Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Forward (+)

9798890 .. 9799360

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGTTTCATCACCACCACCAGCAGACCCCTCACGAAATGGCGTTCCACTCCTTCGCGGCGGATCAGCCGACGCTGTCCGGAGCTCCGACGTGGCTCAACAACGCCGCTTTCCGTCAGCAGAACACCAGCTTCGGTGGCCTCCACGACGCGGGGCGAAACGACGACGTGGTTATATCGCCGTCCGGGAAGAGCAGCAACTGCAGCGATCGGAACCGGAGGGAGATAAGTGGCTACGACGGCGGAGAAGAGGAGGAGGGGGAAGACGAGCTGGAGTGCGAGAGCGCGAGGTTCAAGGCCGACATCGTGGAACATCCTCTGTACGAGCAGCTTGTGTCGGCGCACGTGTCGTGCTTGAGGATCGCGACGCCGGTCGATCAGCTGCCGATGGATCGACGAGCAGCTCGTGCAGTCGCAGCGCGTGGTCGACAAGTACTCGGGAGCCAATGGGGATGTTGGAGTCATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

157

Amino Acids

17.25

Weight (kDa)

5.61

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	98 - 129	2.9e-14	KNOX1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	427
AccII	CGCG	5 cut(s)	59, 152, 287, 365, 421
AccIII	TCCGGA	1 cut(s)	80
AciI	CCGC	5 cut(s)	59, 62, 108, 152, 243
AclWI	GGATC	3 cut(s)	72, 368, 399
AcvI	CACGTG	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	2 cut(s)	323, 435
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	2 cut(s)	93, 169
AluBI	AGCT	6 cut(s)	86, 132, 271, 331, 382, 404
AluI	AGCT	6 cut(s)	86, 132, 271, 331, 382, 404
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	72, 368, 399
AlwNI	CAGNNNCTG	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	437
Aor13HI	TCCGGA	1 cut(s)	80
AoxI	GGCC	2 cut(s)	139, 297
ApeKI	GCWGC	6 cut(s)	195, 204, 328, 382, 401, 416
AspLEI	GCGC	3 cut(s)	287, 343, 421
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	405
BbrPI	CACGTG	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	6 cut(s)	207, 216, 340, 369, 413, 428
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	2 cut(s)	166, 256
BcnI	CCSGG	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	8 cut(s)	60, 108, 196, 205, 329, 383, 402, 417
BlsI	GCNGC	8 cut(s)	61, 109, 197, 206, 330, 384, 403, 418
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	437
BmgBI	CACGTC	2 cut(s)	93, 169
BmiI	GGNNCC	2 cut(s)	215, 443
BmrFI	CCNGG	1 cut(s)	187
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	368
BsaWI	WCCGGW	2 cut(s)	80, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	80
BseGI	GGATG	2 cut(s)	313, 458
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseRI	GAGGAG	2 cut(s)	266, 269
BseXI	GCAGC	6 cut(s)	207, 216, 340, 369, 413, 428
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	5 cut(s)	59, 152, 287, 365, 421
Bsh1285I	CGRYCG	2 cut(s)	211, 375
BshFI	GGCC	2 cut(s)	141, 299
BsiEI	CGRYCG	2 cut(s)	211, 375
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	4 cut(s)	81, 186, 217, 371
BslI	CCNNNNNNNGG	1 cut(s)	151
BsnI	GGCC	2 cut(s)	141, 299
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp13I	TCCGGA	1 cut(s)	80
Bsp143I	GATC	5 cut(s)	64, 208, 360, 376, 391
Bsp68I	TCGCGA	1 cut(s)	365
BspACI	CCGC	5 cut(s)	59, 62, 108, 152, 243
BspANI	GGCC	2 cut(s)	141, 299
BspEI	TCCGGA	1 cut(s)	80
BspFNI	CGCG	5 cut(s)	59, 152, 287, 365, 421
BspLI	GGNNCC	2 cut(s)	215, 443
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	3 cut(s)	72, 368, 399
BspQI	GCTCTTC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssMI	GATC	5 cut(s)	64, 208, 360, 376, 391
BssNI	GRCGYC	1 cut(s)	368
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	185, 243
BstACI	GRCGYC	1 cut(s)	368
BstAPI	GCANNNNNTGC	2 cut(s)	201, 407
BstBAI	YACGTR	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	313, 458
BstFNI	CGCG	5 cut(s)	59, 152, 287, 365, 421
BstHHI	GCGC	3 cut(s)	287, 343, 421
BstKTI	GATC	5 cut(s)	67, 211, 363, 379, 394
BstMBI	GATC	5 cut(s)	64, 208, 360, 376, 391
BstMCI	CGRYCG	2 cut(s)	211, 375
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 201, 204, 240, 407, 416
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	202
BstUI	CGCG	5 cut(s)	59, 152, 287, 365, 421
BstV1I	GCAGC	6 cut(s)	207, 216, 340, 369, 413, 428
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	141, 299
BtrI	CACGTC	2 cut(s)	93, 169
BtsCI	GGATG	2 cut(s)	313, 458
