Rmu_sc0007214.1_g000014
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007214.1
Physical Location & Seq
Reverse (-)
56101 .. 60115
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007214.1_g000014.1.cds

Sequence Viewer

Length: 1182 bp
atgtcggattccggcgacgagattccatctccgaacacctccctctcccacaagctcacctccaaaaccgagctcctcaacctcaagctctacgtcgtgatcgcaatcctcctcgccggcgtctttgccgtgtccctcctcgtcttcctctgcgtccgcgcccatcgggtttcgcgtcgccggaagagccgcatccgcgtgaagcacagctccggctcaatcccgctcgtctccaaagagatcgccgagatcaaggaacctcgtccggatccttctccttcacctcctccggccgccgccgcagccgagggcaaaatcggaaaccaaaagttgaaggaagcacgaccgactgaaccgacggttgatgtggaaaatgggaaaaggaggagcgcggagagtgacgtgttcgggtggggccggtggggtcaagctcagacagagtttaaggtggaagtggaagccataggaaaagtaaagcataagaacttggtcggtctaattggttattgtgcagaaggtgctcaaaggatgcttgtatatgaatatattgacaatgggaatttggagcagtggttgcatggtgatgttgggcctgtcagccctctgacttgggatatcagaatgaagatagccattggaactgcaaaagggctggcctatttacatgaagggttagaacccaaagtggtgcaccgtgatataaaatccagtaacattcttctggacagaaagtggaacccaagagtatcagatttcggtttggccaaactcttgggacctgagtcaagctatgtgactacacgtgtaatgggaacatttggatatgtttctccagagtatgcaagtacaggtatgcttaatgaggggagtgatgtatatagttttggagttctacttatggagataattacaggaagaagcccaattgactattccagaccagctggagagatgaaccttgttgattggtttaaaggaatgatttcaagtcgccgtggggaggagattttagatccattgatagaagttcagccccctccaagatctttgaagcgagcattgttggtttgtctccgctgtatagatttagatgtccataagcggccaaaaatggggcaaattgttcatatgcttgaggcagaagactttccttttcgttcggaaacccgatcagctcgatag

Protein Analysis

393

Amino Acids

43.65

Weight (kDa)

