Rroxscaffold_176G00431580
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
Physical Location & Seq
Reverse (-)
1400800 .. 1405212
4413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431580.1

Sequence Viewer

Length: 1224 bp
ATGTCGGCGTCCGGCGACTCTGGCGACGAGATTCCGTCTCCGAACACCTCGCTCTCCCACAAGTTGACCTCCAAAACCGAGCTCCTCAACCTCAAGCTCTACGTCGTGATCGCAATCCTCCTCGCCGGCGTCTTCGCCGCGTTCCTCCTCGTCTTCCTCTGCGTCCGCGCCCATCGCGTTTCGCGTCGCCGGAAGAGCCGCATCCGCGTGAAGCACAGCTCCGGCTCAATCCCGCTCGTCTCCAAAGAGATCGCCGAGATCAAGGAGCCTCGTCTGGATCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTGCCGCCGCCGCTGCCGAGGGCAAAATCGGAAACCAAAAGTTGAAGGAAGCACGACCGACTGAACTGACCGTTGATGTGGAAAATGGGAAAGGGGGAGCGGGGAGAGTGACGTGTTCGGGAGGGTACGGCGTCGTTTACCGGGGATCTTTGCAAGACGGCTCTGTTGTCGCCGTCAAGAACCTTCTTAATAACAAATCGAAGCTGTGCAGGTGCAGTAGGGGTCAAGCTCAGACAGAGTTTAAGGTGGAAGTGGAAGCCATAGGAAAAGTAAAGCATAAGAACTTGGTTGGTCTAATTGGTTATTGTGCAGAAGGTGCTCAAAGGATGCTTGTATATGAATATATTGACAATGGGAATTTGGAGCAGTGGTTGCATGGTGATGTTGGGCCTGTCAGCCCTCTGACTTGGGATATCAGAATGAAGATAGCCATTGGAACTGCAAAAGGGTGTGATAATTTTCTCTTCTCCTTGTTCAGTTCAGCTGTTCTGATGCTTAAAAGCAAAGCTAGCTATAAGCTGGCCTATTTACATGAAGGGTTAGAACCCAAAGTGGTGCACCGTGATATAAAATCCAGTAACATTCTTCTGGACAGAAAGTGGAACCCAAGAGTATCAGATTTTGGTTTGGCCAAACTCTTGGGACCTGAGTCAAGCTATGTGACTACACGTGTAATGGGGACATTCGGATATGTTTCTCCAGAGTATGCAAGTACAGGTATGCTTAATGAGGGGAGTGATGTATATAGTTTTGGAGTTCTACTTATGGAGATAATTACAGGAAGAAGCCCAATTGACTATTCCAGACCAGCCGGAGAGATGAACCTGGTTGATTGGTTTAAAGGAAAGATTTCAAGTCGCCGTGGGGAGGAGATTTTAGATCCATTGATAGAAGTTCAGCCCCTCCAAGAGCTTTGA

Protein Analysis

407

Amino Acids

44.41

Weight (kDa)

