Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

1709360 .. 1711876

Gene Structure 2517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46217

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTCATCTCCGCCACGTGTCGACCTATCTCCACCGTCCGATCCCCCCCACCCTCCTCGGTACCGGCGTCAGCCAGTCATCATCATCATCACTCTCAACTCAGAAACCAAAGTCGTCCCTCTCCCAAAAAAGAGCTTTGGGTTTCTCTCTAGCCCCCCCCTCTCTGCTCTTCTCGCTTTTCTGAACCGCGCTTTCCCTCATGAACTAAAAAAGTGCTTTTCTTTTCAGCCGAGAAAAATCTCAAAACCTCAAATGGCTTTTCACCACCACCAAACCCCTCACGAAATGGCCTTCCACGGCTCCTTTCCGGACACCCAACAACCCCCCCAGCTCGCCCCCACGTGGCTCAACGCGCCGCCGTTCCGCTCCCAGAACAGCTTCTCCCGGAACGACGACGTCGTCATATCGCCGTCCGGGAAGAGCGGCGATCGCGGCGGCGAAGAGGACGAGGAGGATGAACTGGAGTGCGAGAGCGGGAGGTTCAAAGCCGACATAGTAGGCCACCCTTTGTACGAACAGTTGGTCTCCGCACACGTGTCGTGCCTGAGGATCGCCACGCCGGTCGACCAGCTGCCCAAGATCGACGAGCAGCTCGTGCAGTCGCAGCGCGTGGTGGACAAGTACTCGGCGATGAGAGCCAACGGCGATTTCCAAGTTATGGATGAGAAAGAACTCGACTCGTTCATGACAAACTATGTTCTTTTGCTTTGTTCCTTCAAAGAACAACTGCAGCAACATGTTCGAGTTCATGCCATGGAGGCAGTCATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAAGCTTAACAGGTGTATCAACGGCTGAGGGCACAGGGGCCACAATGTCCGATGATGATGAACAATTCGACAGTGACATTAACTCGTATGATGCGAGTCTAGATGGACATGACACCATGGGATTCGGTCCTCTCGTGCCAACTGAAAGTGAGAGATCTCTAATGGAGCGCGTAAGGCAAGAATTGAAGCATGAATTGAAACAGGGTTACAAGGAAAAGATTGTCGACATTCGTGAGGAAATTCTGCGTAAGAGAAGAGCAGGGAAACTTCCAGGTGACACCACTTCTGTGTTGAAAGCTTGGTGGCAATCGCATTCCAAATGGCCTTACCCAACTGAGGAAGACAAAGCAAGGCTAGTTCAGGAAACAGGGTTGCAATTGAAGCAGATCAATAACTGGTTTATCAATCAAAGAAAAAGGAACTGGCACAGCAACCTCTCCACAACTTCTGTTTTGAAGAGCAAGCGCAAGAGTAATGCAGGTGATGGCAACACTCAACAATTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

434

Amino Acids

49.33

Weight (kDa)

