Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005325.1

Orthogroup ID

OG0006729

Physical Location & Seq

Genomic Coordinates Reverse (-)

31248 .. 33006

Gene Structure 1759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005325.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 772 bp

tcttatatataggggtcaagctcagacagagtttaaggtggaagtggaagccataggaaaagtaaagcataagaacttggttggtctaattggttattgtgcagaaggtgctcaaaggatgcttgtatatgaatatattgacaatgggaatttggagcagtggttgcatggtgatgttgggcctgtcagccctctgacttgggatatcagaatgaagatagccattggaaccgcaaaagggctggcctatttacatgaagggttagaacccaaagtggtgcaccgtgatataaaatccagtaacattcttctggacagaaagtggaatgcaagagtatcagattttggcttggccaaactcttgggacctgagtcaagctatgtgactacacgtgtaatgggaacattcggatatgtttctccagagtatgcaagcacaggtatgcttaatgaggggagtgatgtatatagttttggagttctacttatggagataattacaggaagaagcccaattgactattccagaccagctggagagatgaacctggttgattggtttaaaggaatgatttcaagtcgccgtggggaggagattttagatccattgatagaagttcagccccctccaagatctttgaagcgagcattgttggtttgtctccactgtatagatttagatgtccataagcggccaaaaatggggcaaattgttcatatgcttgaggcagaagactttccttttcgttcggaaacccgatcagctcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

256

Amino Acids

28.76

Weight (kDa)

