MD02G1012900.v1.1

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
821764 .. 824900
3137 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1012900.v1.1.491

Sequence Viewer

Length: 1083 bp
ATGGCGTTTCATCACCAGCAGCAGCAGACCCCTCACGAAATGGCGTTCCACTCCTTCGCGGAGGACCAGCCGCCGCTCTCCGGAGCTCTGACGTGGCTCAACAACGCAGCTTTCCGCCAGCAGAACACCAGCTTCGGCGGCCTCCACGACGCGGGGAGAAACGACGACGTGGTCATATCGCCGTCCGGGAAGAGCAGCAGCTGCAGCGATCGGAACCGGAGGGAGATAAGCGGTTACGACGGCGGAGAAGAGGAGGAGGGGGAAGACGAGCTGGAGTGCGAGAGCGCGAGGTTCAAGGCCGACATCGTGGGACATCCTCTGTATGAGCAGCTTGTGTCGGCGCACGTGTCGTGCTTGAGGATCGCTACGCCGGTCGATCAGCTGCCAAGGATCGATGAGAAGCTCTTGCAATCGCAGCGCGTGGTCGACAACTACTCGGCGCTCCGAGCCAATGGGGATGTTGGAGTCATGGATGAGAAAGAACTTGATTTGTTCATGACGAATTATGTTCTTTTGCTTTGCTCCTTCAAAGAACAACTGCAGCAGCATGTCCGAGTTCACGCAATGGAAGCAGTGATGGCTTGTTGGGAGCTTGATCAGTCTCTGCAAAGCTTAACAGGTGTATCCACGGGTGAAGGAACGGGTGCTACCATGTCCGATGATGATGACCAGTTAGATAGCGACATCAACTCCTATGATGGAAGTCTGGACGGGCCAGACACCATGGGATTTGGCCCTCTTGTTCCGACTGAAAGTGAGAGGTCCTTAATGGAGCGCGTAAGGCAGGAACTGAAGCATGAACTGGAACAGGGTTACAAGGAAAAGATCGTCGACATTAGAGAGGAAATTCTGCGCAAGAGAAGAGCGGGGAAACTGCCAGGTGACACAACTTCTGTCTTAAAATCTTGGTGGCAATCGCATTCCAAGTGGCCTTACCCGACAGAGGAAGACAAGGCCAGATTGGTGCAGGAAACAGGCTTGCAGTTGAAACAGATCAATAACTGGTTTATTAATCAAAGAAAAAGGAATTGGCACAGCAACATTTCATCGACTTCCGTTCTCAAGAGCAAACGCAAGAGGTAG

Protein Analysis

361

Amino Acids

40.81

Weight (kDa)