6.33

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	161 - 201	4e-17	KNOX1 domain
KNOX2	PF03791	219 - 269	6.8e-16	KNOX2 domain
ELK	PF03789	326 - 347	7.5e-07	ELK domain
Homeobox_KN	PF05920	366 - 405	9.6e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1265
AasI	GACNNNNNNGTC	1 cut(s)	398
AatII	GACGTC	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	1265
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccBSI	CCGCTC	3 cut(s)	366, 423, 474
AccI	GTMKAC	3 cut(s)	21, 564, 1020
AccII	CGCG	5 cut(s)	189, 353, 432, 609, 966
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	9 cut(s)	11, 187, 356, 364, 423, 432, 435, 474, 528
AclWI	GGATC	2 cut(s)	35, 557
AcsI	RAATTY	1 cut(s)	1035
AcvI	CACGTG	3 cut(s)	17, 342, 535
AcyI	GRCGYC	2 cut(s)	67, 396
AfaI	GTAC	3 cut(s)	62, 512, 623
AfiI	CCNNNNNNNGG	3 cut(s)	342, 658, 1132
AflIII	ACRYGT	4 cut(s)	16, 532, 534, 736
AgsI	TTSAA	8 cut(s)	484, 718, 982, 994, 1090, 1177, 1252, 1300
AjnI	CCWGG	1 cut(s)	1066
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AleI	CACNNNNGTG	1 cut(s)	1082
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	8 cut(s)	135, 331, 378, 571, 592, 781, 801, 1094
AluI	AGCT	8 cut(s)	135, 331, 378, 571, 592, 781, 801, 1094
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	35, 557
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	4 cut(s)	288, 499, 834, 1118
ApeKI	GCWGC	4 cut(s)	571, 589, 604, 730
ApoI	RAATTY	1 cut(s)	1035
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AsiSI	GCGATCGC	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	377
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	5 cut(s)	191, 355, 609, 966, 1263
AspS9I	GGNCC	2 cut(s)	834, 923
AsuC2I	CCSGG	2 cut(s)	385, 415
AsuHPI	GGTGA	3 cut(s)	254, 1082, 1289
AvaII	GGWCC	1 cut(s)	923
AxyI	CCTNAGG	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	830
BaeI	ACNNNNGTAYC	4 cut(s)	52, 85, 795, 828
BanI	GGYRCC	1 cut(s)	60
BauI	CACGAG	2 cut(s)	593, 929
BbrPI	CACGTG	3 cut(s)	17, 342, 535
BbsI	GAAGAC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	822
BbvI	GCAGC	4 cut(s)	558, 601, 616, 742
BccI	CCATC	2 cut(s)	893, 1274
BceAI	ACGGC	5 cut(s)	313, 343, 394, 658, 834
BcgI	CGANNNNNNTGC	4 cut(s)	519, 553, 722, 756
BciT130I	CCWGG	1 cut(s)	1068
BcnI	CCSGG	2 cut(s)	385, 415
BcoDI	GTCTC	1 cut(s)	529
BfaI	CTAG	3 cut(s)	150, 896, 1151
BfmI	CTRYAG	1 cut(s)	728
BfuAI	ACCTGC	1 cut(s)	1265
BglI	GCCNNNNNGGC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	950
BisI	GCNGC	8 cut(s)	356, 424, 433, 436, 572, 590, 605, 731
BlsI	GCNGC	8 cut(s)	357, 425, 434, 437, 573, 591, 606, 732
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	3 cut(s)	385, 415, 1068
Bme18I	GGWCC	1 cut(s)	923
BmgT120I	GGNCC	2 cut(s)	834, 923
BmiI	GGNNCC	3 cut(s)	62, 301, 835
BmrFI	CCNGG	3 cut(s)	385, 415, 1068
BmsI	GCATC	1 cut(s)	877
BpiI	GAAGAC	1 cut(s)	1143
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	803
BpuMI	CCSGG	2 cut(s)	385, 415
BsaAI	YACGTR	3 cut(s)	17, 342, 535
BsaHI	GRCGYC	2 cut(s)	67, 396
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	4 cut(s)	56, 295, 753, 912
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 658, 1132
Bse118I	RCCGGY	2 cut(s)	63, 559
Bse1I	ACTGG	4 cut(s)	74, 465, 1196, 1223
Bse21I	CCTNAGG	1 cut(s)	545
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	1068