BtuMI	TCGCGA	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	201
CfoI	GCGC	3 cut(s)	287, 343, 421
Cfr10I	RCCGGY	1 cut(s)	370
CseI	GACGC	3 cut(s)	82, 158, 376
Csp6I	GTAC	2 cut(s)	322, 434
CviAII	CATG	1 cut(s)	464
CviQI	GTAC	2 cut(s)	322, 434
DpnI	GATC	5 cut(s)	66, 210, 362, 378, 393
DpnII	GATC	5 cut(s)	64, 208, 360, 376, 391
Eam1104I	CTCTTC	2 cut(s)	185, 243
EarI	CTCTTC	2 cut(s)	185, 243
EciI	GGCGGA	2 cut(s)	77, 258
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	1 cut(s)	467
FaiI	YATR	2 cut(s)	176, 465
FatI	CATG	1 cut(s)	463
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	8 cut(s)	60, 108, 196, 205, 329, 383, 402, 417
FokI	GGATG	2 cut(s)	300, 465
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	8 cut(s)	60, 108, 196, 205, 329, 383, 402, 417
GlaI	GCGC	3 cut(s)	286, 342, 420
GluI	GCNGC	8 cut(s)	60, 108, 196, 205, 329, 383, 402, 417
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	141, 299
HapII	CCGG	4 cut(s)	81, 186, 217, 371
HgaI	GACGC	3 cut(s)	82, 158, 376
HhaI	GCGC	3 cut(s)	287, 343, 421
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	467
Hin6I	GCGC	3 cut(s)	285, 341, 419
HinP1I	GCGC	3 cut(s)	285, 341, 419
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	4 cut(s)	81, 186, 217, 371
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	90, 213
Hpy188III	TCNNGA	4 cut(s)	35, 81, 364, 439
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	8 cut(s)	76, 94, 152, 167, 170, 242, 370, 399
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	3 cut(s)	92, 168, 345
HpyCH4V	TGCA	2 cut(s)	204, 410
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 201, 204, 240, 407, 416
HpySE526I	ACGT	3 cut(s)	92, 168, 345
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	1 cut(s)	467
HspAI	GCGC	3 cut(s)	285, 341, 419
Kpn2I	TCCGGA	1 cut(s)	80
Kzo9I	GATC	5 cut(s)	64, 208, 360, 376, 391
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	83, 91, 441
LpnPI	CCDG	7 cut(s)	35, 94, 142, 199, 230, 257, 384
Lsp1109I	GCAGC	6 cut(s)	207, 216, 340, 369, 413, 428
MaeII	ACGT	3 cut(s)	92, 168, 345
MalI	GATC	5 cut(s)	66, 210, 362, 378, 393
MboI	GATC	5 cut(s)	64, 208, 360, 376, 391
MboII	GAAGA	3 cut(s)	202, 260, 275
MhlI	GDGCHC	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	2 cut(s)	113, 437
MnlI	CCTC	9 cut(s)	42, 152, 213, 244, 247, 250, 282, 327, 351
MroI	TCCGGA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	4 cut(s)	81, 186, 217, 371
MspR9I	CCNGG	1 cut(s)	187
MvnI	CGCG	5 cut(s)	59, 152, 287, 365, 421
MwoI	GCNNNNNNNGC	6 cut(s)	138, 201, 204, 240, 407, 416
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	5 cut(s)	64, 208, 360, 376, 391
NlaIII	CATG	1 cut(s)	467
NlaIV	GGNNCC	2 cut(s)	215, 443
NruI	TCGCGA	1 cut(s)	365
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PflFI	GACNNNGTC	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	8 cut(s)	61, 109, 197, 206, 330, 384, 403, 418
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	468
PmaCI	CACGTG	1 cut(s)	346
PmlI	CACGTG	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	468
Ppu21I	YACGTR	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	88
PspCI	CACGTG	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	215, 443
PstI	CTGCAG	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	382
RruI	TCGCGA	1 cut(s)	365
RsaI	GTAC	2 cut(s)	323, 435
RsaNI	GTAC	2 cut(s)	322, 434
SacI	GAGCTC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	185
SatI	GCNGC	8 cut(s)	60, 108, 196, 205, 329, 383, 402, 417
Sau3AI	GATC	5 cut(s)	64, 208, 360, 376, 391
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SsiI	CCGC	5 cut(s)	59, 62, 108, 152, 243
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	185
TaiI	ACGT	3 cut(s)	95, 171, 348
TaqI	TCGA	3 cut(s)	375, 394, 427
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	2 cut(s)	62, 110
TseI	GCWGC	6 cut(s)	195, 204, 328, 382, 401, 416
TspGWI	ACGGA	1 cut(s)	104
Tth111I	GACNNNGTC	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	427
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.