Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006729

Physical Location & Seq

Genomic Coordinates Reverse (-)

16487703 .. 16491054

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTCGGACTCTGGTGGTGGTTCTCACAAGTCCTCCACAACAAAACCTTCCGTTTTCGGACTAAACCTTTACTTAGTCATCGCGATTTGTTCTGTTTTCATACTCTTGATCTCACTCTTGATCTTCCTCTTCGTCTGCTTGAATCGCGTCTCACGCGCTCGTAGAATGCGCGTTAAACACAGCTCCGGCTCGATCCCGCTCGTCTCTAAAGAAATCTCGGAGATCAAGACGGTCGGCAAATTCATAAACTCCGACGATTCCAAGGGTAAAATCGGAAACGAAGTTGTTGTTGTTGTCTCCGCCACAAGCAAAGAAGCGACAAGTGGTTTTGATACTTTGTCGGTGGCTTCGAGCGGTGACGTTGGTACTTCTGAGGCAATGGGATGGGGAAAATGGTACAGCTTGAAAGATCTGGAGATTGCGACACGTGGCTTCTCTGATGATAACATGATCGGTGAAGGAGGGTACGGTGTCGTTTACAGAGCTGATTTCTCTGACGGTTCTGTCGCCGCCGTCAAGAATCTCCTTAACAACAAGGGTCAGGCGGAGAAGGAGTTCAAAGTTGAAGTAGAAGCAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTGCTCAAAGTCAAAGGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGTTACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAGATAGCCATTGGAACAGCAAAAGGATTAGCCTATTTACATGAAGGGCTTGAACCTAAGGTTGTGCACCGTGATGTGAAATCTAGTAACATCTTGCTCGATAAGAAATGGAACGCGAAAGTGTCTGATTTTGGTTTGGCCAAGTTATTAGGATCTGAAACAAGCTACGTGACAACTCGTGTGATGGGAACTTTTGGATATGTTTCACCGGAATATGCAAGTACTGGTATGCTCAATGAGTGTAGTGATGTCTACAGTTTCGGTGTTCTGCTCATGGAGATCATTACAGGAAGGAGCCCAGTTGATTATTCAAGACCGCCTGGCGAGATGAACTTAGTGGATTGGTTCAAAGGAATGGTTGCAAGTAGACGTGGAGAAGAAGTTATAGACCCTAAAATCAAGACATCACCTCCTCCAAGAGCTTTGAAAAGAGCTTTGCTTGTTTGTTTGCGTTGCATAGACCTTGACTCTAGTAAACGACCAAAGATGGGACAAATCATTCACATGCTTGAGGCTGAAGATTTTCCATTCCGTCCTGAACACAGATCAAACCAGGAAAGATCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

437

Amino Acids

47.98

Weight (kDa)