6.73

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34500
fragaria_vesca	FvH4_2g08720 FvH4_2g08720 FvH4_2g08720
malus_domestica	MD05G1067100.v1.1 MD10G1076700.v1.1
prunus_persica	Prupe.8G097500_v2.0.a1
pyrus_communis	pycom05g05790 pycom10g06000
rosa_chinensis	RchiOBHm_Chr6g0264191
rosa_laevigata	RLG00000014281
rosa_multiflora	Rmu_sc0005325.1_g000012 Rmu_sc0007214.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431530 Rroxscaffold_176G00431580 Rroxscaffold_4G00299000 Rroxscaffold_7G00203440
rosa_rugosa	Rorug06G0009700 Rorug06G0009800
rosa_samantha	Rh6AG130100 Rh6BG125900 Rh6BG126900 Rh6BG127300 Rh6CG125800 Rh6DG112600
rosa_wichuraiana	Rw6G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	232, 692
AclWI	GGATC	1 cut(s)	597
AcoI	YGGCCR	2 cut(s)	352, 693
AcsI	RAATTY	1 cut(s)	149
AcvI	CACGTG	1 cut(s)	393
AfiI	CCNNNNNNNGG	3 cut(s)	238, 590, 702
AflIII	ACRYGT	2 cut(s)	390, 392
AgsI	TTSAA	2 cut(s)	577, 641
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	4 cut(s)	21, 379, 534, 765
AluI	AGCT	4 cut(s)	21, 379, 534, 765
Alw21I	GWGCWC	2 cut(s)	113, 283
Alw26I	GTCTC	1 cut(s)	666
Alw44I	GTGCAC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	597
AoxI	GGCC	4 cut(s)	180, 244, 352, 693
ApaLI	GTGCAC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	149
Asp700I	GAANNNNTTC	2 cut(s)	572, 736
AspS9I	GGNCC	2 cut(s)	180, 366
AsuHPI	GGTGA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	739
Bbv12I	GWGCWC	2 cut(s)	113, 283
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	666
BglII	AGATCT	1 cut(s)	633
BisI	GCNGC	1 cut(s)	693
BlsI	GCNGC	1 cut(s)	694
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	180, 366
BmiI	GGNNCC	2 cut(s)	230, 367
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	739
BpmI	CTGGAG	2 cut(s)	406, 556
BpuEI	CTTGAG	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 590, 702
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	584
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	238, 590, 702
BseMII	CTCAG	2 cut(s)	36, 361
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	606
BseSI	GKGCMC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	182, 246, 354, 695
BsiHKAI	GWGCWC	2 cut(s)	113, 283
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	3 cut(s)	238, 590, 702
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	4 cut(s)	182, 246, 354, 695
Bsp1286I	GDGCHC	2 cut(s)	113, 283
Bsp143I	GATC	3 cut(s)	602, 633, 759
BspACI	CCGC	2 cut(s)	232, 692
BspANI	GGCC	4 cut(s)	182, 246, 354, 695
BspCNI	CTCAG	2 cut(s)	35, 362
BspLI	GGNNCC	2 cut(s)	230, 367
BspPI	GGATC	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	3 cut(s)	602, 633, 759
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	2 cut(s)	285, 669
BstAPI	GCANNNNNTGC	2 cut(s)	108, 164
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	244, 434, 646
BstDEI	CTNAG	2 cut(s)	22, 370
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	3 cut(s)	605, 636, 762
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	3 cut(s)	602, 633, 759
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 164
BstNI	CCWGG	1 cut(s)	549
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	547
BstSLI	GKGCMC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	739
BstX2I	RGATCY	2 cut(s)	602, 633
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	2 cut(s)	602, 633
BsuRI	GGCC	4 cut(s)	182, 246, 354, 695
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	165, 665
Cac8I	GCNNGC	3 cut(s)	244, 434, 646
Cfr13I	GGNCC	2 cut(s)	180, 366
CsiI	ACCWGGT	1 cut(s)	547
CviAII	CATG	2 cut(s)	168, 255
DdeI	CTNAG	2 cut(s)	22, 370
DpnI	GATC	3 cut(s)	604, 635, 761
DpnII	GATC	3 cut(s)	602, 633, 759
DraI	TTTAAA	1 cut(s)	563
EaeI	YGGCCR	2 cut(s)	352, 693
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	206
FaeI	CATG	2 cut(s)	171, 258
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	2 cut(s)	167, 254
FauNDI	CATATG	1 cut(s)	718
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	693
GluI	GCNGC	1 cut(s)	693
GsuI	CTGGAG	2 cut(s)	406, 556
HaeIII	GGCC	4 cut(s)	182, 246, 354, 695
Hin1II	CATG	2 cut(s)	171, 258
HinfI	GANTC	1 cut(s)	372
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	6 cut(s)	25, 196, 210, 341, 411, 752
Hpy188III	TCNNGA	3 cut(s)	312, 423, 526
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	99, 252
HpyCH4III	ACNGT	2 cut(s)	285, 669
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	5 cut(s)	102, 167, 281, 330, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 164
HpyF3I	CTNAG	2 cut(s)	22, 370
HpySE526I	ACGT	1 cut(s)	392
Hsp92II	CATG	2 cut(s)	171, 258
Kzo9I	GATC	3 cut(s)	602, 633, 759
LmnI	GCTCC	1 cut(s)	155
LweI	GCATC	1 cut(s)	109
MabI	ACCWGGT	1 cut(s)	547
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	300, 383
MalI	GATC	3 cut(s)	604, 635, 761
MboI	GATC	3 cut(s)	602, 633, 759
MboII	GAAGA	4 cut(s)	227, 300, 517, 744
MfeI	CAATTG	1 cut(s)	514
MflI	RGATCY	2 cut(s)	602, 633
MhlI	GDGCHC	2 cut(s)	113, 283
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	5 cut(s)	88, 149, 496, 514, 709
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	5 cut(s)	202, 446, 584, 637, 719
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	2 cut(s)	572, 736
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	3 cut(s)	34, 448, 562
MslI	CAYNNNNRTG	2 cut(s)	172, 441
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	549
MunI	CAATTG	1 cut(s)	514
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	108, 164
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	3 cut(s)	602, 633, 759
NlaIII	CATG	2 cut(s)	171, 258
NlaIV	GGNNCC	2 cut(s)	230, 367
NmuCI	GTSAC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	2 cut(s)	572, 736
PkrI	GCNGC	1 cut(s)	694
PleI	GAGTC	1 cut(s)	380
PmaCI	CACGTG	1 cut(s)	393
PmlI	CACGTG	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	380
Ppu21I	YACGTR	1 cut(s)	393
PpuMI	RGGWCCY	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	547
PspCI	CACGTG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	230, 367
PspPI	GGNCC	2 cut(s)	180, 366
PspPPI	RGGWCCY	1 cut(s)	366
PsuI	RGATCY	2 cut(s)	602, 633
PvuII	CAGCTG	1 cut(s)	534
RseI	CAYNNNNRTG	2 cut(s)	172, 441
SaqAI	TTAA	3 cut(s)	34, 448, 562
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	3 cut(s)	602, 633, 759
Sau96I	GGNCC	2 cut(s)	180, 366
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	113, 283
SexAI	ACCWGGT	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	172, 441
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	5 cut(s)	88, 149, 496, 514, 709
SsiI	CCGC	2 cut(s)	232, 692
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	2 cut(s)	285, 669
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	767
TasI	AATT	5 cut(s)	88, 149, 496, 514, 709
TauI	GCSGC	1 cut(s)	695
Tru1I	TTAA	3 cut(s)	34, 448, 562
Tru9I	TTAA	3 cut(s)	34, 448, 562
TscAI	CASTG	2 cut(s)	165, 672
TseFI	GTSAC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	5 cut(s)	145, 228, 271, 558, 705
TspRI	CASTG	2 cut(s)	165, 672
VneI	GTGCAC	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	149
XmnI	GAANNNNTTC	2 cut(s)	572, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.