Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006729

Physical Location & Seq

Genomic Coordinates Forward (+)

18910207 .. 18913357

Gene Structure 3151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGAACATTTGGCTATGTTGCACCAGAGTATGCTTGCACCGGAATGTTGAATGAGAAGAGTGATGTATATAGCTTTGGAATACTTATAATGGAGATAATATCTGGGAGAAACCCTGTTGATTATGGTCGGCCAAAAGGAGAGGTGAATCTAGTTGAATGGTTAAAAAACATGGTTGGAGACCGGAAAGCTGAGGAAGTAGTTGATCCTAAGTTGCCTGAGATGCCTGCTTCAAAAGCACTTAAACGTGCTCTGCTGGTTGCTCTTCGATGTGTTGATCCTGATGCCACAAAAAAGGCCAAAAAATGGGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

7.7

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 53	1e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 45	1.7e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34500
fragaria_vesca	FvH4_2g08720 FvH4_2g08720 FvH4_2g08720
malus_domestica	MD05G1067100.v1.1 MD10G1076700.v1.1
prunus_persica	Prupe.8G097500_v2.0.a1
pyrus_communis	pycom05g05790 pycom10g06000
rosa_chinensis	RchiOBHm_Chr6g0264191
rosa_laevigata	RLG00000014281
rosa_multiflora	Rmu_sc0005325.1_g000012 Rmu_sc0007214.1_g000014
rosa_roxburghii	Rroxscaffold_176G00431530 Rroxscaffold_176G00431580 Rroxscaffold_4G00299000 Rroxscaffold_7G00203440
rosa_rugosa	Rorug06G0009700 Rorug06G0009800
rosa_samantha	Rh6AG130100 Rh6BG125900 Rh6BG126900 Rh6BG127300 Rh6CG125800 Rh6DG112600
rosa_wichuraiana	Rw6G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	306
AclWI	GGATC	2 cut(s)	200, 272
AcoI	YGGCCR	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	52, 158, 234
AluBI	AGCT	2 cut(s)	75, 191
AluI	AGCT	2 cut(s)	75, 191
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	200, 272
AoxI	GGCC	2 cut(s)	131, 297
AsuHPI	GGTGA	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	253
BbvCI	CCTCAGC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	152
BmsI	GCATC	2 cut(s)	213, 274
Bpu10I	CCTNAGC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	41, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	183, 210
BshFI	GGCC	2 cut(s)	133, 299
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	42, 184
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	133, 299
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	205, 277
BspANI	GGCC	2 cut(s)	133, 299
BspCNI	CTCAG	2 cut(s)	184, 211
BspPI	GGATC	2 cut(s)	200, 272
BspQI	GCTCTTC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	174
BssMI	GATC	2 cut(s)	205, 277
Bst6I	CTCTTC	2 cut(s)	53, 270
BstC8I	GCNNGC	2 cut(s)	37, 228
BstDEI	CTNAG	3 cut(s)	192, 210, 219
BstKTI	GATC	2 cut(s)	208, 280
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	205, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 236
BstNSI	RCATGY	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	133, 299
Cac8I	GCNNGC	2 cut(s)	37, 228
CviAII	CATG	2 cut(s)	172, 313
CviJI	RGCY	5 cut(s)	15, 75, 133, 191, 299
CviKI_1	RGCY	5 cut(s)	15, 75, 133, 191, 299
DdeI	CTNAG	3 cut(s)	192, 210, 219
DpnI	GATC	2 cut(s)	207, 279
DpnII	GATC	2 cut(s)	205, 277
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	2 cut(s)	53, 270
EarI	CTCTTC	2 cut(s)	53, 270
Eco31I	GGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	175, 316
FaiI	YATR	8 cut(s)	18, 33, 70, 72, 89, 126, 173, 314
FatI	CATG	2 cut(s)	171, 312
FspBI	CTAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	133, 299
HapII	CCGG	2 cut(s)	42, 184
Hin1II	CATG	2 cut(s)	175, 316
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	42, 184
HphI	GGTGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	23, 39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 236
HpyF3I	CTNAG	3 cut(s)	192, 210, 219
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	175, 316
Kzo9I	GATC	2 cut(s)	205, 277
LguI	GCTCTTC	1 cut(s)	270
LpnPI	CCDG	9 cut(s)	39, 55, 90, 129, 197, 231, 240, 242, 294
LweI	GCATC	2 cut(s)	213, 274
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	247
MalI	GATC	2 cut(s)	207, 279
MboI	GATC	2 cut(s)	205, 277
MboII	GAAGA	2 cut(s)	70, 257
MhlI	GDGCHC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	136, 187
MseI	TTAA	2 cut(s)	164, 243
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	2 cut(s)	42, 184
MwoI	GCNNNNNNNGC	2 cut(s)	223, 236
NdeII	GATC	2 cut(s)	205, 277
NlaIII	CATG	2 cut(s)	175, 316
NspI	RCATGY	1 cut(s)	316
PciI	ACATGT	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	306
PscI	ACATGT	1 cut(s)	312
PsiI	TTATAA	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	164, 243
Sau3AI	GATC	2 cut(s)	205, 277
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	4 cut(s)	77, 147, 193, 250
SfaNI	GCATC	2 cut(s)	213, 274
SmiMI	CAYNNNNRTG	1 cut(s)	44
SspMI	CTAG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	164, 243
Tru9I	TTAA	2 cut(s)	164, 243
Van91I	CCANNNNNTGG	1 cut(s)	306
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.