8.68

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	147 - 416	3.9e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	149 - 418	2.6e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34500
fragaria_vesca	FvH4_2g08720 FvH4_2g08720 FvH4_2g08720
malus_domestica	MD05G1067100.v1.1 MD10G1076700.v1.1
prunus_persica	Prupe.8G097500_v2.0.a1
pyrus_communis	pycom05g05790 pycom10g06000
rosa_chinensis	RchiOBHm_Chr6g0264191
rosa_laevigata	RLG00000014281
rosa_multiflora	Rmu_sc0005325.1_g000012 Rmu_sc0007214.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431530 Rroxscaffold_176G00431580 Rroxscaffold_4G00299000 Rroxscaffold_7G00203440
rosa_rugosa	Rorug06G0009700 Rorug06G0009800
rosa_samantha	Rh6AG130100 Rh6BG125900 Rh6BG126900 Rh6BG127300 Rh6CG125800 Rh6DG112600
rosa_wichuraiana	Rw6G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	503
AccBSI	CCGCTC	2 cut(s)	199, 354
AccI	GTMKAC	2 cut(s)	996, 1111
AccII	CGCG	5 cut(s)	83, 147, 156, 171, 860
AciI	CCGC	7 cut(s)	197, 300, 354, 510, 545, 739, 1061
AclWI	GGATC	2 cut(s)	187, 904
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	1281
AcvI	CACGTG	1 cut(s)	428
AfaI	GTAC	4 cut(s)	367, 398, 467, 967
AfiI	CCNNNNNNNGG	1 cut(s)	1232
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	8 cut(s)	142, 406, 559, 566, 797, 1056, 1093, 1171
AjiI	CACGTC	1 cut(s)	1115
AjnI	CCWGG	2 cut(s)	1063, 1296
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	6 cut(s)	183, 402, 485, 909, 1166, 1178
AluI	AGCT	6 cut(s)	183, 402, 485, 909, 1166, 1178
Alw21I	GWGCWC	2 cut(s)	637, 813
Alw26I	GTCTC	3 cut(s)	154, 208, 301
Alw44I	GTGCAC	1 cut(s)	809
AlwI	GGATC	2 cut(s)	187, 904
AoxI	GGCC	1 cut(s)	882
ApaLI	GTGCAC	1 cut(s)	809
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	554, 1266
AspLEI	GCGC	2 cut(s)	158, 171
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	6 cut(s)	368, 467, 713, 727, 942, 1143
AvaII	GGWCC	1 cut(s)	710
AxyI	CCTNAGG	1 cut(s)	801
BaeGI	GKGCMC	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	1043
BauI	CACGAG	1 cut(s)	921
BbrPI	CACGTG	1 cut(s)	428
Bbv12I	GWGCWC	2 cut(s)	637, 813
BccI	CCATC	4 cut(s)	378, 607, 922, 1225
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	1065, 1298
BcoDI	GTCTC	3 cut(s)	154, 208, 301
BfaI	CTAG	2 cut(s)	828, 1215
BfmI	CTRYAG	1 cut(s)	997
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmcAI	AGTACT	1 cut(s)	967
Bme1390I	CCNGG	2 cut(s)	1065, 1298
Bme18I	GGWCC	1 cut(s)	710
BmgBI	CACGTC	1 cut(s)	1115
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	1 cut(s)	1040
BmrFI	CCNGG	2 cut(s)	1065, 1298
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	1 cut(s)	639
BmuI	ACTGGG	1 cut(s)	1037
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	1274
BsaAI	YACGTR	3 cut(s)	428, 729, 913
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	2 cut(s)	712, 952
Bsc4I	CCNNNNNNNGG	1 cut(s)	1232
Bse1I	ACTGG	2 cut(s)	973, 1043
Bse21I	CCTNAGG	1 cut(s)	801
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	1065, 1298
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	389, 654
BseLI	CCNNNNNNNGG	1 cut(s)	1232
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	973, 1043
BseRI	GAGGAG	1 cut(s)	1146
BseSI	GKGCMC	1 cut(s)	813
Bsh1236I	CGCG	5 cut(s)	83, 147, 156, 171, 860
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	884
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	2 cut(s)	637, 813
BsiSI	CCGG	3 cut(s)	186, 713, 953
BslFI	GGGAC	1 cut(s)	1248
