Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006503

Physical Location & Seq

Genomic Coordinates Reverse (-)

90960488 .. 90965163

Gene Structure 4676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGAAGCTGCGGCTGGTTTATGTGCCATAGACGTGTTTGGGGCCATGATTGAGCCGACGGTTGTGCTGCCTTTACCTGAAGATGGATATTTGTTCCGAGGTTGGTATCGCGACTCATGTTGTTCGTTTTCGACGACTAGTCTGCAAGCAGGGACCCGCTGTGTTGTGGGCTTCCCACTCGGGGAGCCTCTTCAGGGTCTGAGCCTCTTTCGAAGCGCGCGTGAGGGGTCAGCCGCCGGCAGCAGCAGTAGCCCAGCTTCAGCTTCGCTTAAGAGGAACAGCGTTTTGCCTTTGTGGGGCCCGCCGGCGCTGCTTTTTTCACAGCTGTACGAACAGGATTCTCTGACAGAAGGCCTCGCCCCCACGTGGCTCAACGCGCCGCCGTTCCGCTCCCAGAACAGCTTCTCCAGGAACGACGACGTCGTCATATCGCCGTCCGGGAAGAGCGGCGATCGCGGCGGCGAAGAGGACGAGGAGGATGAACCAGAGTGCGAGAGCGGGAGGTTCAAAGCCGACATAGTAGGCCACCCTTTGTACGAACAGTTGGTCTCCGCACACGTGTCGTGTCTGAGGATCGCCACTCCGGTCGACCAGCTGCCCAAGATCGACGAGCAGCTCGTGCAGTCGCAGCGCGTGGTGGACAAGTACTCGGCGATGAGAGCCAACGGTGATTTCCAAGTTTTGGATGAGAAAGAACTTGACTCGTTCATGACAAACTATGTTCTTTTGCTTTGTTCCTTCAAAGAACAACTGCAGCAACATGTTCGAGTTCATGCCATGGAGGCAGTCATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAAGCTTAACAGGTGTATCAACGGCTGAGGGCACAGGAGCCACAATGTCCGATGATGATGAACAATTCGACAGTGACATTAACTCGTATGATGCGAGTCTGGATGGACATGACACCATGGGATTCGGTCCTCTCGTGCCAACTGAAAGTGAGAGATCTCTAATGGAGCGCGTAAGGCAAGAATTGAAGCATGAATTGAAACAGGGTTACAAGGAAAAGATTGTCGACATTCGAGAGGAAATTCTGCGTAAGAGAAGAGCAGGGAAACTTCCAGGTGACACCACTTCTGTGTTGAAAGCTTGGTGGCAATCACATTCCAAATGGCCTTACCCAACTGAGGAAGACAAAGCGAGGCTAGTGCAGGAAACAGGGTTGCAATTGAAGCAGATCAATAACTGGTTTATCAATCAAAGAAAAAGGAACTGGCACAGCAACCTCTCCACAACTTCTGTTTTGAAGAGCAAGCGCAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009725 GO:0009726 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

431

Amino Acids

48.14

Weight (kDa)

5.14

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	169 - 209	3.9e-17	KNOX1 domain
KNOX2	PF03791	227 - 277	8.7e-16	KNOX2 domain
ELK	PF03789	334 - 355	7.4e-07	ELK domain
Homeobox_KN	PF05920	374 - 413	9.6e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32040 AT4G32040
fragaria_vesca	FvH4_1g01720 FvH4_1g01720 FvH4_1g01720
malus_domestica	MD02G1012900.v1.1 MD15G1159800.v1.1
prunus_persica	Prupe.7G254700_v2.0.a1 Prupe.7G254700_v2.0.a1
pyrus_communis	pycom02g01200 pycom06g06940 pycom15g14350 pycom15g14360
rosa_chinensis	RchiOBHm_Chr2g0086661
rosa_laevigata	RLG00000015771
rosa_multiflora	Rmu_co8121786.1_g000001 Rmu_co8238721.1_g000001 Rmu_sc0002376.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154340
rosa_rugosa	Rorug01G0468200 Rorug01G0468200
rosa_samantha	Rh2AG020200 Rh2BG020100 Rh2CG019700 Rh2DG020600
rosa_wichuraiana	Rw2G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AatII	GACGTC	1 cut(s)	423
