RchiOBHm_Chr6g0264191
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
19299294 .. 19303889
4596 bp
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UTR
Exon/CDS
Intron
PRQ23693

Sequence Viewer

Length: 1329 bp
ATGTCGGATTCCGGCGATGAGATTCCATCTCCGAACACCTCCCTCTCCCACAAGCTCACCTCCAAAACCGAGCTCCTCAACCTCAAGCTCTACGTCGTGATCGCAATCCTCCTCGCCGGCGTGCTTGCCGTGTCCCTCCTTGTCTTCCTCTGCGTCCGCGCCCATCGGGTTTCGCGTCGCCGGAAGAGCCGCATCCGCGTGAAGCACAGCTCCGGCTCAATCCCGCTCGTCTCCAAAGAGATCGCCGAGATCAAGGAACCTCGTCCGGATCCTTCTCCTTCACCTCCTCCTGCCGCCGCCGCCGCCGCAGAGGGCAAAATCGGAAACCAAAAGTTGAAGGAAGCGCGACCGACTGAACCGACGGTTGATGTGGAAAATGGGAAAAGGAGGAGCGGGGAGAGTGACGTGTTCGGGTGGGGCCGGTGGTATAGCCTCAGGGAGCTGGAGACCGCGACACGTGGATTCTCGCCAGAGAATGTGATTGGAGAAGGAGGGTACGGCGTCGTTTACCGGGGATCTTTGCAAGACGGCTCTGTTGTCGCCGTCAAGAACCTTCTTAATAACAACAGGGGTCAAGCTCAAACAGAGTTTAAGGTGGAAGTGGAAGCCATAGGAAAAGTAAAGCACAAGAACTTGGTTGGTCTAATTGGCTATTGTGCAGAGGGTGCTCAAAGGATGCTTGTATATGAATATATTGACAATGGGAATTTGGAGCAGTGGTTGCATGGTGATGTTGGGCCTGTCAGCCCTCTGACTTGGGATATCAGAATGAAGATAGCCATTGGAACCGCAAAAGGGCTGGCCTATTTACATGAAGGGTTAGAACCCAAAGTGGTGCACCGTGATATAAAATCCAGTAACATTCTTCTGGACAGAAAGTGGAACCCAAGAGTATCAGATTTCGGTTTGGCCAAACTCTTGGGACCTGAGTCAAGCTATGTGACTACACGTGTAATGGGAACATTCGGATATGTTTCTCCAGAGTATGCAAGTACAGGTATGCTTAATGAGGGGAGTGATGTATATAGTTTTGGAGTTCTACTTATGGAGATAATTACAGGAAGAAGCCCAATTGACTATTCCAGACCAGCTGGAGAGATGAACCTTGTTGATTGGTTTAAAGGAATGATTTCAAGTCGCCGTGGGGAGGAGATTTTAGATCCATTGATAGAAGTTCAGCCCCCTCCAAGATCTTTGAAGCGAGCATTGTTGGTTTGTCTCCGCTGTATAGATTTAGATGTCCATAAGCGGCCAAAAATGGGGCAAATTGTTCATATGCTTGAGGCAGAAGACTTTCCTTTTCGTTCAGAAACCCGATCAGCTCGATAG

Protein Analysis

442

Amino Acids

48.85

Weight (kDa)

