Rh6BG127300
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
19872717 .. 19873778
1062 bp
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UTR
Exon/CDS
Intron
Rh6BG127300.1

Sequence Viewer

Length: 375 bp
ATGGGAACATTCGGATATGTTTCTCCAGAGTATGCAAGTACAGGTATGCTTAATGAGGGGAGTGATGTATATAGTTTTGGAGTTCTACTTATGGAGATAATTACAGGAAGAAGCCCAATTGACTATTCCAGACCAGCTGGAGAGATGAACCTGGTTGATTGGTTTAAAGGAATGATTTCAAGTCGCCGTGGGGAGGAGATTTTAGATCCATTGATAGAAGTTCAGCCCCCTCCAAGATCTTTGAAGCGAGCATTGTTGGTTTGTCTCCGCTGTATAGATTTAGATGTCCATAAGCGGCCAAAAATGGGGCAAATTGTTCATATGCTTGAGGCAGAAGACTTTCCTTTTCGTTCGGAAACCCGATCAGCTCGATAG

Protein Analysis

124

Amino Acids

14.02

Weight (kDa)

5.68

Isoelectric Point (pI)

73.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 107 4.5e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 6 - 109 8.3e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 268, 295
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 296
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 193, 305
AgsI TTSAA 2 cut(s) 180, 244
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
AluBI AGCT 2 cut(s) 137, 368
AluI AGCT 2 cut(s) 137, 368
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 296
Asp700I GAANNNNTTC 2 cut(s) 175, 339
BbsI GAAGAC 1 cut(s) 342
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 269
BglII AGATCT 1 cut(s) 236
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 2 cut(s) 9, 159
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 305
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 193, 305
BseRI GAGGAG 1 cut(s) 209
BshFI GGCC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 193, 305
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 205, 236, 362
BspACI CCGC 2 cut(s) 268, 295
BspANI GGCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 3 cut(s) 205, 236, 362
Bst2UI CCWGG 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 187
BstKTI GATC 3 cut(s) 208, 239, 365
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 3 cut(s) 205, 236, 362
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 205, 236
BstYI RGATCY 2 cut(s) 205, 236
BsuRI GGCC 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 249
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 39
CviJI RGCY 5 cut(s) 114, 137, 226, 298, 368
CviKI_1 RGCY 5 cut(s) 114, 137, 226, 298, 368
CviQI GTAC 1 cut(s) 39
DpnI GATC 3 cut(s) 207, 238, 364
DpnII GATC 3 cut(s) 205, 236, 362
DraI TTTAAA 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 150
FauNDI CATATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 296
GsuI CTGGAG 2 cut(s) 9, 159
HaeIII GGCC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 14, 355
Hpy188III TCNNGA 2 cut(s) 26, 129
HpyCH4V TGCA 1 cut(s) 35
Kzo9I GATC 3 cut(s) 205, 236, 362
LpnPI CCDG 8 cut(s) 27, 39, 90, 123, 137, 142, 147, 164
MabI ACCWGGT 1 cut(s) 150
MalI GATC 3 cut(s) 207, 238, 364
MboI GATC 3 cut(s) 205, 236, 362
MboII GAAGA 2 cut(s) 120, 347
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 2 cut(s) 205, 236
MluCI AATT 3 cut(s) 99, 117, 312
MnlI CCTC 4 cut(s) 49, 187, 240, 322
MroXI GAANNNNTTC 2 cut(s) 175, 339
MseI TTAA 2 cut(s) 51, 165
MspA1I CMGCKG 2 cut(s) 137, 270
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 321
NdeII GATC 3 cut(s) 205, 236, 362
PdmI GAANNNNTTC 2 cut(s) 175, 339
PkrI GCNGC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PsuI RGATCY 2 cut(s) 205, 236
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 51, 165
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 3 cut(s) 205, 236, 362
ScrFI CCNGG 1 cut(s) 152
SetI ASST 4 cut(s) 46, 139, 153, 370
SexAI ACCWGGT 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 3 cut(s) 99, 117, 312
SsiI CCGC 2 cut(s) 268, 295
StyD4I CCNGG 1 cut(s) 150
TaqI TCGA 1 cut(s) 370
TasI AATT 3 cut(s) 99, 117, 312
TatI WGTACW 1 cut(s) 38
TauI GCSGC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 51, 165
Tru9I TTAA 2 cut(s) 51, 165
TspDTI ATGAA 2 cut(s) 161, 308
XmnI GAANNNNTTC 2 cut(s) 175, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.