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccBSI	CCGCTC	3 cut(s)	390, 447, 498
AccI	GTMKAC	2 cut(s)	588, 1044
AccII	CGCG	7 cut(s)	111, 218, 220, 377, 456, 633, 990
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	1 cut(s)	1059
AcuI	CTGAAG	3 cut(s)	99, 176, 243
AcvI	CACGTG	2 cut(s)	366, 559
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	3 cut(s)	329, 536, 647
AfiI	CCNNNNNNNGG	7 cut(s)	83, 181, 194, 296, 366, 682, 1156
AflII	CTTAAG	1 cut(s)	269
AflIII	ACRYGT	4 cut(s)	33, 556, 558, 760
AgsI	TTSAA	7 cut(s)	508, 742, 1006, 1018, 1114, 1201, 1276
AhdI	GACNNNNNGTC	1 cut(s)	138
AhlI	ACTAGT	1 cut(s)	137
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	407, 1090
AjuI	GAANNNNNNNTTGG	2 cut(s)	656, 688
AleI	CACNNNNGTG	1 cut(s)	1106
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
Alw26I	GTCTC	1 cut(s)	553
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	5 cut(s)	42, 298, 352, 523, 1142
ApaI	GGGCCC	1 cut(s)	302
ApeKI	GCWGC	9 cut(s)	8, 67, 240, 243, 310, 595, 613, 628, 754
ApoI	RAATTY	1 cut(s)	1059
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AsiSI	GCGATCGC	1 cut(s)	454
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	7 cut(s)	218, 220, 310, 379, 633, 990, 1287
AspS9I	GGNCC	5 cut(s)	42, 153, 298, 299, 947
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	2 cut(s)	680, 1106
AsuII	TTCGAA	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	2 cut(s)	153, 947
BaeGI	GKGCMC	2 cut(s)	302, 854
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BanII	GRGCYC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BauI	CACGAG	2 cut(s)	617, 953
BbrPI	CACGTG	2 cut(s)	366, 559
BbsI	GAAGAC	1 cut(s)	1167
BbvCI	CCTCAGC	1 cut(s)	846
BbvI	GCAGC	8 cut(s)	54, 252, 255, 297, 582, 625, 640, 766
BccI	CCATC	2 cut(s)	77, 917
BceAI	ACGGC	3 cut(s)	367, 418, 858
BciT130I	CCWGG	2 cut(s)	409, 1092
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	553
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	2 cut(s)	138, 1175
BfmI	CTRYAG	1 cut(s)	752
BfoI	RGCGCY	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	782
BglII	AGATCT	1 cut(s)	974
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	3 cut(s)	409, 439, 1092
Bme18I	GGWCC	2 cut(s)	153, 947
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	179
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	5 cut(s)	42, 153, 298, 299, 947
BmiI	GGNNCC	7 cut(s)	43, 154, 155, 186, 299, 300, 859
BmrFI	CCNGG	3 cut(s)	409, 439, 1092
BmsI	GCATC	1 cut(s)	901
BpiI	GAAGAC	1 cut(s)	1167
BpmI	CTGGAG	1 cut(s)	391
Bpu10I	CCTNAGC	1 cut(s)	846
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	439
BsaAI	YACGTR	2 cut(s)	366, 559
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	3 cut(s)	97, 777, 936