BslI	CCNNNNNNNGG	1 cut(s)	1232
BsmAI	GTCTC	3 cut(s)	154, 208, 301
BsmBI	CGTCTC	2 cut(s)	154, 208
BsmFI	GGGAC	1 cut(s)	1248
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	884
Bsp1286I	GDGCHC	3 cut(s)	637, 813, 1043
Bsp68I	TCGCGA	1 cut(s)	83
BspACI	CCGC	7 cut(s)	197, 300, 354, 510, 545, 739, 1061
BspANI	GGCC	1 cut(s)	884
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	5 cut(s)	83, 147, 156, 171, 860
BspLI	GGNNCC	1 cut(s)	1040
BspPI	GGATC	2 cut(s)	187, 904
BsrBI	CCGCTC	2 cut(s)	199, 354
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	973, 1043
BssECI	CCNNGG	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	921
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	921
Bst2UI	CCWGG	2 cut(s)	1065, 1298
Bst4CI	ACNGT	7 cut(s)	232, 470, 500, 632, 701, 815, 1001
Bst6I	CTCTTC	1 cut(s)	134
BstBAI	YACGTR	3 cut(s)	428, 729, 913
BstDEI	CTNAG	4 cut(s)	73, 372, 801, 1078
BstF5I	GGATG	2 cut(s)	389, 654
BstFNI	CGCG	5 cut(s)	83, 147, 156, 171, 860
BstHHI	GCGC	2 cut(s)	158, 171
BstMAI	GTCTC	3 cut(s)	154, 208, 301
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 153, 632
BstNI	CCWGG	2 cut(s)	1065, 1298
BstNSI	RCATGY	1 cut(s)	1252
BstSCI	CCNGG	2 cut(s)	1063, 1296
BstSFI	CTRYAG	1 cut(s)	997
BstSLI	GKGCMC	1 cut(s)	813
BstUI	CGCG	5 cut(s)	83, 147, 156, 171, 860
BstX2I	RGATCY	2 cut(s)	409, 896
BstYI	RGATCY	2 cut(s)	409, 896
Bsu36I	CCTNAGG	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	884
BtgZI	GCGATG	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	1115
BtsCI	GGATG	2 cut(s)	389, 654
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	2 cut(s)	637, 695
BtuMI	TCGCGA	1 cut(s)	83
CfoI	GCGC	2 cut(s)	158, 171
Cfr13I	GGNCC	1 cut(s)	710
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	366, 397, 466, 966
CviAII	CATG	5 cut(s)	448, 742, 785, 1018, 1249
CviQI	GTAC	4 cut(s)	366, 397, 466, 966
DdeI	CTNAG	4 cut(s)	73, 372, 801, 1078
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	2 cut(s)	289, 560
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	1043
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	1281
Eco72I	CACGTG	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	801
EcoRII	CCWGG	2 cut(s)	1063, 1296
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	1043
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	2 cut(s)	154, 208
FaeI	CATG	5 cut(s)	451, 745, 788, 1021, 1252
FaqI	GGGAC	1 cut(s)	1248
FatI	CATG	5 cut(s)	447, 741, 784, 1017, 1248
FauI	CCCGC	1 cut(s)	204
FblI	GTMKAC	2 cut(s)	996, 1111
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	396, 661
FriOI	GRGCYC	1 cut(s)	1043
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	828, 1215
GlaI	GCGC	2 cut(s)	157, 170
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	884
HapII	CCGG	3 cut(s)	186, 713, 953
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	158, 171
Hin1II	CATG	5 cut(s)	451, 745, 788, 1021, 1252
Hin6I	GCGC	2 cut(s)	156, 169
HinP1I	GCGC	2 cut(s)	156, 169
HinfI	GANTC	6 cut(s)	8, 142, 257, 520, 718, 1211
HpaII	CCGG	3 cut(s)	186, 713, 953
HphI	GGTGA	6 cut(s)	368, 467, 713, 727, 942, 1143
Hpy166II	GTNNAC	5 cut(s)	478, 811, 997, 1112, 1220
Hpy188III	TCNNGA	9 cut(s)	82, 106, 118, 226, 413, 517, 1056, 1144, 1280
Hpy8I	GTNNAC	5 cut(s)	478, 811, 997, 1112, 1220
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	5 cut(s)	57, 452, 544, 782, 1029
HpyCH4III	ACNGT	7 cut(s)	232, 470, 500, 632, 701, 815, 1001
HpyCH4IV	ACGT	5 cut(s)	360, 427, 728, 912, 1114