9.08

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 226
AccII CGCG 4 cut(s) 159, 175, 198, 392
AccIII TCCGGA 1 cut(s) 265
AclWI GGATC 3 cut(s) 263, 276, 1007
AcoI YGGCCR 3 cut(s) 291, 762, 1103
AcsI RAATTY 1 cut(s) 559
AcvI CACGTG 1 cut(s) 803
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 2 cut(s) 1000, 1112
AflIII ACRYGT 3 cut(s) 402, 800, 802
AgsI TTSAA 3 cut(s) 334, 987, 1051
AjiI CACGTC 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
AluBI AGCT 8 cut(s) 55, 73, 88, 210, 431, 789, 944, 1175
AluI AGCT 8 cut(s) 55, 73, 88, 210, 431, 789, 944, 1175
Alw21I GWGCWC 3 cut(s) 75, 523, 693
Alw26I GTCTC 2 cut(s) 235, 1076
Alw44I GTGCAC 1 cut(s) 689
AlwI GGATC 3 cut(s) 263, 276, 1007
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 6 cut(s) 291, 415, 590, 654, 762, 1103
ApaLI GTGCAC 1 cut(s) 689
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 559
Asp700I GAANNNNTTC 2 cut(s) 982, 1146
AspLEI GCGC 2 cut(s) 161, 392
AspS9I GGNCC 3 cut(s) 415, 590, 776
AsuHPI GGTGA 3 cut(s) 49, 273, 593
AvaII GGWCC 1 cut(s) 776
BaeGI GKGCMC 1 cut(s) 693
BalI TGGCCA 1 cut(s) 764
BamHI GGATCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 75
BbrPI CACGTG 1 cut(s) 803
BbsI GAAGAC 2 cut(s) 136, 1149
Bbv12I GWGCWC 3 cut(s) 75, 523, 693
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 34, 171
BceAI ACGGC 2 cut(s) 113, 978
BcoDI GTCTC 2 cut(s) 235, 1076
BglII AGATCT 1 cut(s) 1043
BisI GCNGC 6 cut(s) 190, 294, 297, 300, 303, 1103
BlsI GCNGC 6 cut(s) 191, 295, 298, 301, 304, 1104
Bme18I GGWCC 1 cut(s) 776
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 3 cut(s) 415, 590, 776
BmiI GGNNCC 5 cut(s) 258, 270, 416, 737, 777
BmsI GCATC 2 cut(s) 201, 519
BoxI GACNNNNGTC 1 cut(s) 781
BpiI GAAGAC 2 cut(s) 136, 1149
BpmI CTGGAG 2 cut(s) 816, 966
BpuEI CTTGAG 2 cut(s) 68, 1154
BsaAI YACGTR 1 cut(s) 803
BsaBI GATNNNNATC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 306, 994
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 1000, 1112
Bse118I RCCGGY 2 cut(s) 116, 417
Bse1I ACTGG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 306, 994
BseGI GGATG 2 cut(s) 192, 534
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 1000, 1112
BseMII CTCAG 2 cut(s) 446, 771
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 6 cut(s) 65, 101, 128, 276, 400, 1016
BseSI GKGCMC 1 cut(s) 693
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 4 cut(s) 159, 175, 198, 392
Bsh1285I CGRYCG 2 cut(s) 294, 347
BshFI GGCC 6 cut(s) 293, 417, 592, 656, 764, 1105
BsiEI CGRYCG 2 cut(s) 294, 347
BsiHKAI GWGCWC 3 cut(s) 75, 523, 693
BsiSI CCGG 7 cut(s) 12, 117, 181, 213, 266, 290, 418
BslFI GGGAC 2 cut(s) 118, 789
BslI CCNNNNNNNGG 2 cut(s) 1000, 1112
BsmAI GTCTC 2 cut(s) 235, 1076
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 118, 789
BsnI GGCC 6 cut(s) 293, 417, 592, 656, 764, 1105
Bsp1286I GDGCHC 3 cut(s) 75, 523, 693
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
BspANI GGCC 6 cut(s) 293, 417, 592, 656, 764, 1105
BspCNI CTCAG 2 cut(s) 445, 772
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 4 cut(s) 159, 175, 198, 392
BspLI GGNNCC 5 cut(s) 258, 270, 416, 737, 777
BspPI GGATC 3 cut(s) 263, 276, 1007
BspQI GCTCTTC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 226
BsrFI RCCGGY 2 cut(s) 116, 417
BsrI ACTGG 1 cut(s) 708
BssAI RCCGGY 2 cut(s) 116, 417