9.04

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 158 - 427 1.2e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 158 - 425 1.5e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 226, 393
AccII CGCG 5 cut(s) 159, 175, 198, 346, 452
AccIII TCCGGA 1 cut(s) 265
AclWI GGATC 4 cut(s) 263, 276, 523, 1154
AcoI YGGCCR 2 cut(s) 909, 1250
AcsI RAATTY 1 cut(s) 706
AcvI CACGTG 2 cut(s) 458, 950
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 497, 994
AfiI CCNNNNNNNGG 3 cut(s) 795, 1147, 1259
AflIII ACRYGT 4 cut(s) 405, 455, 947, 949
AgsI TTSAA 3 cut(s) 337, 1134, 1198
AjiI CACGTC 1 cut(s) 406
AjuI GAANNNNNNNTTGG 2 cut(s) 1063, 1095
AluBI AGCT 9 cut(s) 55, 73, 88, 210, 442, 578, 936, 1091, 1322
AluI AGCT 9 cut(s) 55, 73, 88, 210, 442, 578, 936, 1091, 1322
Alw21I GWGCWC 3 cut(s) 75, 670, 840
Alw26I GTCTC 3 cut(s) 235, 440, 1223
Alw44I GTGCAC 1 cut(s) 836
AlwI GGATC 4 cut(s) 263, 276, 523, 1154
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 5 cut(s) 418, 737, 801, 909, 1250
ApaLI GTGCAC 1 cut(s) 836
ApoI RAATTY 1 cut(s) 706
Asp700I GAANNNNTTC 2 cut(s) 1129, 1293
AspLEI GCGC 2 cut(s) 161, 346
AspS9I GGNCC 3 cut(s) 418, 737, 923
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 3 cut(s) 49, 273, 740
AvaII GGWCC 1 cut(s) 923
AxyI CCTNAGG 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 840
BalI TGGCCA 1 cut(s) 911
BamHI GGATCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 75
BbrPI CACGTG 2 cut(s) 458, 950
BbsI GAAGAC 2 cut(s) 136, 1296
Bbv12I GWGCWC 3 cut(s) 75, 670, 840
BccI CCATC 2 cut(s) 34, 171
BceAI ACGGC 5 cut(s) 113, 514, 527, 544, 1125
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 3 cut(s) 235, 440, 1223
BglII AGATCT 1 cut(s) 1190
BisI GCNGC 7 cut(s) 190, 294, 297, 300, 303, 306, 1250
BlsI GCNGC 7 cut(s) 191, 295, 298, 301, 304, 307, 1251
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 1 cut(s) 923
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 3 cut(s) 418, 737, 923
BmiI GGNNCC 6 cut(s) 258, 270, 419, 787, 884, 924
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 201, 666
BoxI GACNNNNGTC 1 cut(s) 928
BpiI GAAGAC 2 cut(s) 136, 1296
BpmI CTGGAG 3 cut(s) 464, 963, 1113
BpuEI CTTGAG 2 cut(s) 68, 1301
BpuMI CCSGG 1 cut(s) 512
BsaAI YACGTR 2 cut(s) 458, 950
BsaBI GATNNNNATC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 511, 1141
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bsc4I CCNNNNNNNGG 3 cut(s) 795, 1147, 1259
Bse118I RCCGGY 2 cut(s) 116, 420
Bse1I ACTGG 1 cut(s) 855
Bse21I CCTNAGG 1 cut(s) 434
Bse8I GATNNNNATC 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 511, 1141
BseGI GGATG 2 cut(s) 192, 681
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 3 cut(s) 795, 1147, 1259
BseMII CTCAG 2 cut(s) 448, 918
BseNI ACTGG 1 cut(s) 855
BseRI GAGGAG 5 cut(s) 65, 101, 276, 403, 1163
BseSI GKGCMC 1 cut(s) 840
BsgI GTGCAG 1 cut(s) 678
Bsh1236I CGCG 5 cut(s) 159, 175, 198, 346, 452
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 5 cut(s) 420, 739, 803, 911, 1252
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 3 cut(s) 75, 670, 840
BsiSI CCGG 7 cut(s) 12, 117, 181, 213, 266, 421, 511
BslFI GGGAC 2 cut(s) 118, 936
BslI CCNNNNNNNGG 3 cut(s) 795, 1147, 1259
BsmAI GTCTC 3 cut(s) 235, 440, 1223
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 118, 936
BsnI GGCC 5 cut(s) 420, 739, 803, 911, 1252
Bso31I GGTCTC 1 cut(s) 440
Bsp1286I GDGCHC 3 cut(s) 75, 670, 840
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
BspANI GGCC 5 cut(s) 420, 739, 803, 911, 1252
BspCNI CTCAG 2 cut(s) 447, 919
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 5 cut(s) 159, 175, 198, 346, 452