9.17

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 142 - 369 3.1e-33 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 142 - 368 4.3e-34 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 507
AccBSI CCGCTC 2 cut(s) 235, 407
AccII CGCG 5 cut(s) 140, 168, 177, 184, 207
AciI CCGC 9 cut(s) 138, 166, 199, 205, 233, 312, 315, 318, 407
AclWI GGATC 4 cut(s) 272, 285, 460, 1181
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 1 cut(s) 664
AcvI CACGTG 1 cut(s) 977
AcyI GRCGYC 3 cut(s) 8, 129, 438
AfaI GTAC 2 cut(s) 434, 1021
AfiI CCNNNNNNNGG 1 cut(s) 1174
AflIII ACRYGT 3 cut(s) 419, 974, 976
AgsI TTSAA 2 cut(s) 352, 1161
AjiI CACGTC 1 cut(s) 420
AjnI CCWGG 1 cut(s) 1131
AjuI GAANNNNNNNTTGG 2 cut(s) 1090, 1122
Alw21I GWGCWC 3 cut(s) 84, 628, 867
Alw26I GTCTC 2 cut(s) 42, 244
Alw44I GTGCAC 1 cut(s) 863
AlwI GGATC 4 cut(s) 272, 285, 460, 1181
AoxI GGCC 3 cut(s) 695, 828, 936
ApaLI GTGCAC 1 cut(s) 863
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 1156
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 695, 950
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 698
AsuNHI GCTAGC 1 cut(s) 815
AvaII GGWCC 1 cut(s) 950
BaeGI GKGCMC 1 cut(s) 867
BalI TGGCCA 1 cut(s) 938
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 84
BbrPI CACGTG 1 cut(s) 977
BbsI GAAGAC 2 cut(s) 124, 145
Bbv12I GWGCWC 3 cut(s) 84, 628, 867
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 180
BceAI ACGGC 4 cut(s) 451, 464, 481, 1152
BciT130I CCWGG 1 cut(s) 1133
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 2 cut(s) 42, 244
BfaI CTAG 1 cut(s) 816
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 6 cut(s) 138, 199, 312, 315, 318, 321
BlsI GCNGC 6 cut(s) 139, 200, 313, 316, 319, 322
Bme1390I CCNGG 2 cut(s) 449, 1133
Bme18I GGWCC 1 cut(s) 950
BmgBI CACGTC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 695, 950
BmiI GGNNCC 4 cut(s) 267, 279, 911, 951
BmrFI CCNGG 2 cut(s) 449, 1133
BmsI GCATC 3 cut(s) 210, 624, 789
BmtI GCTAGC 1 cut(s) 819
BoxI GACNNNNGTC 1 cut(s) 955
BpiI GAAGAC 2 cut(s) 124, 145
BpmI CTGGAG 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 449
BsaAI YACGTR 1 cut(s) 977
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 3 cut(s) 8, 129, 438
BsaJI CCNNGG 3 cut(s) 324, 448, 1168
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 1174
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 1 cut(s) 1133
BseDI CCNNGG 3 cut(s) 324, 448, 1168
BseGI GGATG 2 cut(s) 201, 639
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 1174
BseMII CTCAG 2 cut(s) 551, 945
BseNI ACTGG 1 cut(s) 882
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 3 cut(s) 535, 541, 636
Bsh1236I CGCG 5 cut(s) 140, 168, 177, 184, 207
Bsh1285I CGRYCG 1 cut(s) 365
BshFI GGCC 3 cut(s) 697, 830, 938
BsiEI CGRYCG 1 cut(s) 365
BsiHKAI GWGCWC 3 cut(s) 84, 628, 867
BsiSI CCGG 6 cut(s) 12, 126, 190, 222, 448, 1119
BslFI GGGAC 2 cut(s) 963, 1000
BslI CCNNNNNNNGG 1 cut(s) 1174
BsmAI GTCTC 2 cut(s) 42, 244
BsmBI CGTCTC 2 cut(s) 42, 244
BsmFI GGGAC 2 cut(s) 963, 1000
BsnI GGCC 3 cut(s) 697, 830, 938
Bsp1286I GDGCHC 3 cut(s) 84, 628, 867
Bsp143I GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
BspACI CCGC 9 cut(s) 138, 166, 199, 205, 233, 312, 315, 318, 407
BspANI GGCC 3 cut(s) 697, 830, 938
BspCNI CTCAG 2 cut(s) 550, 946
BspFNI CGCG 5 cut(s) 140, 168, 177, 184, 207
BspLI GGNNCC 4 cut(s) 267, 279, 911, 951
BspMI ACCTGC 1 cut(s) 507
BspOI GCTAGC 1 cut(s) 819
BspPI GGATC 4 cut(s) 272, 285, 460, 1181
BspQI GCTCTTC 1 cut(s) 188
BsrBI CCGCTC 2 cut(s) 235, 407
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 882
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 324, 448, 1168
BssMI GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