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 181, 194, 296, 366, 682, 1156
Bse118I	RCCGGY	2 cut(s)	236, 304
Bse1I	ACTGG	2 cut(s)	1220, 1247
BseBI	CCWGG	2 cut(s)	409, 1092
BseDI	CCNNGG	3 cut(s)	97, 777, 936
BseGI	GGATG	3 cut(s)	484, 691, 928
BseLI	CCNNNNNNNGG	7 cut(s)	83, 181, 194, 296, 366, 682, 1156
BseMII	CTCAG	4 cut(s)	191, 560, 837, 1146
BseNI	ACTGG	2 cut(s)	1220, 1247
BsePI	GCGCGC	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	2 cut(s)	302, 854
BseXI	GCAGC	8 cut(s)	54, 252, 255, 297, 582, 625, 640, 766
BseYI	CCCAGC	1 cut(s)	253
BsgI	GTGCAG	2 cut(s)	641, 1199
Bsh1236I	CGCG	7 cut(s)	111, 218, 220, 377, 456, 633, 990
Bsh1285I	CGRYCG	2 cut(s)	454, 588
BshFI	GGCC	5 cut(s)	44, 300, 354, 525, 1144
BsiEI	CGRYCG	2 cut(s)	454, 588
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	4 cut(s)	237, 305, 438, 584
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	7 cut(s)	83, 181, 194, 296, 366, 682, 1156
BsmAI	GTCTC	1 cut(s)	553
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	5 cut(s)	44, 300, 354, 525, 1144
Bso31I	GGTCTC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	211
Bsp120I	GGGCCC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	302, 854
Bsp143I	GATC	5 cut(s)	451, 573, 603, 974, 1206
Bsp19I	CCATGG	2 cut(s)	777, 936
Bsp68I	TCGCGA	1 cut(s)	111
BspANI	GGCC	5 cut(s)	44, 300, 354, 525, 1144
BspCNI	CTCAG	4 cut(s)	192, 561, 838, 1147
BspFNI	CGCG	7 cut(s)	111, 218, 220, 377, 456, 633, 990
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	7 cut(s)	43, 154, 155, 186, 299, 300, 859
BspMAI	CTGCAG	1 cut(s)	756
BspPI	GGATC	1 cut(s)	581
BspQI	GCTCTTC	3 cut(s)	437, 1069, 1271
BspT104I	TTCGAA	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	553
BsrBI	CCGCTC	3 cut(s)	390, 447, 498
BsrFI	RCCGGY	2 cut(s)	236, 304
BsrI	ACTGG	2 cut(s)	1220, 1247
BssAI	RCCGGY	2 cut(s)	236, 304
BssECI	CCNNGG	3 cut(s)	97, 777, 936
BssHII	GCGCGC	1 cut(s)	216
BssMI	GATC	5 cut(s)	451, 573, 603, 974, 1206
BssNI	GRCGYC	1 cut(s)	420
BssSI	CACGAG	2 cut(s)	617, 953
BssT1I	CCWWGG	2 cut(s)	777, 936
Bst2BI	CACGAG	2 cut(s)	617, 953
Bst2UI	CCWGG	2 cut(s)	409, 1092
Bst4CI	ACNGT	4 cut(s)	61, 543, 668, 893
Bst6I	CTCTTC	5 cut(s)	195, 437, 459, 1069, 1271
BstACI	GRCGYC	1 cut(s)	420
BstAFI	CTTAAG	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstBAI	YACGTR	2 cut(s)	366, 559
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	6 cut(s)	147, 218, 238, 302, 306, 1283
BstDEI	CTNAG	4 cut(s)	200, 569, 846, 1155
BstDSI	CCRYGG	2 cut(s)	777, 936
BstF5I	GGATG	3 cut(s)	484, 691, 928
BstFNI	CGCG	7 cut(s)	111, 218, 220, 377, 456, 633, 990
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	7 cut(s)	218, 220, 310, 379, 633, 990, 1287
