Cyclic nucleotide-gated ion channel 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34500 |
| fragaria_vesca | FvH4_2g08720 FvH4_2g08720 FvH4_2g08720 |
| malus_domestica | MD05G1067100.v1.1 MD10G1076700.v1.1 |
| prunus_persica | Prupe.8G097500_v2.0.a1 |
| pyrus_communis | pycom05g05790 pycom10g06000 |
| rosa_chinensis | RchiOBHm_Chr6g0264191 |
| rosa_laevigata | RLG00000014281 |
| rosa_multiflora | Rmu_sc0005325.1_g000012 Rmu_sc0007214.1_g000014 |
| rosa_roxburghii | Rroxscaffold_176G00431530 Rroxscaffold_176G00431580 Rroxscaffold_4G00299000 Rroxscaffold_7G00203440 |
| rosa_rugosa | Rorug06G0009700 Rorug06G0009800 |
| rosa_samantha | Rh6AG130100 Rh6BG125900 Rh6BG126900 Rh6BG127300 Rh6CG125800 Rh6DG112600 |
| rosa_wichuraiana | Rw6G011320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 269 |
| AccII | CGCG | 1 cut(s) | 222 |
| AfaI | GTAC | 2 cut(s) | 27, 281 |
| AflII | CTTAAG | 1 cut(s) | 197 |
| AgsI | TTSAA | 1 cut(s) | 178 |
| AspLEI | GCGC | 1 cut(s) | 270 |
| BbsI | GAAGAC | 1 cut(s) | 11 |
| BclI | TGATCA | 1 cut(s) | 12 |
| BfmI | CTRYAG | 1 cut(s) | 302 |
| BfrI | CTTAAG | 1 cut(s) | 197 |
| BpiI | GAAGAC | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 2 cut(s) | 59, 307 |
| Bse1I | ACTGG | 1 cut(s) | 203 |
| BseGI | GGATG | 2 cut(s) | 169, 246 |
| BseNI | ACTGG | 1 cut(s) | 203 |
| Bsh1236I | CGCG | 1 cut(s) | 222 |
| Bsp1407I | TGTACA | 1 cut(s) | 25 |
| Bsp143I | GATC | 1 cut(s) | 12 |
| BspFNI | CGCG | 1 cut(s) | 222 |
| BspMAI | CTGCAG | 1 cut(s) | 306 |
| BspTI | CTTAAG | 1 cut(s) | 197 |
| BsrGI | TGTACA | 1 cut(s) | 25 |
| BsrI | ACTGG | 1 cut(s) | 203 |
| BssMI | GATC | 1 cut(s) | 12 |
| Bst4CI | ACNGT | 1 cut(s) | 279 |
| Bst6I | CTCTTC | 1 cut(s) | 316 |
| BstAFI | CTTAAG | 1 cut(s) | 197 |
| BstAUI | TGTACA | 1 cut(s) | 25 |
| BstF5I | GGATG | 2 cut(s) | 169, 246 |
| BstFNI | CGCG | 1 cut(s) | 222 |
| BstHHI | GCGC | 1 cut(s) | 270 |
| BstKTI | GATC | 1 cut(s) | 15 |
| BstMBI | GATC | 1 cut(s) | 12 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 16 |
| BstSFI | CTRYAG | 1 cut(s) | 302 |
| BstUI | CGCG | 1 cut(s) | 222 |
| BstV2I | GAAGAC | 1 cut(s) | 11 |
| BtsCI | GGATG | 2 cut(s) | 169, 246 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| CfoI | GCGC | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 16 |
| Csp6I | GTAC | 2 cut(s) | 26, 280 |
| CviAII | CATG | 3 cut(s) | 16, 59, 271 |
| CviJI | RGCY | 1 cut(s) | 202 |
| CviKI_1 | RGCY | 1 cut(s) | 202 |
| CviQI | GTAC | 2 cut(s) | 26, 280 |
| DpnI | GATC | 1 cut(s) | 14 |