BspLI GGNNCC 6 cut(s) 258, 270, 419, 787, 884, 924
BspPI GGATC 4 cut(s) 263, 276, 523, 1154
BspQI GCTCTTC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 2 cut(s) 226, 393
BsrFI RCCGGY 2 cut(s) 116, 420
BsrI ACTGG 1 cut(s) 855
BssAI RCCGGY 2 cut(s) 116, 420
BssECI CCNNGG 2 cut(s) 511, 1141
BssMI GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
BssNI GRCGYC 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 364, 842
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 501
BstAPI GCANNNNNTGC 2 cut(s) 665, 721
BstBAI YACGTR 2 cut(s) 458, 950
BstC8I GCNNGC 5 cut(s) 118, 122, 126, 801, 1203
BstDEI CTNAG 2 cut(s) 434, 927
BstDSI CCRYGG 1 cut(s) 1141
BstF5I GGATG 2 cut(s) 192, 681
BstFNI CGCG 5 cut(s) 159, 175, 198, 346, 452
BstHHI GCGC 2 cut(s) 161, 346
BstKTI GATC 8 cut(s) 102, 243, 252, 271, 518, 1162, 1193, 1319
BstMAI GTCTC 3 cut(s) 235, 440, 1223
BstMBI GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 7 cut(s) 186, 195, 299, 302, 305, 665, 721
BstPAI GACNNNNGTC 1 cut(s) 928
BstSCI CCNGG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 840
BstUI CGCG 5 cut(s) 159, 175, 198, 346, 452
BstV2I GAAGAC 2 cut(s) 136, 1296
BstX2I RGATCY 4 cut(s) 268, 515, 1159, 1190
BstXI CCANNNNNNTGG 1 cut(s) 919
BstYI RGATCY 4 cut(s) 268, 515, 1159, 1190
Bsu36I CCTNAGG 1 cut(s) 434
BsuRI GGCC 5 cut(s) 420, 739, 803, 911, 1252
BtgI CCRYGG 1 cut(s) 1141
BtgZI GCGATG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 2 cut(s) 192, 681
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 1 cut(s) 722
Cac8I GCNNGC 5 cut(s) 118, 122, 126, 801, 1203
CfoI GCGC 2 cut(s) 161, 346
Cfr10I RCCGGY 2 cut(s) 116, 420
Cfr13I GGNCC 3 cut(s) 418, 737, 923
CseI GACGC 3 cut(s) 142, 164, 490
Csp6I GTAC 2 cut(s) 496, 993
CviAII CATG 2 cut(s) 725, 812
CviQI GTAC 2 cut(s) 496, 993
DdeI CTNAG 2 cut(s) 434, 927
DpnI GATC 8 cut(s) 101, 242, 251, 270, 517, 1161, 1192, 1318
DpnII GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
DraI TTTAAA 1 cut(s) 1120
EaeI YGGCCR 2 cut(s) 909, 1250
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 763
Eco47I GGWCC 1 cut(s) 923
Eco53kI GAGCTC 1 cut(s) 73
Eco72I CACGTG 2 cut(s) 458, 950
Eco81I CCTNAGG 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 923
EcoRV GATATC 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 2 cut(s) 728, 815
FaqI GGGAC 2 cut(s) 118, 936
FatI CATG 2 cut(s) 724, 811
FauI CCCGC 2 cut(s) 231, 386
FauNDI CATATG 1 cut(s) 1275
Fnu4HI GCNGC 7 cut(s) 190, 294, 297, 300, 303, 306, 1250
FokI GGATG 2 cut(s) 179, 688
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 7 cut(s) 190, 294, 297, 300, 303, 306, 1250
GlaI GCGC 2 cut(s) 160, 345
GluI GCNGC 7 cut(s) 190, 294, 297, 300, 303, 306, 1250
GsuI CTGGAG 3 cut(s) 464, 963, 1113
HaeIII GGCC 5 cut(s) 420, 739, 803, 911, 1252
HapII CCGG 7 cut(s) 12, 117, 181, 213, 266, 421, 511
HgaI GACGC 3 cut(s) 142, 164, 490
HhaI GCGC 2 cut(s) 161, 346
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 2 cut(s) 728, 815
Hin6I GCGC 2 cut(s) 159, 344
HinP1I GCGC 2 cut(s) 159, 344
HinfI GANTC 4 cut(s) 8, 22, 462, 929
HpaII CCGG 7 cut(s) 12, 117, 181, 213, 266, 421, 511
HphI GGTGA 3 cut(s) 49, 273, 740
Hpy166II GTNNAC 2 cut(s) 508, 838
Hpy188I TCNGA 8 cut(s) 7, 33, 323, 753, 767, 898, 968, 1309
Hpy188III TCNNGA 6 cut(s) 97, 266, 547, 869, 980, 1083
Hpy8I GTNNAC 2 cut(s) 508, 838
Hpy99I CGWCG 4 cut(s) 98, 180, 364, 506
HpyAV CCTTC 6 cut(s) 282, 288, 331, 482, 563, 809
HpyCH4III ACNGT 2 cut(s) 364, 842
HpyCH4IV ACGT 4 cut(s) 93, 405, 457, 949
HpyCH4V TGCA 5 cut(s) 523, 659, 724, 838, 989
HpyF10VI GCNNNNNNNGC 7 cut(s) 186, 195, 299, 302, 305, 665, 721
HpyF3I CTNAG 2 cut(s) 434, 927
