(s)	68, 322
HinP1I	GCGC	2 cut(s)	68, 322
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	4 cut(s)	23, 100, 129, 275
Hpy166II	GTNNAC	2 cut(s)	280, 331
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	2 cut(s)	280, 331
Hpy99I	CGWCG	4 cut(s)	110, 113, 116, 302
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	3 cut(s)	56, 111, 249
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 144, 147, 310, 319, 350
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	3 cut(s)	56, 111, 249
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	2 cut(s)	68, 322
Kpn2I	TCCGGA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	142, 264, 294
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	20, 86
LpnPI	CCDG	9 cut(s)	36, 56, 98, 113, 142, 161, 272, 288, 296
Lsp1109I	GCAGC	3 cut(s)	273, 316, 331
MaeII	ACGT	3 cut(s)	56, 111, 249
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	3 cut(s)	144, 266, 296
MbiI	CCGCTC	3 cut(s)	81, 138, 189
MboI	GATC	3 cut(s)	142, 264, 294
MboII	GAAGA	2 cut(s)	145, 167
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	151, 157, 160, 186, 255
MroI	TCCGGA	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	4 cut(s)	23, 100, 129, 275
MspR9I	CCNGG	2 cut(s)	100, 130
MvnI	CGCG	3 cut(s)	68, 147, 324
MwoI	GCNNNNNNNGC	6 cut(s)	67, 144, 147, 310, 319, 350
NciI	CCSGG	2 cut(s)	100, 130
NdeII	GATC	3 cut(s)	142, 264, 294
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 306
PdmI	GAANNNNTTC	1 cut(s)	92
PflFI	GACNNNGTC	2 cut(s)	110, 113
PflMI	CCANNNNNTGG	1 cut(s)	373
PfoI	TCCNGGA	2 cut(s)	98, 128
PkrI	GCNGC	7 cut(s)	72, 140, 149, 152, 288, 306, 321
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	1 cut(s)	386
PmaCI	CACGTG	2 cut(s)	57, 250
PmlI	CACGTG	2 cut(s)	57, 250
PpsI	GAGTC	1 cut(s)	386
Ppu21I	YACGTR	2 cut(s)	57, 250
PspCI	CACGTG	2 cut(s)	57, 250
PspFI	CCCAGC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	16
PsyI	GACNNNGTC	2 cut(s)	110, 113
PvuI	CGATCG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	286
RgaI	GCGATCGC	1 cut(s)	145
RsaI	GTAC	2 cut(s)	227, 338
RsaNI	GTAC	2 cut(s)	226, 337
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	128
SatI	GCNGC	7 cut(s)	71, 139, 148, 151, 287, 305, 320
Sau3AI	GATC	3 cut(s)	142, 264, 294
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	100, 130
SetI	ASST	8 cut(s)	48, 59, 95, 114, 197, 252, 288, 309
SfaAI	GCGATCGC	1 cut(s)	145
SgfI	GCGATCGC	1 cut(s)	145
SsiI	CCGC	7 cut(s)	71, 79, 138, 147, 150, 189, 243
StyD4I	CCNGG	2 cut(s)	98, 128
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	3 cut(s)	59, 114, 252
TaqI	TCGA	2 cut(s)	279, 297
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	4 cut(s)	73, 141, 150, 153
TseI	GCWGC	3 cut(s)	286, 304, 319
TspDTI	ATGAA	2 cut(s)	186, 388
Tth111I	GACNNNGTC	2 cut(s)	110, 113
Van91I	CCANNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	92
ZraI	GACGTC	1 cut(s)	112
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.