Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006729

Physical Location & Seq

Genomic Coordinates Reverse (-)

19636879 .. 19641237

Gene Structure 4359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG130100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTTTTGTTAACAAAAAATCTACTTGCTTGTAATCTTATATATAGGGGTCAAGCTCAGACAGAGTTTAAGGTGGAAGTGGAAGCCATAGGAAAAGTAAAGCATAAGAACTTGGTTGGTCTAATTGGTTATTGTGCAGAAGGTGCTCAAAGGATGCTTGTATATGAATATATTGACAATGGGAATTTGGAGCAGTGGTTGCATGGTGATGTTGGGCCTGTCAGCCCTCTGACTTGGGATATCAGAATGAAGATAGCCATTGGAACCGCAAAAGGGCTGGCCTATTTACATGAAGGGTTAGAACCCAAAGTGGTGCACCGTGATATAAAATCCAGTAACATTCTTCTGGACAGAAAGTGGAATGCAAGAGTATCAGATTTTGGCTTGGCCAAACTCTTGGGACCTGAGTCAAGCTATGTGACTACACGTGTAATGGGAACATTCGGATATGTTTCTCCAGAGTATGCAAGCACAGGTATGCTTAATGAGGGGAGTGATGTATATAGTTTTGGAGTTCTACTTATGGAGATAATTACAGGAAGAAGCCCAATTGACTATTCCAGACCAGCAGGAGAGATGAACCTGGTTGATTGGTTTAAAGGAATGATTTCAAGTCGCCGTGGGGAGGAGATTTTAGATCCATTGATAGAAGTTCAGCCCCCTCCAAGATCTTTGAAGCGAGCATTGTTGGTTTGTCTCCGCTGTATAGATTTAGATGTCCATAAGCGGCCAAAAATGGGGCAAATTGTTCATATGCTTGAGGCAGAAGACTTTCCTTTTCGTTCGGAAACCCGATCAGCTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

30.14

Weight (kDa)