5.19

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 98 - 137 1.4e-16 KNOX1 domain
KNOX2 PF03791 157 - 206 1.3e-14 KNOX2 domain
Homeobox_KN PF05920 303 - 342 7.5e-19 Homeobox KN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 854
AccBSI CCGCTC 2 cut(s) 76, 866
AccI GTMKAC 2 cut(s) 426, 831
AccII CGCG 5 cut(s) 59, 152, 287, 420, 777
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 9 cut(s) 59, 71, 74, 115, 138, 152, 231, 243, 866
AclWI GGATC 2 cut(s) 368, 398
AcsI RAATTY 1 cut(s) 846
AcuI CTGAAG 1 cut(s) 812
AcvI CACGTG 1 cut(s) 346
AfiI CCNNNNNNNGG 3 cut(s) 80, 151, 943
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 3 cut(s) 295, 529, 988
AjiI CACGTC 2 cut(s) 93, 169
AjnI CCWGG 1 cut(s) 877
AjuI GAANNNNNNNTTGG 2 cut(s) 1012, 1044
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 2 cut(s) 368, 398
AlwNI CAGNNNCTG 3 cut(s) 201, 604, 790
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 6 cut(s) 139, 297, 713, 733, 929, 954
ApoI RAATTY 1 cut(s) 846
AseI ATTAAT 1 cut(s) 1011
AspLEI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
AspS9I GGNCC 4 cut(s) 64, 713, 734, 762
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 3 cut(s) 5, 644, 893
AvaII GGWCC 2 cut(s) 64, 762
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BanII GRGCYC 1 cut(s) 88
BbrPI CACGTG 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 270, 954
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 2 cut(s) 571, 692
BceAI ACGGC 2 cut(s) 166, 256
BciT130I CCWGG 1 cut(s) 879
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 606
BfmI CTRYAG 2 cut(s) 202, 539
BfoI RGCGCY 1 cut(s) 443
BfuI GTATCC 1 cut(s) 634
Bme1390I CCNGG 2 cut(s) 187, 879
Bme18I GGWCC 2 cut(s) 64, 762
BmgBI CACGTC 2 cut(s) 93, 169
BmgT120I GGNCC 4 cut(s) 64, 713, 734, 762
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 187, 879
BpiI GAAGAC 2 cut(s) 270, 954
BpmI CTGGAG 1 cut(s) 293
BpuEI CTTGAG 2 cut(s) 376, 1046
BpuMI CCSGG 1 cut(s) 187
Bsa29I ATCGAT 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 346
BsaJI CCNNGG 3 cut(s) 386, 627, 723
BsaWI WCCGGW 2 cut(s) 80, 216
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 151, 943
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 3 cut(s) 670, 807, 1007
Bse3DI GCAATG 1 cut(s) 570
BseAI TCCGGA 1 cut(s) 80
BseBI CCWGG 1 cut(s) 879
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 386, 627, 723
BseGI GGATG 3 cut(s) 313, 463, 478
BseLI CCNNNNNNNGG 3 cut(s) 80, 151, 943
BseMI GCAATG 1 cut(s) 570
BseNI ACTGG 3 cut(s) 670, 807, 1007
BseRI GAGGAG 2 cut(s) 266, 269
BsgI GTGCAG 1 cut(s) 986
Bsh1236I CGCG 5 cut(s) 59, 152, 287, 420, 777
Bsh1285I CGRYCG 2 cut(s) 211, 375
BshFI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
BshVI ATCGAT 1 cut(s) 393
BsiEI CGRYCG 2 cut(s) 211, 375
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 4 cut(s) 81, 186, 217, 371
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 80, 151, 943
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
Bsp1286I GDGCHC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 9 cut(s) 59, 71, 74, 115, 138, 152, 231, 243, 866
BspANI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
BspDI ATCGAT 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 5 cut(s) 59, 152, 287, 420, 777
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 215
BspMAI CTGCAG 2 cut(s) 206, 543
BspPI GGATC 2 cut(s) 368, 398