BseDI	CCNNGG	4 cut(s)	56, 295, 753, 912
BseGI	GGATG	2 cut(s)	460, 667
BseLI	CCNNNNNNNGG	3 cut(s)	342, 658, 1132
BseMII	CTCAG	4 cut(s)	114, 536, 813, 1122
BseNI	ACTGG	4 cut(s)	74, 465, 1196, 1223
BseRI	GAGGAG	2 cut(s)	45, 464
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	4 cut(s)	558, 601, 616, 742
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	5 cut(s)	189, 353, 432, 609, 966
Bsh1285I	CGRYCG	2 cut(s)	430, 564
BshFI	GGCC	4 cut(s)	290, 501, 836, 1120
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	2 cut(s)	430, 564
BsiSI	CCGG	5 cut(s)	64, 308, 385, 414, 560
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	342, 658, 1132
BsmAI	GTCTC	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	4 cut(s)	290, 501, 836, 1120
Bso31I	GGTCTC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
Bsp19I	CCATGG	2 cut(s)	753, 912
BspACI	CCGC	9 cut(s)	11, 187, 356, 364, 423, 432, 435, 474, 528
BspANI	GGCC	4 cut(s)	290, 501, 836, 1120
BspCNI	CTCAG	4 cut(s)	113, 537, 814, 1123
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	5 cut(s)	189, 353, 432, 609, 966
BspHI	TCATGA	2 cut(s)	199, 684
BspLI	GGNNCC	3 cut(s)	62, 301, 835
BspMAI	CTGCAG	1 cut(s)	732
BspMI	ACCTGC	1 cut(s)	1265
BspPI	GGATC	2 cut(s)	35, 557
BspQI	GCTCTTC	4 cut(s)	174, 413, 1045, 1247
BspT107I	GGYRCC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	529
BsrBI	CCGCTC	3 cut(s)	366, 423, 474
BsrFI	RCCGGY	2 cut(s)	63, 559
BsrI	ACTGG	4 cut(s)	74, 465, 1196, 1223
BssAI	RCCGGY	2 cut(s)	63, 559
BssECI	CCNNGG	4 cut(s)	56, 295, 753, 912
BssMI	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
BssNI	GRCGYC	2 cut(s)	67, 396
BssSI	CACGAG	2 cut(s)	593, 929
BssT1I	CCWWGG	2 cut(s)	753, 912
Bst2BI	CACGAG	2 cut(s)	593, 929
Bst2UI	CCWGG	1 cut(s)	1068
Bst4CI	ACNGT	3 cut(s)	36, 519, 869
Bst6I	CTCTTC	5 cut(s)	174, 413, 435, 1045, 1247
BstACI	GRCGYC	2 cut(s)	67, 396
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstBAI	YACGTR	3 cut(s)	17, 342, 535
BstC8I	GCNNGC	2 cut(s)	333, 1259
BstDEI	CTNAG	4 cut(s)	100, 545, 822, 1131
BstDSI	CCRYGG	3 cut(s)	295, 753, 912
BstF5I	GGATG	2 cut(s)	460, 667
BstFNI	CGCG	5 cut(s)	189, 353, 432, 609, 966
BstHHI	GCGC	5 cut(s)	191, 355, 609, 966, 1263
BstKTI	GATC	6 cut(s)	43, 430, 552, 582, 953, 1185
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
BstMCI	CGRYCG	2 cut(s)	430, 564
BstNI	CCWGG	1 cut(s)	1068
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	3 cut(s)	383, 413, 1066
BstSFI	CTRYAG	1 cut(s)	728
BstSLI	GKGCMC	1 cut(s)	830
BstUI	CGCG	5 cut(s)	189, 353, 432, 609, 966
BstV1I	GCAGC	4 cut(s)	558, 601, 616, 742
BstV2I	GAAGAC	1 cut(s)	1143
BstX2I	RGATCY	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	950
Bsu36I	CCTNAGG	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	290, 501, 836, 1120
BtgI	CCRYGG	3 cut(s)	295, 753, 912
BtgZI	GCGATG	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	460, 667
BtsIMutI	CAGTG	1 cut(s)	874
BveI	ACCTGC	1 cut(s)	1265
Cac8I	GCNNGC	2 cut(s)	333, 1259
CciI	TCATGA	2 cut(s)	199, 684
CfoI	GCGC	5 cut(s)	191, 355, 609, 966, 1263
Cfr10I	RCCGGY	2 cut(s)	63, 559
Cfr13I	GGNCC	2 cut(s)	834, 923
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	61, 511, 622
CviAII	CATG	9 cut(s)	200, 685, 737, 749, 754, 766, 905, 913, 986
CviQI	GTAC	3 cut(s)	61, 511, 622
