Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8238721.1

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Reverse (-)

3 .. 617

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8238721.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtccgatgatgatgaacaattcgacagtgacattaactcgtatgacgcgagtctagatggacatgacaccatgggattcggtcctctcgtgccaactgaaagtgagagatctctaatggagcgcgtaaggcaagaattgaagcatgaattgaaacagggttacaaggaaaagattgttgacattcgtgaggaaattctgcgtaagagaagagcagggaaacttccaggtgacaccacttctgtgttgaaagcttggtggcaatcacattccaaatggccttacccaactgaggaagacaaagcgaggctagtgcaggaaacagggttgcaattgaagcagatcaataactggtttatcaatcaaagaaaaaggaactggcacagcaacctctccacaacttctgttttgaagagcaagcgcaagaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

143

Amino Acids

16.87

Weight (kDa)

9.12

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 126
AcsI	RAATTY	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	142, 154, 250, 337, 412
AjnI	CCWGG	1 cut(s)	226
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AoxI	GGCC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	126, 423
AspS9I	GGNCC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	303
BccI	CCATC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	228
BfaI	CTAG	2 cut(s)	56, 311
BglII	AGATCT	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	228
BoxI	GACNNNNGTC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	356, 383
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	356, 383
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	50, 126
BshFI	GGCC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	292
BsnI	GGCC	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	110, 342
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	50, 126
BspQI	GCTCTTC	2 cut(s)	205, 407
BsrI	ACTGG	2 cut(s)	356, 383
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	110, 342
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	205, 407
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	50, 126
BstHHI	GCGC	2 cut(s)	126, 423
BstKTI	GATC	2 cut(s)	113, 345
BstMBI	GATC	2 cut(s)	110, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 337
BstNI	CCWGG	1 cut(s)	228
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	2 cut(s)	50, 126
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	419
CfoI	GCGC	2 cut(s)	126, 423
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	1 cut(s)	56
CviAII	CATG	3 cut(s)	65, 73, 146
CviJI	RGCY	3 cut(s)	254, 280, 310
CviKI_1	RGCY	3 cut(s)	254, 280, 310
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	2 cut(s)	112, 344
DpnII	GATC	2 cut(s)	110, 342
Eam1104I	CTCTTC	2 cut(s)	205, 407
EarI	CTCTTC	2 cut(s)	205, 407
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	68, 76, 149
FaiI	YATR	4 cut(s)	45, 66, 74, 147
FatI	CATG	3 cut(s)	64, 72, 145
FspBI	CTAG	2 cut(s)	56, 311
GlaI	GCGC	2 cut(s)	125, 422
HaeIII	GGCC	1 cut(s)	280
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	126, 423
Hin1II	CATG	3 cut(s)	68, 76, 149
Hin6I	GCGC	2 cut(s)	124, 421
HinP1I	GCGC	2 cut(s)	124, 421
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	52, 78
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	56, 188
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	316, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 337
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	68, 76, 149
HspAI	GCGC	2 cut(s)	124, 421
Kzo9I	GATC	2 cut(s)	110, 342
LguI	GCTCTTC	2 cut(s)	205, 407
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	143, 201, 213, 240, 302, 309, 337, 364
MaeI	CTAG	2 cut(s)	56, 311
MaeIII	GTNAC	3 cut(s)	29, 161, 230
MalI	GATC	2 cut(s)	112, 344
MboI	GATC	2 cut(s)	110, 342
MboII	GAAGA	3 cut(s)	222, 308, 424
MfeI	CAATTG	1 cut(s)	332
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	5 cut(s)	20, 137, 149, 195, 332
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	6 cut(s)	96, 184, 286, 300, 401, 420
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	2 cut(s)	50, 126
MwoI	GCNNNNNNNGC	2 cut(s)	130, 337
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	110, 342
NlaIII	CATG	3 cut(s)	68, 76, 149
NmuCI	GTSAC	2 cut(s)	29, 230
OliI	CACNNNNGTG	1 cut(s)	242
PciSI	GCTCTTC	2 cut(s)	205, 407
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 87
PfeI	GAWTC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	242
SapI	GCTCTTC	2 cut(s)	205, 407
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	110, 342
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	4 cut(s)	232, 256, 393, 431
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	20, 137, 149, 195, 332
SspMI	CTAG	2 cut(s)	56, 311
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	5 cut(s)	20, 137, 149, 195, 332
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	29, 230
Tsp45I	GTSAC	2 cut(s)	29, 230
TspDTI	ATGAA	2 cut(s)	30, 162
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	195
XbaI	TCTAGA	1 cut(s)	55
XspI	CTAG	2 cut(s)	56, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.