Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006729

Physical Location & Seq

Genomic Coordinates Reverse (-)

1464898 .. 1465782

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTTGATCTTCTGGGTCGCTCTGGGCTGCTGCATGATGCTTACAAGCTGATTAAACGAATGCCAATGGAGCCAAACTCTGGCGTATGGGGGGCTCTTTTTGGTGCTTGTAGGGTGTATGGTAACATTGAGCTTGGGAAGGAAGTTGCAGAAATGTTATTTGCTTTAGAGCCGTCCGATTCCAGAAACTATATCATGCTATCAAATATGTACTCCGCAGCTGGTTTGTGGAGGAATGCTTCAAAGTCTCACCCTGAGTCAGAGAGGATATATGCCAAGTTGGAAGAAGTGATTGAAAAGATCCGGAAGGCTGGATTTGTGTCTCAAACTGAATTTATTCTACATGATGTTGAAGAGGCAGTGAAAGTAGATCTGATCAGTAAGCACAGTGAGAAATTAGCCATTGCATTTGGGCTTTTGGTGATTAATGCTGGCATGCCAATAATTATTACCAAGAACCTTCGAATTTGTGGTGACTGTCACGGCGCTGCAAAGTTCATTTCATTGATTGAGAAGCGAACTATTATAATTCGAGATTCTAAGCGGTTCCATCATTTTACTAATGTTATTAGTTTCCCATGGCACGTCGAAGCCAATATTCGACTGGCAGCTGACCAGGGAAATGACAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