7.68

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	17 - 253	4.1e-39	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	21 - 251	4.2e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34500
fragaria_vesca	FvH4_2g08720 FvH4_2g08720 FvH4_2g08720
malus_domestica	MD05G1067100.v1.1 MD10G1076700.v1.1
prunus_persica	Prupe.8G097500_v2.0.a1
pyrus_communis	pycom05g05790 pycom10g06000
rosa_chinensis	RchiOBHm_Chr6g0264191
rosa_laevigata	RLG00000014281
rosa_multiflora	Rmu_sc0005325.1_g000012 Rmu_sc0007214.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431530 Rroxscaffold_176G00431580 Rroxscaffold_4G00299000 Rroxscaffold_7G00203440
rosa_rugosa	Rorug06G0009700 Rorug06G0009800
rosa_samantha	Rh6AG130100 Rh6BG125900 Rh6BG126900 Rh6BG127300 Rh6CG125800 Rh6DG112600
rosa_wichuraiana	Rw6G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	267, 700, 727
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	2 cut(s)	387, 728
AcsI	RAATTY	1 cut(s)	184
AcvI	CACGTG	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	273, 625, 737
AflIII	ACRYGT	2 cut(s)	425, 427
AgsI	TTSAA	2 cut(s)	612, 676
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
AluBI	AGCT	3 cut(s)	56, 414, 800
AluI	AGCT	3 cut(s)	56, 414, 800
Alw21I	GWGCWC	2 cut(s)	148, 318
Alw26I	GTCTC	1 cut(s)	701
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	632
AoxI	GGCC	4 cut(s)	215, 279, 387, 728
ApaLI	GTGCAC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	184
Asp700I	GAANNNNTTC	2 cut(s)	607, 771
AspS9I	GGNCC	2 cut(s)	215, 401
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	389
BbrPI	CACGTG	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	774
Bbv12I	GWGCWC	2 cut(s)	148, 318
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	701
BglII	AGATCT	1 cut(s)	668
BisI	GCNGC	1 cut(s)	728
BlsI	GCNGC	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	215, 401
BmiI	GGNNCC	2 cut(s)	265, 402
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	774
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	779
BsaAI	YACGTR	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	619
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 625, 737
Bse1I	ACTGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	3 cut(s)	273, 625, 737
BseMII	CTCAG	2 cut(s)	71, 396
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	217, 281, 389, 730
BsiHKAI	GWGCWC	2 cut(s)	148, 318
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	3 cut(s)	273, 625, 737
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	217, 281, 389, 730
Bsp1286I	GDGCHC	2 cut(s)	148, 318
Bsp143I	GATC	3 cut(s)	637, 668, 794
BspACI	CCGC	3 cut(s)	267, 700, 727
BspANI	GGCC	4 cut(s)	217, 281, 389, 730
BspCNI	CTCAG	2 cut(s)	70, 397
BspLI	GGNNCC	2 cut(s)	265, 402
BspPI	GGATC	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	3 cut(s)	637, 668, 794
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	320
BstAPI	GCANNNNNTGC	2 cut(s)	143, 199
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	279, 469, 681
BstDEI	CTNAG	2 cut(s)	57, 405
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	640, 671, 797
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	3 cut(s)	637, 668, 794
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 199
BstNI	CCWGG	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	2 cut(s)	637, 668
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	2 cut(s)	637, 668
BsuRI	GGCC	4 cut(s)	217, 281, 389, 730
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	279, 469, 681
Cfr13I	GGNCC	2 cut(s)	215, 401
CsiI	ACCWGGT	1 cut(s)	582
CviAII	CATG	2 cut(s)	203, 290
DdeI	CTNAG	2 cut(s)	57, 405
DpnI	GATC	3 cut(s)	639, 670, 796
DpnII	GATC	3 cut(s)	637, 668, 794
DraI	TTTAAA	1 cut(s)	598
EaeI	YGGCCR	2 cut(s)	387, 728
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	401
Eco72I	CACGTG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	582
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	2 cut(s)	206, 293
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	2 cut(s)	202, 289
FauNDI	CATATG	1 cut(s)	753
Fnu4HI	GCNGC	1 cut(s)	728
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	728
GluI	GCNGC	1 cut(s)	728
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	217, 281, 389, 730
Hin1II	CATG	2 cut(s)	206, 293
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	407
HpaI	GTTAAC	1 cut(s)	12
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	12, 316
Hpy188I	TCNGA	6 cut(s)	60, 231, 245, 376, 446, 787
Hpy188III	TCNNGA	3 cut(s)	347, 458, 561
Hpy8I	GTNNAC	2 cut(s)	12, 316
HpyAV	CCTTC	2 cut(s)	134, 287
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	137, 202, 316, 365, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 199
HpyF3I	CTNAG	2 cut(s)	57, 405
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	2 cut(s)	206, 293
KspAI	GTTAAC	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	637, 668, 794
LmnI	GCTCC	1 cut(s)	190
LweI	GCATC	1 cut(s)	144
MabI	ACCWGGT	1 cut(s)	582
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	335, 418
MalI	GATC	3 cut(s)	639, 670, 796
MboI	GATC	3 cut(s)	637, 668, 794
MboII	GAAGA	4 cut(s)	262, 335, 552, 779
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	637, 668
MhlI	GDGCHC	2 cut(s)	148, 318
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	5 cut(s)	123, 184, 531, 549, 744
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	5 cut(s)	237, 481, 619, 672, 754
Mox20I	TGGCCA	1 cut(s)	389
MroXI	GAANNNNTTC	2 cut(s)	607, 771
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	4 cut(s)	11, 69, 483, 597
MslI	CAYNNNNRTG	2 cut(s)	207, 476
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	702
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	143, 199
NdeI	CATATG	1 cut(s)	753
NdeII	GATC	3 cut(s)	637, 668, 794
NlaIII	CATG	2 cut(s)	206, 293
NlaIV	GGNNCC	2 cut(s)	265, 402
NmuCI	GTSAC	1 cut(s)	418
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	2 cut(s)	607, 771
PkrI	GCNGC	1 cut(s)	729
PleI	GAGTC	1 cut(s)	415
PmaCI	CACGTG	1 cut(s)	428
PmlI	CACGTG	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	401
PshAI	GACNNNNGTC	1 cut(s)	406
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	582
PspCI	CACGTG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	265, 402
PspPI	GGNCC	2 cut(s)	215, 401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	637, 668
RseI	CAYNNNNRTG	2 cut(s)	207, 476
SaqAI	TTAA	4 cut(s)	11, 69, 483, 597
SatI	GCNGC	1 cut(s)	728
Sau3AI	GATC	3 cut(s)	637, 668, 794
Sau96I	GGNCC	2 cut(s)	215, 401
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	2 cut(s)	148, 318
SetI	ASST	9 cut(s)	58, 75, 145, 406, 416, 430, 478, 585, 802
SexAI	ACCWGGT	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	207, 476
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	5 cut(s)	123, 184, 531, 549, 744
SsiI	CCGC	3 cut(s)	267, 700, 727
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	1 cut(s)	802
TasI	AATT	5 cut(s)	123, 184, 531, 549, 744
TauI	GCSGC	1 cut(s)	730
Tru1I	TTAA	4 cut(s)	11, 69, 483, 597
Tru9I	TTAA	4 cut(s)	11, 69, 483, 597
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	5 cut(s)	180, 263, 306, 593, 740
TspRI	CASTG	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	184
XmnI	GAANNNNTTC	2 cut(s)	607, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.