Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

11240963 .. 11245402

Gene Structure 4440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCTGCCGTGAAATCGAAAGCAACTTGCAGGCTCTCACTGGAGTAAGTCTGGGTGAAGGTTCGGGTGCAACAATGTCCGACGATGAGGATGACATGCAGATGGATTTCCCTATGGATCAATCCGGTGCTGAAGGGCATGACATGATGGGATTTGGCCTCCCAACCGAATCTGAGCGATCACTAATGGAAAGAGTTCGACAGGAATTGAAAATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATCGAAGATGTAAGAGAGGAGATTTTGAGAAAAAGAAGGGCAGGGAAATTACCTGGGGACACAACTACAGTGTTGAAGAATTGGTGGCAGCAGCATTCCAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAGCTTGTGGAGGAGACAGGGTTGCAGCTAAAGCAGATAAACAATTGGTTTATCAATCAAAGGAAGCGCAACTGGCACAGCAACTCTCAATCAGTCACCTCTTTGAAGTCCAAGCGCAAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

167

Amino Acids

19.21

Weight (kDa)

6.85

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	126
AcuI	CTGAAG	3 cut(s)	153, 242, 381
AgsI	TTSAA	3 cut(s)	211, 319, 481
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	220, 379, 403
AluI	AGCT	3 cut(s)	220, 379, 403
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	3, 157, 347
ApeKI	GCWGC	3 cut(s)	331, 334, 400
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	444, 492
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	68, 463
BbvI	GCAGC	3 cut(s)	343, 346, 412
BccI	CCATC	2 cut(s)	97, 142
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	332, 335, 401
BlsI	GCNGC	3 cut(s)	333, 336, 402
Bme1390I	CCNGG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bse1I	ACTGG	2 cut(s)	46, 452
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	46, 452
BseRI	GAGGAG	2 cut(s)	275, 401
BseXI	GCAGC	3 cut(s)	343, 346, 412
BshFI	GGCC	3 cut(s)	5, 159, 349
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	5, 159, 349
Bsp143I	GATC	2 cut(s)	118, 179
BspANI	GGCC	3 cut(s)	5, 159, 349
BspCNI	CTCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	46, 452
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	118, 179
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	7, 33
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	444, 492
BstKTI	GATC	2 cut(s)	121, 182
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	2 cut(s)	118, 179
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 448
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	343, 346, 412
BsuRI	GGCC	3 cut(s)	5, 159, 349
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	39, 318
Cac8I	GCNNGC	2 cut(s)	7, 33
CfoI	GCGC	2 cut(s)	444, 492
Cfr13I	GGNCC	1 cut(s)	348
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	3 cut(s)	97, 140, 145
CviJI	RGCY	7 cut(s)	5, 35, 159, 220, 349, 379, 403
CviKI_1	RGCY	7 cut(s)	5, 35, 159, 220, 349, 379, 403
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	120, 181
DpnII	GATC	2 cut(s)	118, 179
Eco57I	CTGAAG	3 cut(s)	153, 242, 381
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	100, 143, 148
FaiI	YATR	4 cut(s)	98, 116, 141, 146
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	3 cut(s)	96, 139, 144
Fnu4HI	GCNGC	3 cut(s)	332, 335, 401
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	332, 335, 401
GlaI	GCGC	2 cut(s)	443, 491
GluI	GCNGC	3 cut(s)	332, 335, 401
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	5, 159, 349
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	2 cut(s)	444, 492
Hin1II	CATG	3 cut(s)	100, 143, 148
Hin6I	GCGC	2 cut(s)	442, 490
HinP1I	GCGC	2 cut(s)	442, 490
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	170, 243
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	68, 463
Hpy188I	TCNGA	2 cut(s)	82, 175
Hpy188III	TCNNGA	1 cut(s)	240
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	53, 128, 273
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	4 cut(s)	31, 71, 100, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 448
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	100, 143, 148
HspAI	GCGC	2 cut(s)	442, 490
Kzo9I	GATC	2 cut(s)	118, 179
Lsp1109I	GCAGC	3 cut(s)	343, 346, 412
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	2 cut(s)	120, 181
MboI	GATC	2 cut(s)	118, 179
MboII	GAAGA	3 cut(s)	260, 331, 374
MfeI	CAATTG	1 cut(s)	418
MluCI	AATT	5 cut(s)	206, 213, 290, 322, 418
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	82, 170, 253, 379, 484
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	406, 448
NdeII	GATC	2 cut(s)	118, 179
NlaIII	CATG	3 cut(s)	100, 143, 148
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	100
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	170, 243
PkrI	GCNGC	3 cut(s)	333, 336, 402
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	332, 335, 401
Sau3AI	GATC	2 cut(s)	118, 179
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	64, 222, 298, 381, 405, 476
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	206, 213, 290, 322, 418
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	3 cut(s)	18, 199, 246
TasI	AATT	5 cut(s)	206, 213, 290, 322, 418
TfiI	GAWTC	2 cut(s)	170, 243
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	46, 318
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	331, 334, 400
Tsp45I	GTSAC	1 cut(s)	469
TspRI	CASTG	2 cut(s)	46, 318
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.