BspQI GCTCTTC 2 cut(s) 185, 856
BsrBI CCGCTC 2 cut(s) 76, 866
BsrDI GCAATG 1 cut(s) 570
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 3 cut(s) 670, 807, 1007
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 386, 627, 723
BssMI GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
BssT1I CCWWGG 2 cut(s) 386, 723
Bst2UI CCWGG 1 cut(s) 879
Bst6I CTCTTC 3 cut(s) 185, 243, 856
BstAPI GCANNNNNTGC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 119, 980
BstDSI CCRYGG 2 cut(s) 627, 723
BstF5I GGATG 3 cut(s) 313, 463, 478
BstFNI CGCG 5 cut(s) 59, 152, 287, 420, 777
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
BstKTI GATC 7 cut(s) 211, 363, 379, 393, 598, 828, 996
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
BstMCI CGRYCG 2 cut(s) 211, 375
BstMWI GCNNNNNNNGC 8 cut(s) 138, 201, 204, 415, 446, 569, 578, 781
BstNI CCWGG 1 cut(s) 879
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 2 cut(s) 185, 877
BstSFI CTRYAG 2 cut(s) 202, 539
BstUI CGCG 5 cut(s) 59, 152, 287, 420, 777
BstV2I GAAGAC 2 cut(s) 270, 954
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
BsuTUI ATCGAT 1 cut(s) 393
BtgI CCRYGG 2 cut(s) 627, 723
BtrI CACGTC 2 cut(s) 93, 169
BtsCI GGATG 3 cut(s) 313, 463, 478
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 119, 980
CaiI CAGNNNCTG 3 cut(s) 201, 604, 790
CciI TCATGA 1 cut(s) 495
CfoI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 64, 713, 734, 762
ClaI ATCGAT 1 cut(s) 393
CseI GACGC 1 cut(s) 158
CviAII CATG 6 cut(s) 469, 496, 548, 652, 724, 797
DpnI GATC 7 cut(s) 210, 362, 378, 392, 597, 827, 995
DpnII GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 3 cut(s) 185, 243, 856
EarI CTCTTC 3 cut(s) 185, 243, 856
EciI GGCGGA 2 cut(s) 104, 258
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 2 cut(s) 386, 723
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 64, 762
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 812
Eco72I CACGTG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 762
EcoRII CCWGG 1 cut(s) 877
EcoT14I CCWWGG 2 cut(s) 386, 723
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 2 cut(s) 386, 723
FaeI CATG 6 cut(s) 472, 499, 551, 655, 727, 800
FaqI GGGAC 1 cut(s) 324
FatI CATG 6 cut(s) 468, 495, 547, 651, 723, 796
FauI CCCGC 2 cut(s) 145, 859
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 2 cut(s) 426, 831
FokI GGATG 3 cut(s) 300, 470, 485
FriOI GRGCYC 1 cut(s) 88
FspI TGCGCA 1 cut(s) 854
GlaI GCGC 6 cut(s) 286, 342, 419, 441, 776, 854
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 6 cut(s) 141, 299, 715, 735, 931, 956
HapII CCGG 4 cut(s) 81, 186, 217, 371
HgaI GACGC 1 cut(s) 158
HhaI GCGC 6 cut(s) 287, 343, 420, 442, 777, 855
Hin1II CATG 6 cut(s) 472, 499, 551, 655, 727, 800
Hin6I GCGC 6 cut(s) 285, 341, 418, 440, 775, 853
HinP1I GCGC 6 cut(s) 285, 341, 418, 440, 775, 853
HincII GTYRAC 2 cut(s) 427, 832
HindII GTYRAC 2 cut(s) 427, 832
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 1 cut(s) 465
HpaII CCGG 4 cut(s) 81, 186, 217, 371
HphI GGTGA 3 cut(s) 5, 644, 893
Hpy166II GTNNAC 3 cut(s) 427, 559, 832
Hpy188I TCNGA 6 cut(s) 90, 213, 446, 554, 658, 747
Hpy188III TCNNGA 5 cut(s) 35, 81, 496, 707, 1063
Hpy8I GTNNAC 3 cut(s) 427, 559, 832
Hpy99I CGWCG 5 cut(s) 152, 167, 170, 242, 833
HpyAV CCTTC 3 cut(s) 64, 535, 629
HpyCH4IV ACGT 3 cut(s) 92, 168, 345
HpyCH4V TGCA 6 cut(s) 204, 409, 541, 607, 967, 982