| DpnII | GATC | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 316 |
| EarI | CTCTTC | 1 cut(s) | 316 |
| FaeI | CATG | 3 cut(s) | 19, 62, 274 |
| FaiI | YATR | 8 cut(s) | 17, 60, 131, 161, 272, 310, 314, 328 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 170, 202 |
| FatI | CATG | 3 cut(s) | 15, 58, 270 |
| FbaI | TGATCA | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 176, 253 |
| FspI | TGCGCA | 1 cut(s) | 269 |
| GlaI | GCGC | 1 cut(s) | 269 |
| HgaI | GACGC | 1 cut(s) | 16 |
| HhaI | GCGC | 1 cut(s) | 270 |
| Hin1II | CATG | 3 cut(s) | 19, 62, 274 |
| Hin6I | GCGC | 1 cut(s) | 268 |
| HinP1I | GCGC | 1 cut(s) | 268 |
| HinfI | GANTC | 1 cut(s) | 215 |
| Hpy166II | GTNNAC | 1 cut(s) | 28 |
| Hpy188I | TCNGA | 1 cut(s) | 295 |
| Hpy188III | TCNNGA | 1 cut(s) | 286 |
| Hpy8I | GTNNAC | 1 cut(s) | 28 |
| HpyAV | CCTTC | 3 cut(s) | 172, 222, 231 |
| HpyCH4III | ACNGT | 1 cut(s) | 279 |
| HpyCH4V | TGCA | 2 cut(s) | 19, 304 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 16 |
| Hsp92II | CATG | 3 cut(s) | 19, 62, 274 |
| HspAI | GCGC | 1 cut(s) | 268 |
| Ksp22I | TGATCA | 1 cut(s) | 12 |
| Kzo9I | GATC | 1 cut(s) | 12 |
| LmnI | GCTCC | 1 cut(s) | 91 |
| LpnPI | CCDG | 1 cut(s) | 216 |
| MalI | GATC | 1 cut(s) | 14 |
| MboI | GATC | 1 cut(s) | 12 |
| MboII | GAAGA | 4 cut(s) | 16, 74, 179, 246 |
| MnlI | CCTC | 1 cut(s) | 83 |
| MseI | TTAA | 1 cut(s) | 198 |
| MslI | CAYNNNNRTG | 1 cut(s) | 59 |
| MspCI | CTTAAG | 1 cut(s) | 197 |
| MvnI | CGCG | 1 cut(s) | 222 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 16 |
| NdeII | GATC | 1 cut(s) | 12 |
| NlaIII | CATG | 3 cut(s) | 19, 62, 274 |
| NsbI | TGCGCA | 1 cut(s) | 269 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PstI | CTGCAG | 1 cut(s) | 306 |
| RsaI | GTAC | 2 cut(s) | 27, 281 |
| RsaNI | GTAC | 2 cut(s) | 26, 280 |
| RseI | CAYNNNNRTG | 1 cut(s) | 59 |
| SaqAI | TTAA | 1 cut(s) | 198 |
| Sau3AI | GATC | 1 cut(s) | 12 |
| SfcI | CTRYAG | 1 cut(s) | 302 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 59 |
| SmlI | CTYRAG | 3 cut(s) | 38, 197, 286 |
| SmoI | CTYRAG | 3 cut(s) | 38, 197, 286 |
| TaaI | ACNGT | 1 cut(s) | 279 |
| TaqI | TCGA | 1 cut(s) | 154 |
| TatI | WGTACW | 1 cut(s) | 25 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| Tru1I | TTAA | 1 cut(s) | 198 |
| Tru9I | TTAA | 1 cut(s) | 198 |
| TscAI | CASTG | 1 cut(s) | 210 |
| TspDTI | ATGAA | 3 cut(s) | 17, 47, 180 |
| TspRI | CASTG | 1 cut(s) | 210 |
| Vha464I | CTTAAG | 1 cut(s) | 197 |