BssNI GRCGYC 3 cut(s) 8, 129, 438
Bst2UI CCWGG 1 cut(s) 1133
Bst4CI ACNGT 2 cut(s) 379, 869
Bst6I CTCTTC 2 cut(s) 188, 776
BstACI GRCGYC 3 cut(s) 8, 129, 438
BstAPI GCANNNNNTGC 2 cut(s) 623, 679
BstBAI YACGTR 1 cut(s) 977
BstC8I GCNNGC 3 cut(s) 127, 817, 828
BstDEI CTNAG 2 cut(s) 537, 954
BstDSI CCRYGG 1 cut(s) 1168
BstF5I GGATG 2 cut(s) 201, 639
BstFNI CGCG 5 cut(s) 140, 168, 177, 184, 207
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 6 cut(s) 111, 252, 261, 280, 455, 1189
BstMAI GTCTC 2 cut(s) 42, 244
BstMBI GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
BstMCI CGRYCG 1 cut(s) 365
BstMWI GCNNNNNNNGC 9 cut(s) 21, 174, 195, 204, 317, 320, 623, 679, 816
BstNI CCWGG 1 cut(s) 1133
BstPAI GACNNNNGTC 1 cut(s) 955
BstSCI CCNGG 2 cut(s) 447, 1131
BstSLI GKGCMC 1 cut(s) 867
BstUI CGCG 5 cut(s) 140, 168, 177, 184, 207
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 2 cut(s) 124, 145
BstX2I RGATCY 3 cut(s) 277, 452, 1186
BstXI CCANNNNNNTGG 1 cut(s) 946
BstYI RGATCY 3 cut(s) 277, 452, 1186
BsuRI GGCC 3 cut(s) 697, 830, 938
BtgI CCRYGG 1 cut(s) 1168
BtgZI GCGATG 1 cut(s) 158
BtrI CACGTC 1 cut(s) 420
BtsCI GGATG 2 cut(s) 201, 639
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 1 cut(s) 680
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 127, 817, 828
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 695, 950
CseI GACGC 4 cut(s) 118, 151, 173, 427
CsiI ACCWGGT 1 cut(s) 1131
Csp6I GTAC 2 cut(s) 433, 1020
CviAII CATG 2 cut(s) 683, 839
CviQI GTAC 2 cut(s) 433, 1020
DdeI CTNAG 2 cut(s) 537, 954
DpnI GATC 6 cut(s) 110, 251, 260, 279, 454, 1188
DpnII GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
DraI TTTAAA 1 cut(s) 1147
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 188, 776
EarI CTCTTC 2 cut(s) 188, 776
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 950
Eco53kI GAGCTC 1 cut(s) 82
Eco72I CACGTG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 950
EcoRII CCWGG 1 cut(s) 1131
EcoRV GATATC 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 84
Esp3I CGTCTC 2 cut(s) 42, 244
FaeI CATG 2 cut(s) 686, 842
FaqI GGGAC 2 cut(s) 963, 1000
FatI CATG 2 cut(s) 682, 838
FauI CCCGC 2 cut(s) 240, 400
Fnu4HI GCNGC 6 cut(s) 138, 199, 312, 315, 318, 321
FokI GGATG 2 cut(s) 188, 646
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 6 cut(s) 138, 199, 312, 315, 318, 321
FspBI CTAG 1 cut(s) 816
GlaI GCGC 1 cut(s) 169
GluI GCNGC 6 cut(s) 138, 199, 312, 315, 318, 321
GsuI CTGGAG 1 cut(s) 990
HaeIII GGCC 3 cut(s) 697, 830, 938
HapII CCGG 6 cut(s) 12, 126, 190, 222, 448, 1119
HgaI GACGC 4 cut(s) 118, 151, 173, 427
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 3 cut(s) 8, 129, 438
Hin1II CATG 2 cut(s) 686, 842
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 3 cut(s) 17, 31, 956
HpaII CCGG 6 cut(s) 12, 126, 190, 222, 448, 1119
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 3 cut(s) 66, 445, 865
Hpy188I TCNGA 8 cut(s) 42, 338, 540, 711, 725, 798, 925, 995
Hpy188III TCNNGA 7 cut(s) 106, 275, 426, 484, 896, 1007, 1110
Hpy8I GTNNAC 3 cut(s) 66, 445, 865
Hpy99I CGWCG 4 cut(s) 29, 107, 189, 443
HpyAV CCTTC 4 cut(s) 346, 500, 614, 836
HpyCH4III ACNGT 2 cut(s) 379, 869
HpyCH4IV ACGT 3 cut(s) 102, 419, 976
HpyCH4V TGCA 8 cut(s) 460, 516, 522, 617, 682, 749, 865, 1016
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 174, 195, 204, 317, 320, 623, 679, 816
HpyF3I CTNAG 2 cut(s) 537, 954
HpySE526I ACGT 3 cut(s) 102, 419, 976
Hsp92I GRCGYC 3 cut(s) 8, 129, 438
Hsp92II CATG 2 cut(s) 686, 842
HspAI GCGC 1 cut(s) 168
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 5 cut(s) 87, 224, 265, 404, 670
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 3 cut(s) 210, 624, 789