HpySE526I ACGT 4 cut(s) 93, 405, 457, 949
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 2 cut(s) 728, 815
HspAI GCGC 2 cut(s) 159, 344
Kpn2I TCCGGA 1 cut(s) 265
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 5 cut(s) 78, 215, 390, 439, 712
LweI GCATC 2 cut(s) 201, 666
MaeII ACGT 4 cut(s) 93, 405, 457, 949
MaeIII GTNAC 3 cut(s) 401, 857, 940
MalI GATC 8 cut(s) 101, 242, 251, 270, 517, 1161, 1192, 1318
MbiI CCGCTC 2 cut(s) 226, 393
MboI GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
MboII GAAGA 6 cut(s) 136, 196, 784, 857, 1074, 1301
MfeI CAATTG 1 cut(s) 1071
MflI RGATCY 4 cut(s) 268, 515, 1159, 1190
MhlI GDGCHC 3 cut(s) 75, 670, 840
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 5 cut(s) 645, 706, 1053, 1071, 1266
MluNI TGGCCA 1 cut(s) 911
MlyI GAGTC 1 cut(s) 938
Mox20I TGGCCA 1 cut(s) 911
MreI CGCCGGCG 1 cut(s) 116
MroI TCCGGA 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 2 cut(s) 1129, 1293
MscI TGGCCA 1 cut(s) 911
MseI TTAA 4 cut(s) 558, 591, 1005, 1119
MslI CAYNNNNRTG 2 cut(s) 197, 729
Msp20I TGGCCA 1 cut(s) 911
MspA1I CMGCKG 2 cut(s) 1091, 1224
MspI CCGG 7 cut(s) 12, 117, 181, 213, 266, 421, 511
MspR9I CCNGG 1 cut(s) 512
MunI CAATTG 1 cut(s) 1071
MvnI CGCG 5 cut(s) 159, 175, 198, 346, 452
MwoI GCNNNNNNNGC 7 cut(s) 186, 195, 299, 302, 305, 665, 721
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 512
NdeI CATATG 1 cut(s) 1275
NdeII GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 728, 815
NlaIV GGNNCC 6 cut(s) 258, 270, 419, 787, 884, 924
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 401, 940
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 2 cut(s) 1129, 1293
PfeI GAWTC 3 cut(s) 8, 22, 462
PkrI GCNGC 7 cut(s) 191, 295, 298, 301, 304, 307, 1251
PleI GAGTC 1 cut(s) 937
PmaCI CACGTG 2 cut(s) 458, 950
PmlI CACGTG 2 cut(s) 458, 950
PpsI GAGTC 1 cut(s) 937
Ppu21I YACGTR 2 cut(s) 458, 950
PpuMI RGGWCCY 1 cut(s) 923
PshAI GACNNNNGTC 1 cut(s) 928
Psp124BI GAGCTC 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 923
PspCI CACGTG 2 cut(s) 458, 950
PspN4I GGNNCC 6 cut(s) 258, 270, 419, 787, 884, 924
PspPI GGNCC 3 cut(s) 418, 737, 923
PspPPI RGGWCCY 1 cut(s) 923
PsuI RGATCY 4 cut(s) 268, 515, 1159, 1190
PvuII CAGCTG 1 cut(s) 1091
RsaI GTAC 2 cut(s) 497, 994
RsaNI GTAC 2 cut(s) 496, 993
RseI CAYNNNNRTG 2 cut(s) 197, 729
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 4 cut(s) 558, 591, 1005, 1119
SatI GCNGC 7 cut(s) 190, 294, 297, 300, 303, 306, 1250
Sau3AI GATC 8 cut(s) 99, 240, 249, 268, 515, 1159, 1190, 1316
Sau96I GGNCC 3 cut(s) 418, 737, 923
SchI GAGTC 1 cut(s) 938
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 3 cut(s) 75, 670, 840
SfaNI GCATC 2 cut(s) 201, 666
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 923
SmiMI CAYNNNNRTG 2 cut(s) 197, 729
SmlI CTYRAG 2 cut(s) 83, 1280
SmoI CTYRAG 2 cut(s) 83, 1280
Sse9I AATT 5 cut(s) 645, 706, 1053, 1071, 1266
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 510
TaaI ACNGT 2 cut(s) 364, 842
TaiI ACGT 4 cut(s) 96, 408, 460, 952
TaqI TCGA 1 cut(s) 1324
TaqII GACCGA 1 cut(s) 364
TasI AATT 5 cut(s) 645, 706, 1053, 1071, 1266
TatI WGTACW 1 cut(s) 992
TauI GCSGC 7 cut(s) 192, 296, 299, 302, 305, 308, 1252
TfiI GAWTC 3 cut(s) 8, 22, 462
Tru1I TTAA 4 cut(s) 558, 591, 1005, 1119
Tru9I TTAA 4 cut(s) 558, 591, 1005, 1119
TscAI CASTG 1 cut(s) 722
TseFI GTSAC 2 cut(s) 401, 940
Tsp45I GTSAC 2 cut(s) 401, 940
TspDTI ATGAA 5 cut(s) 702, 785, 828, 1115, 1262
TspRI CASTG 1 cut(s) 722
VneI GTGCAC 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 923
XapI RAATTY 1 cut(s) 706
XmnI GAANNNNTTC 2 cut(s) 1129, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.