DdeI	CTNAG	4 cut(s)	100, 545, 822, 1131
DpnI	GATC	6 cut(s)	42, 429, 551, 581, 952, 1184
DpnII	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	5 cut(s)	174, 413, 435, 1045, 1247
EarI	CTCTTC	5 cut(s)	174, 413, 435, 1045, 1247
Eco130I	CCWWGG	2 cut(s)	753, 912
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	923
Eco72I	CACGTG	3 cut(s)	17, 342, 535
Eco81I	CCTNAGG	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	1066
EcoT14I	CCWWGG	2 cut(s)	753, 912
ErhI	CCWWGG	2 cut(s)	753, 912
FaeI	CATG	9 cut(s)	203, 688, 740, 752, 757, 769, 908, 916, 989
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	9 cut(s)	199, 684, 736, 748, 753, 765, 904, 912, 985
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	3 cut(s)	21, 564, 1020
Fnu4HI	GCNGC	8 cut(s)	356, 424, 433, 436, 572, 590, 605, 731
FokI	GGATG	2 cut(s)	467, 674
Fsp4HI	GCNGC	8 cut(s)	356, 424, 433, 436, 572, 590, 605, 731
FspBI	CTAG	3 cut(s)	150, 896, 1151
GlaI	GCGC	5 cut(s)	190, 354, 608, 965, 1262
GluI	GCNGC	8 cut(s)	356, 424, 433, 436, 572, 590, 605, 731
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	4 cut(s)	290, 501, 836, 1120
HapII	CCGG	5 cut(s)	64, 308, 385, 414, 560
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	5 cut(s)	191, 355, 609, 966, 1263
Hin1I	GRCGYC	2 cut(s)	67, 396
Hin1II	CATG	9 cut(s)	203, 688, 740, 752, 757, 769, 908, 916, 989
Hin6I	GCGC	5 cut(s)	189, 353, 607, 964, 1261
HinP1I	GCGC	5 cut(s)	189, 353, 607, 964, 1261
HincII	GTYRAC	3 cut(s)	22, 565, 1021
HindII	GTYRAC	3 cut(s)	22, 565, 1021
HindIII	AAGCTT	2 cut(s)	799, 1092
HinfI	GANTC	3 cut(s)	677, 892, 918
HpaII	CCGG	5 cut(s)	64, 308, 385, 414, 560
HphI	GGTGA	3 cut(s)	254, 1082, 1289
Hpy166II	GTNNAC	4 cut(s)	22, 565, 616, 1021
Hpy188I	TCNGA	4 cut(s)	40, 103, 183, 847
Hpy188III	TCNNGA	7 cut(s)	200, 281, 308, 685, 896, 1028, 1157
Hpy8I	GTNNAC	4 cut(s)	22, 565, 616, 1021
Hpy99I	CGWCG	4 cut(s)	395, 398, 401, 587
HpyAV	CCTTC	2 cut(s)	301, 724
HpyCH4III	ACNGT	3 cut(s)	36, 519, 869
HpyCH4IV	ACGT	4 cut(s)	16, 341, 396, 534
HpyCH4V	TGCA	4 cut(s)	598, 730, 1171, 1274
HpyF3I	CTNAG	4 cut(s)	100, 545, 822, 1131
HpySE526I	ACGT	4 cut(s)	16, 341, 396, 534
Hsp92I	GRCGYC	2 cut(s)	67, 396
Hsp92II	CATG	9 cut(s)	203, 688, 740, 752, 757, 769, 908, 916, 989
HspAI	GCGC	5 cut(s)	189, 353, 607, 964, 1261
Kpn2I	TCCGGA	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
LguI	GCTCTTC	4 cut(s)	174, 413, 1045, 1247
LmnI	GCTCC	4 cut(s)	305, 371, 778, 961
Lsp1109I	GCAGC	4 cut(s)	558, 601, 616, 742
LweI	GCATC	1 cut(s)	877
MaeI	CTAG	3 cut(s)	150, 896, 1151
MaeII	ACGT	4 cut(s)	16, 341, 396, 534
MaeIII	GTNAC	3 cut(s)	869, 1001, 1070
MalI	GATC	6 cut(s)	42, 429, 551, 581, 952, 1184
MbiI	CCGCTC	3 cut(s)	366, 423, 474
MboI	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
MboII	GAAGA	6 cut(s)	161, 430, 452, 1062, 1148, 1264
MfeI	CAATTG	1 cut(s)	1172
MflI	RGATCY	1 cut(s)	950
MhlI	GDGCHC	1 cut(s)	830
MluCI	AATT	6 cut(s)	860, 977, 989, 1035, 1172, 1295
MlyI	GAGTC	2 cut(s)	671, 901
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	803, 876
MslI	CAYNNNNRTG	1 cut(s)	1082
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	5 cut(s)	64, 308, 385, 414, 560
MspR9I	CCNGG	3 cut(s)	385, 415, 1068
MunI	CAATTG	1 cut(s)	1172
Mva1269I	GAATGC	1 cut(s)	1108
MvaI	CCWGG	1 cut(s)	1068
MvnI	CGCG	5 cut(s)	189, 353, 432, 609, 966