BssECI CCNNGG 2 cut(s) 306, 994
BssMI GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
BssNI GRCGYC 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 361, 695
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 518, 574
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 3 cut(s) 118, 654, 1056
BstDEI CTNAG 2 cut(s) 432, 780
BstDSI CCRYGG 1 cut(s) 994
BstF5I GGATG 2 cut(s) 192, 534
BstFNI CGCG 4 cut(s) 159, 175, 198, 392
BstHHI GCGC 2 cut(s) 161, 392
BstKTI GATC 7 cut(s) 102, 243, 252, 271, 1015, 1046, 1172
BstMAI GTCTC 2 cut(s) 235, 1076
BstMBI GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
BstMCI CGRYCG 2 cut(s) 294, 347
BstMWI GCNNNNNNNGC 6 cut(s) 186, 195, 299, 302, 518, 574
BstPAI GACNNNNGTC 1 cut(s) 781
BstSLI GKGCMC 1 cut(s) 693
BstUI CGCG 4 cut(s) 159, 175, 198, 392
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 2 cut(s) 136, 1149
BstX2I RGATCY 3 cut(s) 268, 1012, 1043
BstXI CCANNNNNNTGG 1 cut(s) 772
BstYI RGATCY 3 cut(s) 268, 1012, 1043
BstZI CGGCCG 1 cut(s) 291
BsuRI GGCC 6 cut(s) 293, 417, 592, 656, 764, 1105
BtgI CCRYGG 1 cut(s) 994
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 2 cut(s) 192, 534
BtsI GCAGTG 1 cut(s) 575
BtsIMutI CAGTG 1 cut(s) 575
Cac8I GCNNGC 3 cut(s) 118, 654, 1056
CfoI GCGC 2 cut(s) 161, 392
Cfr10I RCCGGY 2 cut(s) 116, 417
Cfr13I GGNCC 3 cut(s) 415, 590, 776
CseI GACGC 3 cut(s) 109, 142, 164
Csp6I GTAC 1 cut(s) 846
CviAII CATG 2 cut(s) 578, 665
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 2 cut(s) 432, 780
DpnI GATC 7 cut(s) 101, 242, 251, 270, 1014, 1045, 1171
DpnII GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
DraI TTTAAA 1 cut(s) 973
EaeI YGGCCR 3 cut(s) 291, 762, 1103
EagI CGGCCG 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 75
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 776
Eco52I CGGCCG 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 776
EcoRV GATATC 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 2 cut(s) 581, 668
FaqI GGGAC 2 cut(s) 118, 789
FatI CATG 2 cut(s) 577, 664
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 1128
Fnu4HI GCNGC 6 cut(s) 190, 294, 297, 300, 303, 1103
FokI GGATG 2 cut(s) 179, 541
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 6 cut(s) 190, 294, 297, 300, 303, 1103
GlaI GCGC 2 cut(s) 160, 391
GluI GCNGC 6 cut(s) 190, 294, 297, 300, 303, 1103
GsuI CTGGAG 2 cut(s) 816, 966
HaeIII GGCC 6 cut(s) 293, 417, 592, 656, 764, 1105
HapII CCGG 7 cut(s) 12, 117, 181, 213, 266, 290, 418
HgaI GACGC 3 cut(s) 109, 142, 164
HhaI GCGC 2 cut(s) 161, 392
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 581, 668
Hin6I GCGC 2 cut(s) 159, 390
HinP1I GCGC 2 cut(s) 159, 390
HinfI GANTC 3 cut(s) 8, 22, 782
HpaII CCGG 7 cut(s) 12, 117, 181, 213, 266, 290, 418
HphI GGTGA 3 cut(s) 49, 273, 593
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 8 cut(s) 7, 33, 320, 435, 606, 620, 751, 1162
Hpy188III TCNNGA 5 cut(s) 97, 266, 722, 833, 936
Hpy8I GTNNAC 1 cut(s) 691
Hpy99I CGWCG 4 cut(s) 20, 98, 180, 361
HpyAV CCTTC 5 cut(s) 282, 288, 328, 509, 662
HpyCH4III ACNGT 2 cut(s) 361, 695
HpyCH4IV ACGT 3 cut(s) 93, 402, 802
HpyCH4V TGCA 5 cut(s) 512, 577, 644, 691, 842
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 195, 299, 302, 518, 574
HpyF3I CTNAG 2 cut(s) 432, 780
HpySE526I ACGT 3 cut(s) 93, 402, 802