HpyCH4V	TGCA	4 cut(s)	811, 962, 1106, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 153, 632
HpyF3I	CTNAG	4 cut(s)	73, 372, 801, 1078
HpySE526I	ACGT	5 cut(s)	360, 427, 728, 912, 1114
Hsp92II	CATG	5 cut(s)	451, 745, 788, 1021, 1252
HspAI	GCGC	2 cut(s)	156, 169
LmnI	GCTCC	3 cut(s)	188, 685, 1038
LweI	GCATC	1 cut(s)	639
MaeI	CTAG	2 cut(s)	828, 1215
MaeII	ACGT	5 cut(s)	360, 427, 728, 912, 1114
MaeIII	GTNAC	4 cut(s)	356, 693, 830, 913
MbiI	CCGCTC	2 cut(s)	199, 354
MboII	GAAGA	5 cut(s)	115, 121, 757, 1133, 1274
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	2 cut(s)	409, 896
MhlI	GDGCHC	3 cut(s)	637, 813, 1043
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	2 cut(s)	239, 576
MluNI	TGGCCA	1 cut(s)	884
MlyI	GAGTC	3 cut(s)	2, 727, 1205
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	8 cut(s)	43, 137, 367, 455, 732, 1164, 1167, 1249
Mox20I	TGGCCA	1 cut(s)	884
MroXI	GAANNNNTTC	2 cut(s)	554, 1266
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	2 cut(s)	174, 528
MslI	CAYNNNNRTG	3 cut(s)	702, 816, 1247
Msp20I	TGGCCA	1 cut(s)	884
MspI	CCGG	3 cut(s)	186, 713, 953
MspR9I	CCNGG	2 cut(s)	1065, 1298
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	1065, 1298
MvnI	CGCG	5 cut(s)	83, 147, 156, 171, 860
MwoI	GCNNNNNNNGC	3 cut(s)	144, 153, 632
NlaIII	CATG	5 cut(s)	451, 745, 788, 1021, 1252
NlaIV	GGNNCC	1 cut(s)	1040
NmuCI	GTSAC	2 cut(s)	356, 913
NruI	TCGCGA	1 cut(s)	83
NspI	RCATGY	1 cut(s)	1252
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	1 cut(s)	171
PdmI	GAANNNNTTC	2 cut(s)	554, 1266
PfeI	GAWTC	3 cut(s)	142, 257, 520
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	3 cut(s)	2, 726, 1205
PmaCI	CACGTG	1 cut(s)	428
PmlI	CACGTG	1 cut(s)	428
PpsI	GAGTC	3 cut(s)	2, 726, 1205
Ppu21I	YACGTR	3 cut(s)	428, 729, 913
Psp6I	CCWGG	2 cut(s)	1063, 1296
PspCI	CACGTG	1 cut(s)	428
PspGI	CCWGG	2 cut(s)	1063, 1296
PspN4I	GGNNCC	1 cut(s)	1040
PspPI	GGNCC	1 cut(s)	710
PsuI	RGATCY	2 cut(s)	409, 896
RruI	TCGCGA	1 cut(s)	83
RsaI	GTAC	4 cut(s)	367, 398, 467, 967
RsaNI	GTAC	4 cut(s)	366, 397, 466, 966
RseI	CAYNNNNRTG	3 cut(s)	702, 816, 1247
SaqAI	TTAA	2 cut(s)	174, 528
SatI	GCNGC	1 cut(s)	510
Sau96I	GGNCC	1 cut(s)	710
ScaI	AGTACT	1 cut(s)	967
SchI	GAGTC	3 cut(s)	2, 727, 1205
ScrFI	CCNGG	2 cut(s)	1065, 1298
SduI	GDGCHC	3 cut(s)	637, 813, 1043
SfaNI	GCATC	1 cut(s)	639
SfcI	CTRYAG	1 cut(s)	997
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	3 cut(s)	702, 816, 1247
SmlI	CTYRAG	1 cut(s)	1253
SmoI	CTYRAG	1 cut(s)	1253
Sse9I	AATT	2 cut(s)	239, 576
SsiI	CCGC	7 cut(s)	197, 300, 354, 510, 545, 739, 1061
SspMI	CTAG	2 cut(s)	828, 1215
StyD4I	CCNGG	2 cut(s)	1063, 1296
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	7 cut(s)	232, 470, 500, 632, 701, 815, 1001
TaiI	ACGT	5 cut(s)	363, 430, 731, 915, 1117
TaqI	TCGA	4 cut(s)	191, 350, 843, 1307
TasI	AATT	2 cut(s)	239, 576
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	3 cut(s)	142, 257, 520
Tru1I	TTAA	2 cut(s)	174, 528
Tru9I	TTAA	2 cut(s)	174, 528
TscAI	CASTG	2 cut(s)	637, 695
TseFI	GTSAC	2 cut(s)	356, 913
Tsp45I	GTSAC	2 cut(s)	356, 913
TspDTI	ATGAA	6 cut(s)	88, 232, 675, 758, 801, 1088
TspGWI	ACGGA	2 cut(s)	40, 1265
TspRI	CASTG	2 cut(s)	637, 695
VneI	GTGCAC	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	1252
XmiI	GTMKAC	2 cut(s)	996, 1111
XmnI	GAANNNNTTC	2 cut(s)	554, 1266
XspI	CTAG	2 cut(s)	828, 1215
ZrmI	AGTACT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.