BstKTI	GATC	5 cut(s)	454, 576, 606, 977, 1209
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	5 cut(s)	451, 573, 603, 974, 1206
BstMCI	CGRYCG	2 cut(s)	454, 588
BstNI	CCWGG	2 cut(s)	409, 1092
BstNSI	RCATGY	1 cut(s)	764
BstSCI	CCNGG	3 cut(s)	407, 437, 1090
BstSFI	CTRYAG	1 cut(s)	752
BstSLI	GKGCMC	2 cut(s)	302, 854
BstUI	CGCG	7 cut(s)	111, 218, 220, 377, 456, 633, 990
BstV1I	GCAGC	8 cut(s)	54, 252, 255, 297, 582, 625, 640, 766
BstV2I	GAAGAC	1 cut(s)	1167
BstX2I	RGATCY	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	974
BsuRI	GGCC	5 cut(s)	44, 300, 354, 525, 1144
BtgI	CCRYGG	2 cut(s)	777, 936
BtgZI	GCGATG	1 cut(s)	668
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	484, 691, 928
BtsIMutI	CAGTG	1 cut(s)	898
BtuMI	TCGCGA	1 cut(s)	111
Cac8I	GCNNGC	6 cut(s)	147, 218, 238, 302, 306, 1283
CaiI	CAGNNNCTG	1 cut(s)	199
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	7 cut(s)	218, 220, 310, 379, 633, 990, 1287
Cfr10I	RCCGGY	2 cut(s)	236, 304
Cfr13I	GGNCC	5 cut(s)	42, 153, 298, 299, 947
Csp6I	GTAC	3 cut(s)	328, 535, 646
CviQI	GTAC	3 cut(s)	328, 535, 646
DdeI	CTNAG	4 cut(s)	200, 569, 846, 1155
DpnI	GATC	5 cut(s)	453, 575, 605, 976, 1208
DpnII	GATC	5 cut(s)	451, 573, 603, 974, 1206
DrdI	GACNNNNNNGTC	1 cut(s)	422
DriI	GACNNNNNGTC	1 cut(s)	138
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	5 cut(s)	195, 437, 459, 1069, 1271
Eam1105I	GACNNNNNGTC	1 cut(s)	138
EarI	CTCTTC	5 cut(s)	195, 437, 459, 1069, 1271
Eco130I	CCWWGG	2 cut(s)	777, 936
Eco147I	AGGCCT	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	153, 947
Eco57I	CTGAAG	3 cut(s)	99, 176, 243
Eco72I	CACGTG	2 cut(s)	366, 559
Eco88I	CYCGRG	1 cut(s)	179
EcoO109I	RGGNCCY	2 cut(s)	153, 298
EcoRII	CCWGG	2 cut(s)	407, 1090
EcoT14I	CCWWGG	2 cut(s)	777, 936
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	777, 936
FaqI	GGGAC	1 cut(s)	166
FauI	CCCGC	3 cut(s)	164, 309, 491
FblI	GTMKAC	2 cut(s)	588, 1044
FokI	GGATG	3 cut(s)	491, 698, 935
FriOI	GRGCYC	1 cut(s)	302
FspBI	CTAG	2 cut(s)	138, 1175
GlaI	GCGC	7 cut(s)	217, 219, 309, 378, 632, 989, 1286
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	5 cut(s)	44, 300, 354, 525, 1144
HapII	CCGG	4 cut(s)	237, 305, 438, 584
HhaI	GCGC	7 cut(s)	218, 220, 310, 379, 633, 990, 1287
Hin1I	GRCGYC	1 cut(s)	420
Hin6I	GCGC	7 cut(s)	216, 218, 308, 377, 631, 988, 1285
HinP1I	GCGC	7 cut(s)	216, 218, 308, 377, 631, 988, 1285
HincII	GTYRAC	2 cut(s)	589, 1045
HindII	GTYRAC	2 cut(s)	589, 1045
HindIII	AAGCTT	2 cut(s)	823, 1116
HinfI	GANTC	5 cut(s)	113, 338, 701, 916, 942
HpaII	CCGG	4 cut(s)	237, 305, 438, 584
HphI	GGTGA	2 cut(s)	680, 1106
Hpy166II	GTNNAC	3 cut(s)	589, 640, 1045