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 581, 668
HspAI GCGC 2 cut(s) 159, 390
Kpn2I TCCGGA 1 cut(s) 265
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 4 cut(s) 78, 215, 387, 565
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 2 cut(s) 201, 519
MaeII ACGT 3 cut(s) 93, 402, 802
MaeIII GTNAC 3 cut(s) 398, 710, 793
MalI GATC 7 cut(s) 101, 242, 251, 270, 1014, 1045, 1171
MbiI CCGCTC 1 cut(s) 226
MboI GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
MboII GAAGA 6 cut(s) 136, 196, 637, 710, 927, 1154
MfeI CAATTG 1 cut(s) 924
MflI RGATCY 3 cut(s) 268, 1012, 1043
MhlI GDGCHC 3 cut(s) 75, 523, 693
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 5 cut(s) 498, 559, 906, 924, 1119
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 1 cut(s) 791
Mox20I TGGCCA 1 cut(s) 764
MreI CGCCGGCG 1 cut(s) 116
MroI TCCGGA 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 2 cut(s) 982, 1146
MscI TGGCCA 1 cut(s) 764
MseI TTAA 3 cut(s) 444, 858, 972
MslI CAYNNNNRTG 2 cut(s) 197, 582
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 2 cut(s) 944, 1077
MspI CCGG 7 cut(s) 12, 117, 181, 213, 266, 290, 418
MunI CAATTG 1 cut(s) 924
MvnI CGCG 4 cut(s) 159, 175, 198, 392
MwoI GCNNNNNNNGC 6 cut(s) 186, 195, 299, 302, 518, 574
NaeI GCCGGC 1 cut(s) 118
NdeI CATATG 1 cut(s) 1128
NdeII GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 581, 668
NlaIV GGNNCC 5 cut(s) 258, 270, 416, 737, 777
NmeAIII GCCGAG 2 cut(s) 271, 331
NmuCI GTSAC 2 cut(s) 398, 793
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 2 cut(s) 982, 1146
PfeI GAWTC 2 cut(s) 8, 22
PkrI GCNGC 6 cut(s) 191, 295, 298, 301, 304, 1104
PleI GAGTC 1 cut(s) 790
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 1 cut(s) 790
Ppu21I YACGTR 1 cut(s) 803
PpuMI RGGWCCY 1 cut(s) 776
PshAI GACNNNNGTC 1 cut(s) 781
Psp124BI GAGCTC 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 776
PspCI CACGTG 1 cut(s) 803
PspN4I GGNNCC 5 cut(s) 258, 270, 416, 737, 777
PspPI GGNCC 3 cut(s) 415, 590, 776
PspPPI RGGWCCY 1 cut(s) 776
PsuI RGATCY 3 cut(s) 268, 1012, 1043
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
RseI CAYNNNNRTG 2 cut(s) 197, 582
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 444, 858, 972
SatI GCNGC 6 cut(s) 190, 294, 297, 300, 303, 1103
Sau3AI GATC 7 cut(s) 99, 240, 249, 268, 1012, 1043, 1169
Sau96I GGNCC 3 cut(s) 415, 590, 776
SchI GAGTC 1 cut(s) 791
SduI GDGCHC 3 cut(s) 75, 523, 693
SfaNI GCATC 2 cut(s) 201, 519
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 2 cut(s) 197, 582
SmlI CTYRAG 2 cut(s) 83, 1133
SmoI CTYRAG 2 cut(s) 83, 1133
Sse9I AATT 5 cut(s) 498, 559, 906, 924, 1119
SstI GAGCTC 1 cut(s) 75
TaaI ACNGT 2 cut(s) 361, 695
TaiI ACGT 3 cut(s) 96, 405, 805
TaqI TCGA 1 cut(s) 1177
TaqII GACCGA 2 cut(s) 361, 482
TasI AATT 5 cut(s) 498, 559, 906, 924, 1119
TatI WGTACW 1 cut(s) 845
TauI GCSGC 5 cut(s) 192, 296, 299, 302, 1105
TfiI GAWTC 2 cut(s) 8, 22
Tru1I TTAA 3 cut(s) 444, 858, 972
Tru9I TTAA 3 cut(s) 444, 858, 972
TscAI CASTG 1 cut(s) 575
TseFI GTSAC 2 cut(s) 398, 793
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 2 cut(s) 398, 793
TspDTI ATGAA 5 cut(s) 555, 638, 681, 968, 1115
TspRI CASTG 1 cut(s) 575
VneI GTGCAC 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 1 cut(s) 559
XmnI GAANNNNTTC 2 cut(s) 982, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.