NciI	CCSGG	2 cut(s)	385, 415
NcoI	CCATGG	2 cut(s)	753, 912
NdeII	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
NlaIII	CATG	9 cut(s)	203, 688, 740, 752, 757, 769, 908, 916, 989
NlaIV	GGNNCC	3 cut(s)	62, 301, 835
NmeAIII	GCCGAG	2 cut(s)	255, 605
NmuCI	GTSAC	2 cut(s)	869, 1070
NspI	RCATGY	1 cut(s)	740
OliI	CACNNNNGTG	1 cut(s)	1082
PagI	TCATGA	2 cut(s)	199, 684
PaqCI	CACCTGC	1 cut(s)	1265
PciI	ACATGT	1 cut(s)	736
PciSI	GCTCTTC	4 cut(s)	174, 413, 1045, 1247
PcsI	WCGNNNNNNNCGW	5 cut(s)	64, 396, 591, 887, 927
PctI	GAATGC	1 cut(s)	1108
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	918
PflFI	GACNNNGTC	2 cut(s)	395, 398
PflMI	CCANNNNNTGG	1 cut(s)	658
PfoI	TCCNGGA	2 cut(s)	383, 413
PkrI	GCNGC	8 cut(s)	357, 425, 434, 437, 573, 591, 606, 732
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	2 cut(s)	671, 900
PmaCI	CACGTG	3 cut(s)	17, 342, 535
PmlI	CACGTG	3 cut(s)	17, 342, 535
PpsI	GAGTC	2 cut(s)	671, 900
Ppu21I	YACGTR	3 cut(s)	17, 342, 535
PscI	ACATGT	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	1066
PspCI	CACGTG	3 cut(s)	17, 342, 535
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	1066
PspN4I	GGNNCC	3 cut(s)	62, 301, 835
PspPI	GGNCC	2 cut(s)	834, 923
PstI	CTGCAG	1 cut(s)	732
PsuI	RGATCY	1 cut(s)	950
PsyI	GACNNNGTC	2 cut(s)	395, 398
PvuI	CGATCG	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	571
RgaI	GCGATCGC	1 cut(s)	430
RsaI	GTAC	3 cut(s)	62, 512, 623
RsaNI	GTAC	3 cut(s)	61, 511, 622
RseI	CAYNNNNRTG	1 cut(s)	1082
SalI	GTCGAC	3 cut(s)	20, 563, 1019
SapI	GCTCTTC	4 cut(s)	174, 413, 1045, 1247
SaqAI	TTAA	2 cut(s)	803, 876
SatI	GCNGC	8 cut(s)	356, 424, 433, 436, 572, 590, 605, 731
Sau3AI	GATC	6 cut(s)	40, 427, 549, 579, 950, 1182
Sau96I	GGNCC	2 cut(s)	834, 923
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	2 cut(s)	671, 901
ScrFI	CCNGG	3 cut(s)	385, 415, 1068
SduI	GDGCHC	1 cut(s)	830
SfaAI	GCGATCGC	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	877
SfcI	CTRYAG	1 cut(s)	728
SgfI	GCGATCGC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	923
SmiMI	CAYNNNNRTG	1 cut(s)	1082
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	6 cut(s)	860, 977, 989, 1035, 1172, 1295
SsiI	CCGC	9 cut(s)	11, 187, 356, 364, 423, 432, 435, 474, 528
SspMI	CTAG	3 cut(s)	150, 896, 1151
StyD4I	CCNGG	3 cut(s)	383, 413, 1066
StyI	CCWWGG	2 cut(s)	753, 912
TaaI	ACNGT	3 cut(s)	36, 519, 869
TaiI	ACGT	4 cut(s)	19, 344, 399, 537
TaqI	TCGA	7 cut(s)	21, 564, 582, 675, 742, 864, 1020
TaqII	GACCGA	1 cut(s)	911
TasI	AATT	6 cut(s)	860, 977, 989, 1035, 1172, 1295
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	4 cut(s)	358, 426, 435, 438
TfiI	GAWTC	1 cut(s)	918
Tru1I	TTAA	2 cut(s)	803, 876
Tru9I	TTAA	2 cut(s)	803, 876
TscAI	CASTG	1 cut(s)	874
TseFI	GTSAC	2 cut(s)	869, 1070
TseI	GCWGC	4 cut(s)	571, 589, 604, 730
Tsp45I	GTSAC	2 cut(s)	869, 1070
TspDTI	ATGAA	6 cut(s)	216, 471, 673, 737, 870, 1002
TspRI	CASTG	1 cut(s)	874
Tth111I	GACNNNGTC	2 cut(s)	395, 398
Van91I	CCANNNNNTGG	1 cut(s)	658
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	1 cut(s)	1035
XbaI	TCTAGA	1 cut(s)	895
XceI	RCATGY	1 cut(s)	740
XmiI	GTMKAC	3 cut(s)	21, 564, 1020
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	3 cut(s)	150, 896, 1151
ZraI	GACGTC	1 cut(s)	397
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.