MabI ACCWGGT 1 cut(s) 1131
MaeI CTAG 1 cut(s) 816
MaeII ACGT 3 cut(s) 102, 419, 976
MaeIII GTNAC 3 cut(s) 415, 884, 967
MalI GATC 6 cut(s) 110, 251, 260, 279, 454, 1188
MbiI CCGCTC 2 cut(s) 235, 407
MboI GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
MboII GAAGA 7 cut(s) 124, 145, 205, 742, 763, 884, 1101
MfeI CAATTG 1 cut(s) 1098
MflI RGATCY 3 cut(s) 277, 452, 1186
MhlI GDGCHC 3 cut(s) 84, 628, 867
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 5 cut(s) 603, 664, 763, 1080, 1098
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 2 cut(s) 11, 965
Mox20I TGGCCA 1 cut(s) 938
MreI CGCCGGCG 1 cut(s) 125
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 1156
MscI TGGCCA 1 cut(s) 938
MseI TTAA 5 cut(s) 495, 549, 804, 1032, 1146
MslI CAYNNNNRTG 2 cut(s) 206, 687
Msp20I TGGCCA 1 cut(s) 938
MspA1I CMGCKG 2 cut(s) 320, 791
MspI CCGG 6 cut(s) 12, 126, 190, 222, 448, 1119
MspR9I CCNGG 2 cut(s) 449, 1133
MunI CAATTG 1 cut(s) 1098
MvaI CCWGG 1 cut(s) 1133
MvnI CGCG 5 cut(s) 140, 168, 177, 184, 207
MwoI GCNNNNNNNGC 9 cut(s) 21, 174, 195, 204, 317, 320, 623, 679, 816
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 449
NdeII GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
NgoMIV GCCGGC 1 cut(s) 125
NheI GCTAGC 1 cut(s) 815
NlaIII CATG 2 cut(s) 686, 842
NlaIV GGNNCC 4 cut(s) 267, 279, 911, 951
NmeAIII GCCGAG 2 cut(s) 280, 349
NmuCI GTSAC 2 cut(s) 415, 967
PaqCI CACCTGC 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 1156
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 6 cut(s) 139, 200, 313, 316, 319, 322
PleI GAGTC 2 cut(s) 11, 964
PmaCI CACGTG 1 cut(s) 977
PmlI CACGTG 1 cut(s) 977
PpsI GAGTC 2 cut(s) 11, 964
Ppu21I YACGTR 1 cut(s) 977
PpuMI RGGWCCY 1 cut(s) 950
PshAI GACNNNNGTC 1 cut(s) 955
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 950
Psp6I CCWGG 1 cut(s) 1131
PspCI CACGTG 1 cut(s) 977
PspGI CCWGG 1 cut(s) 1131
PspN4I GGNNCC 4 cut(s) 267, 279, 911, 951
PspPI GGNCC 2 cut(s) 695, 950
PspPPI RGGWCCY 1 cut(s) 950
PsuI RGATCY 3 cut(s) 277, 452, 1186
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 2 cut(s) 434, 1021
RsaNI GTAC 2 cut(s) 433, 1020
RseI CAYNNNNRTG 2 cut(s) 206, 687
SacI GAGCTC 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 5 cut(s) 495, 549, 804, 1032, 1146
SatI GCNGC 6 cut(s) 138, 199, 312, 315, 318, 321
Sau3AI GATC 6 cut(s) 108, 249, 258, 277, 452, 1186
Sau96I GGNCC 2 cut(s) 695, 950
SchI GAGTC 2 cut(s) 11, 965
ScrFI CCNGG 2 cut(s) 449, 1133
SduI GDGCHC 3 cut(s) 84, 628, 867
SexAI ACCWGGT 1 cut(s) 1131
SfaNI GCATC 3 cut(s) 210, 624, 789
SgrAI CRCCGGYG 1 cut(s) 125
SinI GGWCC 1 cut(s) 950
SmiMI CAYNNNNRTG 2 cut(s) 206, 687
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 5 cut(s) 603, 664, 763, 1080, 1098
SsiI CCGC 9 cut(s) 138, 166, 199, 205, 233, 312, 315, 318, 407
SspMI CTAG 1 cut(s) 816
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 447, 1131
TaaI ACNGT 2 cut(s) 379, 869
TaiI ACGT 3 cut(s) 105, 422, 979
TaqI TCGA 1 cut(s) 506
TaqII GACCGA 1 cut(s) 379
TasI AATT 5 cut(s) 603, 664, 763, 1080, 1098
TatI WGTACW 1 cut(s) 1019
TauI GCSGC 5 cut(s) 140, 201, 314, 317, 320
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 5 cut(s) 495, 549, 804, 1032, 1146
Tru9I TTAA 5 cut(s) 495, 549, 804, 1032, 1146
TscAI CASTG 1 cut(s) 680
TseFI GTSAC 2 cut(s) 415, 967
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 2 cut(s) 415, 967
TspDTI ATGAA 4 cut(s) 660, 743, 855, 1142
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 680
VneI GTGCAC 1 cut(s) 863
VpaK11BI GGWCC 1 cut(s) 950
XapI RAATTY 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 1156
XspI CTAG 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.