Hpy188I	TCNGA	5 cut(s)	98, 201, 345, 570, 871
Hpy188III	TCNNGA	4 cut(s)	110, 709, 920, 1052
Hpy8I	GTNNAC	3 cut(s)	589, 640, 1045
Hpy99I	CGWCG	6 cut(s)	61, 136, 419, 422, 425, 611
HpyAV	CCTTC	2 cut(s)	344, 748
HpyCH4III	ACNGT	4 cut(s)	61, 543, 668, 893
HpyCH4IV	ACGT	4 cut(s)	33, 365, 420, 558
HpyCH4V	TGCA	5 cut(s)	145, 622, 754, 1180, 1195
HpyF3I	CTNAG	4 cut(s)	200, 569, 846, 1155
HpySE526I	ACGT	4 cut(s)	33, 365, 420, 558
Hsp92I	GRCGYC	1 cut(s)	420
HspAI	GCGC	7 cut(s)	216, 218, 308, 377, 631, 988, 1285
KflI	GGGWCCC	1 cut(s)	153
KroI	GCCGGC	2 cut(s)	236, 304
KroNI	GCCGGC	2 cut(s)	238, 306
Kzo9I	GATC	5 cut(s)	451, 573, 603, 974, 1206
LguI	GCTCTTC	3 cut(s)	437, 1069, 1271
LmnI	GCTCC	5 cut(s)	184, 395, 802, 857, 985
Lsp1109I	GCAGC	8 cut(s)	54, 252, 255, 297, 582, 625, 640, 766
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	2 cut(s)	138, 1175
MaeII	ACGT	4 cut(s)	33, 365, 420, 558
MaeIII	GTNAC	3 cut(s)	893, 1025, 1094
MalI	GATC	5 cut(s)	453, 575, 605, 976, 1208
MbiI	CCGCTC	3 cut(s)	390, 447, 498
MboI	GATC	5 cut(s)	451, 573, 603, 974, 1206
MboII	GAAGA	7 cut(s)	92, 182, 454, 476, 1086, 1172, 1288
MfeI	CAATTG	1 cut(s)	1196
MflI	RGATCY	1 cut(s)	974
MhlI	GDGCHC	2 cut(s)	302, 854
MluCI	AATT	5 cut(s)	884, 1001, 1013, 1059, 1196
MlyI	GAGTC	3 cut(s)	107, 695, 925
MreI	CGCCGGCG	1 cut(s)	304
MroNI	GCCGGC	2 cut(s)	236, 304
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	3 cut(s)	270, 827, 900
MslI	CAYNNNNRTG	2 cut(s)	32, 1106
MspA1I	CMGCKG	3 cut(s)	159, 325, 595
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	4 cut(s)	237, 305, 438, 584
MspR9I	CCNGG	3 cut(s)	409, 439, 1092
MunI	CAATTG	1 cut(s)	1196
MvaI	CCWGG	2 cut(s)	409, 1092
MvnI	CGCG	7 cut(s)	111, 218, 220, 377, 456, 633, 990
NaeI	GCCGGC	2 cut(s)	238, 306
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	2 cut(s)	777, 936
NdeII	GATC	5 cut(s)	451, 573, 603, 974, 1206
NgoMIV	GCCGGC	2 cut(s)	236, 304
NlaIV	GGNNCC	7 cut(s)	43, 154, 155, 186, 299, 300, 859
NmeAIII	GCCGAG	1 cut(s)	629
NmuCI	GTSAC	2 cut(s)	893, 1094
NruI	TCGCGA	1 cut(s)	111
NspI	RCATGY	1 cut(s)	764
NspV	TTCGAA	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	1106
PagI	TCATGA	1 cut(s)	708
PauI	GCGCGC	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	354
PciI	ACATGT	1 cut(s)	760
PciSI	GCTCTTC	3 cut(s)	437, 1069, 1271
PcsI	WCGNNNNNNNCGW	6 cut(s)	131, 217, 420, 615, 911, 951
PdiI	GCCGGC	2 cut(s)	238, 306
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	338, 942
PflFI	GACNNNGTC	2 cut(s)	419, 422
PflMI	CCANNNNNTGG	1 cut(s)	682
PfoI	TCCNGGA	2 cut(s)	407, 437
Ple19I	CGATCG	1 cut(s)	454
PleI	GAGTC	3 cut(s)	107, 695, 924
PmaCI	CACGTG	2 cut(s)	366, 559
PmlI	CACGTG	2 cut(s)	366, 559