HpyF10VI GCNNNNNNNGC 8 cut(s) 138, 201, 204, 415, 446, 569, 578, 781
HpySE526I ACGT 3 cut(s) 92, 168, 345
Hsp92II CATG 6 cut(s) 472, 499, 551, 655, 727, 800
HspAI GCGC 6 cut(s) 285, 341, 418, 440, 775, 853
Kpn2I TCCGGA 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
LguI GCTCTTC 2 cut(s) 185, 856
LmnI GCTCC 5 cut(s) 83, 447, 527, 589, 772
MaeII ACGT 3 cut(s) 92, 168, 345
MaeIII GTNAC 3 cut(s) 233, 812, 881
MalI GATC 7 cut(s) 210, 362, 378, 392, 597, 827, 995
MbiI CCGCTC 2 cut(s) 76, 866
MboI GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
MboII GAAGA 5 cut(s) 202, 260, 275, 873, 959
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 3 cut(s) 502, 846, 1027
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 2 cut(s) 442, 770
MroI TCCGGA 1 cut(s) 80
MseI TTAA 4 cut(s) 614, 767, 899, 1011
MspA1I CMGCKG 2 cut(s) 201, 382
MspI CCGG 4 cut(s) 81, 186, 217, 371
MspR9I CCNGG 2 cut(s) 187, 879
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 879
MvnI CGCG 5 cut(s) 59, 152, 287, 420, 777
MwoI GCNNNNNNNGC 8 cut(s) 138, 201, 204, 415, 446, 569, 578, 781
NciI CCSGG 1 cut(s) 187
NcoI CCATGG 1 cut(s) 723
NdeII GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
NlaIII CATG 6 cut(s) 472, 499, 551, 655, 727, 800
NlaIV GGNNCC 1 cut(s) 215
NmeAIII GCCGAG 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 881
NsbI TGCGCA 1 cut(s) 854
NspI RCATGY 1 cut(s) 551
PagI TCATGA 1 cut(s) 495
PciSI GCTCTTC 2 cut(s) 185, 856
PctI GAATGC 1 cut(s) 919
PflFI GACNNNGTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 185
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 473
PmaCI CACGTG 1 cut(s) 346
PmlI CACGTG 1 cut(s) 346
PpsI GAGTC 1 cut(s) 473
Ppu21I YACGTR 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 762
PshBI ATTAAT 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 877
PspCI CACGTG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 4 cut(s) 64, 713, 734, 762
PspPPI RGGWCCY 1 cut(s) 762
PsrI GAACNNNNNNTAC 2 cut(s) 631, 663
PstI CTGCAG 2 cut(s) 206, 543
PstNI CAGNNNCTG 3 cut(s) 201, 604, 790
PsyI GACNNNGTC 1 cut(s) 170
PvuI CGATCG 1 cut(s) 211
PvuII CAGCTG 2 cut(s) 201, 382
SacI GAGCTC 1 cut(s) 88
SalI GTCGAC 2 cut(s) 425, 830
SapI GCTCTTC 2 cut(s) 185, 856
SaqAI TTAA 4 cut(s) 614, 767, 899, 1011
Sau3AI GATC 7 cut(s) 208, 360, 376, 390, 595, 825, 993
Sau96I GGNCC 4 cut(s) 64, 713, 734, 762
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 2 cut(s) 187, 879
SduI GDGCHC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 202, 539
SinI GGWCC 2 cut(s) 64, 762
SmlI CTYRAG 2 cut(s) 355, 1061
SmoI CTYRAG 2 cut(s) 355, 1061
Sse9I AATT 3 cut(s) 502, 846, 1027
SsiI CCGC 9 cut(s) 59, 71, 74, 115, 138, 152, 231, 243, 866
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 185, 877
StyI CCWWGG 2 cut(s) 386, 723
TaiI ACGT 3 cut(s) 95, 171, 348
TaqI TCGA 5 cut(s) 375, 393, 426, 831, 1049
TasI AATT 3 cut(s) 502, 846, 1027
TauI GCSGC 3 cut(s) 73, 76, 141
Tru1I TTAA 4 cut(s) 614, 767, 899, 1011
Tru9I TTAA 4 cut(s) 614, 767, 899, 1011
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 1 cut(s) 881
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 3 cut(s) 484, 813, 1035
TspGWI ACGGA 1 cut(s) 1045
TspRI CASTG 1 cut(s) 579
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 64, 762
VspI ATTAAT 1 cut(s) 1011
XapI RAATTY 1 cut(s) 846
XceI RCATGY 1 cut(s) 551
XmiI GTMKAC 2 cut(s) 426, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.