Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006729

Physical Location & Seq

Genomic Coordinates Reverse (-)

6755591 .. 6756717

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAAATCGCCATCGGGACAGCAAAAGGGCTGGCCTATTTGCATGAAGGGTTAGAACCCAAGGTGGTGCACCGGGATATAAAATCCAGTAACATTCTTCTGGATAGAAAGTGGAACGCAAAAGTATCAGATTTTGGTCTGGCCAAGCTCTTAGGATCGGAGGCAAGCTATGTGACTACACGCGTTATGGGGACATTTGGATATGTAGCTCCAGAATATGCAAGCACGGGTATGCTTAACGAGGGGAGTGATGTATATAGTTTCGGAGTTCTACTAATGGAGATAATTACAGGAAGAAACCCAATTGACTATTCCAAACCAGCAGGAGAGATGAACCTGGTTGATTGGTTTAAAGGAATGATCCAAAGTCGCCGTGGAGAGGATGTTGTTGATCCTCTGATTGCAGTTCAGCCCCCTCCAAGAGCCATGAAGCGAGTATTGCTGGTTTGTCTCCGATGTATAGATCTAGATGTCCATAAGCGACCGAAAATGGGGCAAATTGTTCATATGCTTGAGGCAGATGACTTCCCTTTTCGTTCAGAAACACGATCAGCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

187

Amino Acids

20.75

Weight (kDa)

8.85

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34500
fragaria_vesca	FvH4_2g08720 FvH4_2g08720 FvH4_2g08720
malus_domestica	MD05G1067100.v1.1 MD10G1076700.v1.1
prunus_persica	Prupe.8G097500_v2.0.a1
pyrus_communis	pycom05g05790 pycom10g06000
rosa_chinensis	RchiOBHm_Chr6g0264191
rosa_laevigata	RLG00000014281
rosa_multiflora	Rmu_sc0005325.1_g000012 Rmu_sc0007214.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431530 Rroxscaffold_176G00431580 Rroxscaffold_4G00299000 Rroxscaffold_7G00203440
rosa_rugosa	Rorug06G0009700 Rorug06G0009800
rosa_samantha	Rh6AG130100 Rh6BG125900 Rh6BG126900 Rh6BG127300 Rh6CG125800 Rh6DG112600
rosa_wichuraiana	Rw6G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	183
AclWI	GGATC	3 cut(s)	163, 355, 386
AcoI	YGGCCR	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	379, 491
AflIII	ACRYGT	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AluBI	AGCT	4 cut(s)	148, 168, 209, 554
AluI	AGCT	4 cut(s)	148, 168, 209, 554
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	455
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	163, 355, 386
AoxI	GGCC	2 cut(s)	33, 141
ApaLI	GTGCAC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	467
BglII	AGATCT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	74, 338
BmrFI	CCNGG	2 cut(s)	74, 338
BpmI	CTGGAG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	60, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 491
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	60, 373
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	379, 491
BseNI	ACTGG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	2 cut(s)	35, 143
BsiEI	CGRYCG	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	31, 205
BslI	CCNNNNNNNGG	2 cut(s)	379, 491
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	2 cut(s)	31, 205
BsnI	GGCC	2 cut(s)	35, 143
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	155, 360, 391, 463, 548
BspANI	GGCC	2 cut(s)	35, 143
BspFNI	CGCG	1 cut(s)	183
BspPI	GGATC	3 cut(s)	163, 355, 386
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	60, 373
BssMI	GATC	5 cut(s)	155, 360, 391, 463, 548
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	33, 166, 223
BstDEI	CTNAG	1 cut(s)	151
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	5 cut(s)	158, 363, 394, 466, 551
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	5 cut(s)	155, 360, 391, 463, 548
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	72, 336
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	35, 143
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	33, 166, 223
CsiI	ACCWGGT	1 cut(s)	336
CviAII	CATG	2 cut(s)	44, 427
CviJI	RGCY	9 cut(s)	31, 35, 143, 148, 168, 209, 412, 425, 554
CviKI_1	RGCY	9 cut(s)	31, 35, 143, 148, 168, 209, 412, 425, 554
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	5 cut(s)	157, 362, 393, 465, 550
DpnII	GATC	5 cut(s)	155, 360, 391, 463, 548
DraI	TTTAAA	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	47, 430
FaqI	GGGAC	2 cut(s)	31, 205
FatI	CATG	2 cut(s)	43, 426
FauNDI	CATATG	1 cut(s)	507
FokI	GGATG	1 cut(s)	395
FspBI	CTAG	1 cut(s)	467
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	35, 143
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	2 cut(s)	47, 430
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	6 cut(s)	130, 160, 266, 399, 455, 541
Hpy188III	TCNNGA	4 cut(s)	16, 101, 212, 467
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	43, 70, 221, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	47, 430
Kzo9I	GATC	5 cut(s)	155, 360, 391, 463, 548
LmnI	GCTCC	1 cut(s)	214
MabI	ACCWGGT	1 cut(s)	336
MaeI	CTAG	1 cut(s)	467
MaeIII	GTNAC	2 cut(s)	89, 172
MalI	GATC	5 cut(s)	157, 362, 393, 465, 550
MboI	GATC	5 cut(s)	155, 360, 391, 463, 548
MboII	GAAGA	2 cut(s)	89, 306
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	285, 303, 498
MluI	ACGCGT	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	6 cut(s)	154, 235, 373, 405, 426, 508
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	237, 351
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	74, 338
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	439
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	5 cut(s)	155, 360, 391, 463, 548
NlaIII	CATG	2 cut(s)	47, 430
NmuCI	GTSAC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	237, 351
Sau3AI	GATC	5 cut(s)	155, 360, 391, 463, 548
ScrFI	CCNGG	2 cut(s)	74, 338
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	6 cut(s)	66, 150, 170, 211, 339, 556
SexAI	ACCWGGT	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	285, 303, 498
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	72, 336
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	556
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	3 cut(s)	285, 303, 498
Tru1I	TTAA	2 cut(s)	237, 351
Tru9I	TTAA	2 cut(s)	237, 351
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	5 cut(s)	17, 60, 347, 443, 494
VneI	GTGCAC	1 cut(s)	68
XbaI	TCTAGA	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.