8.39

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 81	8.6e-08	E motif
DYW_deaminase	PF14432	105 - 188	1.5e-31	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34500
fragaria_vesca	FvH4_2g08720 FvH4_2g08720 FvH4_2g08720
malus_domestica	MD05G1067100.v1.1 MD10G1076700.v1.1
prunus_persica	Prupe.8G097500_v2.0.a1
pyrus_communis	pycom05g05790 pycom10g06000
rosa_chinensis	RchiOBHm_Chr6g0264191
rosa_laevigata	RLG00000014281
rosa_multiflora	Rmu_sc0005325.1_g000012 Rmu_sc0007214.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431530 Rroxscaffold_176G00431580 Rroxscaffold_4G00299000 Rroxscaffold_7G00203440
rosa_rugosa	Rorug06G0009700 Rorug06G0009800
rosa_samantha	Rh6AG130100 Rh6BG125900 Rh6BG126900 Rh6BG127300 Rh6CG125800 Rh6DG112600
rosa_wichuraiana	Rw6G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	303
AciI	CCGC	2 cut(s)	216, 544
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	332, 465
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	243, 296, 353
AjiI	CACGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	4 cut(s)	49, 133, 221, 611
AluI	AGCT	4 cut(s)	49, 133, 221, 611
Alw26I	GTCTC	2 cut(s)	252, 327
AlwI	GGATC	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	303
ApeKI	GCWGC	5 cut(s)	28, 31, 218, 488, 608
ApoI	RAATTY	2 cut(s)	332, 465
AseI	ATTAAT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	242, 433, 485
AsuII	TTCGAA	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	97
BbvI	GCAGC	5 cut(s)	15, 18, 230, 475, 620
BccI	CCATC	1 cut(s)	558
BceAI	ACGGC	2 cut(s)	157, 499
BciT130I	CCWGG	1 cut(s)	617
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	252, 327
BfoI	RGCGCY	1 cut(s)	489
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	5 cut(s)	29, 32, 219, 489, 609
BlsI	GCNGC	5 cut(s)	30, 33, 220, 490, 610
Bme1390I	CCNGG	1 cut(s)	617
BmgBI	CACGTC	1 cut(s)	586
BmiI	GGNNCC	2 cut(s)	72, 548
BmrFI	CCNGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
Bpu14I	TTCGAA	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	578, 616
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	2 cut(s)	578, 616
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	609
BseXI	GCAGC	5 cut(s)	15, 18, 230, 475, 620
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	252, 327
BsmI	GAATGC	2 cut(s)	66, 241
Bsp119I	TTCGAA	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp13I	TCCGGA	1 cut(s)	303
Bsp143I	GATC	4 cut(s)	7, 300, 370, 375
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	2 cut(s)	216, 544
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	72, 548
BspPI	GGATC	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	578, 616
BssMI	GATC	4 cut(s)	7, 300, 370, 375
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	389, 479
Bst6I	CTCTTC	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	433, 437
BstDEI	CTNAG	2 cut(s)	255, 540
BstDSI	CCRYGG	1 cut(s)	578
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	4 cut(s)	10, 303, 373, 378
BstMAI	GTCTC	2 cut(s)	252, 327
BstMBI	GATC	4 cut(s)	7, 300, 370, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	615
BstV1I	GCAGC	5 cut(s)	15, 18, 230, 475, 620
BstX2I	RGATCY	2 cut(s)	300, 370
BstYI	RGATCY	2 cut(s)	300, 370
BtgI	CCRYGG	1 cut(s)	578
BtrI	CACGTC	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 394
Cac8I	GCNNGC	2 cut(s)	433, 437
CfoI	GCGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	5 cut(s)	35, 196, 344, 436, 579
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	255, 540
DpnI	GATC	4 cut(s)	9, 302, 372, 377
DpnII	GATC	4 cut(s)	7, 300, 370, 375
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	5 cut(s)	38, 199, 347, 439, 582
FatI	CATG	5 cut(s)	34, 195, 343, 435, 578
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	5 cut(s)	29, 32, 219, 489, 609
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	5 cut(s)	29, 32, 219, 489, 609
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	5 cut(s)	29, 32, 219, 489, 609
HaeII	RGCGCY	1 cut(s)	489
HapII	CCGG	1 cut(s)	304
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	38, 199, 347, 439, 582
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	3 cut(s)	179, 257, 536
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	3 cut(s)	242, 433, 485
Hpy188I	TCNGA	3 cut(s)	178, 262, 375
Hpy188III	TCNNGA	3 cut(s)	183, 304, 533
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	3 cut(s)	133, 301, 470
HpyCH4III	ACNGT	2 cut(s)	389, 479
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	4 cut(s)	34, 149, 407, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	255, 540
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	5 cut(s)	38, 199, 347, 439, 582
HspAI	GCGC	1 cut(s)	486
Kpn2I	TCCGGA	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	4 cut(s)	7, 300, 370, 375
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	5 cut(s)	15, 18, 230, 475, 620
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	122, 473, 479
MalI	GATC	4 cut(s)	9, 302, 372, 377
MboI	GATC	4 cut(s)	7, 300, 370, 375
MboII	GAAGA	2 cut(s)	296, 365
MflI	RGATCY	2 cut(s)	300, 370
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	5 cut(s)	332, 395, 444, 465, 528
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	3 cut(s)	225, 258, 349
MroI	TCCGGA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	54, 426
MspA1I	CMGCKG	2 cut(s)	221, 611
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	617
Mva1269I	GAATGC	2 cut(s)	66, 241
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	4 cut(s)	7, 300, 370, 375
NlaIII	CATG	5 cut(s)	38, 199, 347, 439, 582
NlaIV	GGNNCC	2 cut(s)	72, 548
NmuCI	GTSAC	2 cut(s)	473, 479
NspI	RCATGY	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	463
PaeI	GCATGC	1 cut(s)	439
PctI	GAATGC	2 cut(s)	66, 241
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	179, 536
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	30, 33, 220, 490, 610
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	72, 548
PsuI	RGATCY	2 cut(s)	300, 370
PvuII	CAGCTG	2 cut(s)	221, 611
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	54, 426
SatI	GCNGC	5 cut(s)	29, 32, 219, 489, 609
Sau3AI	GATC	4 cut(s)	7, 300, 370, 375
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	6 cut(s)	51, 135, 223, 462, 588, 613
SfaNI	GCATC	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	463
SphI	GCATGC	1 cut(s)	439
Sse9I	AATT	5 cut(s)	332, 395, 444, 465, 528
SsiI	CCGC	2 cut(s)	216, 544
SspI	AATATT	1 cut(s)	598
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	389, 479
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	4 cut(s)	463, 532, 588, 601
TasI	AATT	5 cut(s)	332, 395, 444, 465, 528
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	179, 536
Tru1I	TTAA	2 cut(s)	54, 426
Tru9I	TTAA	2 cut(s)	54, 426
TscAI	CASTG	2 cut(s)	366, 394
TseFI	GTSAC	2 cut(s)	473, 479
TseI	GCWGC	5 cut(s)	28, 31, 218, 488, 608
Tsp45I	GTSAC	2 cut(s)	473, 479
TspDTI	ATGAA	2 cut(s)	487, 492
TspRI	CASTG	2 cut(s)	366, 394
Van91I	CCANNNNNTGG	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	2 cut(s)	332, 465
XceI	RCATGY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.