PpsI	GAGTC	3 cut(s)	107, 695, 924
Ppu21I	YACGTR	2 cut(s)	366, 559
PpuMI	RGGWCCY	1 cut(s)	153
PscI	ACATGT	1 cut(s)	760
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	407, 1090
PspCI	CACGTG	2 cut(s)	366, 559
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	407, 1090
PspN4I	GGNNCC	7 cut(s)	43, 154, 155, 186, 299, 300, 859
PspOMI	GGGCCC	1 cut(s)	298
PspPI	GGNCC	5 cut(s)	42, 153, 298, 299, 947
PspPPI	RGGWCCY	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	756
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	974
PsyI	GACNNNGTC	2 cut(s)	419, 422
PteI	GCGCGC	1 cut(s)	216
PvuI	CGATCG	1 cut(s)	454
PvuII	CAGCTG	2 cut(s)	325, 595
RgaI	GCGATCGC	1 cut(s)	454
RruI	TCGCGA	1 cut(s)	111
RsaI	GTAC	3 cut(s)	329, 536, 647
RsaNI	GTAC	3 cut(s)	328, 535, 646
RseI	CAYNNNNRTG	2 cut(s)	32, 1106
SalI	GTCGAC	2 cut(s)	587, 1043
SapI	GCTCTTC	3 cut(s)	437, 1069, 1271
SaqAI	TTAA	3 cut(s)	270, 827, 900
Sau3AI	GATC	5 cut(s)	451, 573, 603, 974, 1206
Sau96I	GGNCC	5 cut(s)	42, 153, 298, 299, 947
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	3 cut(s)	107, 695, 925
ScrFI	CCNGG	3 cut(s)	409, 439, 1092
SduI	GDGCHC	2 cut(s)	302, 854
SfaAI	GCGATCGC	1 cut(s)	454
SfaNI	GCATC	1 cut(s)	901
SfcI	CTRYAG	1 cut(s)	752
SfuI	TTCGAA	1 cut(s)	211
SgfI	GCGATCGC	1 cut(s)	454
SgrAI	CRCCGGYG	1 cut(s)	304
SinI	GGWCC	2 cut(s)	153, 947
SmiMI	CAYNNNNRTG	2 cut(s)	32, 1106
SmlI	CTYRAG	2 cut(s)	269, 806
SmoI	CTYRAG	2 cut(s)	269, 806
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	5 cut(s)	884, 1001, 1013, 1059, 1196
SseBI	AGGCCT	1 cut(s)	354
SspMI	CTAG	2 cut(s)	138, 1175
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	407, 437, 1090
StyI	CCWWGG	2 cut(s)	777, 936
TaaI	ACNGT	4 cut(s)	61, 543, 668, 893
TaiI	ACGT	4 cut(s)	36, 368, 423, 561
TaqI	TCGA	8 cut(s)	131, 211, 588, 606, 766, 888, 1044, 1051
TaqII	GACCGA	1 cut(s)	935
TasI	AATT	5 cut(s)	884, 1001, 1013, 1059, 1196
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	6 cut(s)	14, 236, 382, 450, 459, 462
TfiI	GAWTC	2 cut(s)	338, 942
Tru1I	TTAA	3 cut(s)	270, 827, 900
Tru9I	TTAA	3 cut(s)	270, 827, 900
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	2 cut(s)	893, 1094
TseI	GCWGC	9 cut(s)	8, 67, 240, 243, 310, 595, 613, 628, 754
Tsp45I	GTSAC	2 cut(s)	893, 1094
TspDTI	ATGAA	5 cut(s)	495, 697, 761, 894, 1026
TspRI	CASTG	1 cut(s)	898
Tth111I	GACNNNGTC	2 cut(s)	419, 422
Van91I	CCANNNNNTGG	1 cut(s)	682
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	153, 947
XapI	RAATTY	1 cut(s)	1059
XceI	RCATGY	1 cut(s)	764
XmiI	GTMKAC	2 cut(s)	588, 1044
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	2 cut(s)	138, 1175
ZraI	GACGTC	1 cut(s)	421
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.