Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Reverse (-)

16599597 .. 16606135

Gene Structure 6539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3270 bp

ATGGAGGTTACCTCCACCACCTTCATCTCCACTACCAGATCTTCTAAATACCTTACCTTAACTTCGTACTCTCCGGTGATTCTTCCGGCTTCTACTCTCCGCCGTGATTTTCTTGGTTGTTGTCATAGTCTCCGTCCTTCTCCTCATCTTCGAACTCGCGCCGGGAAACGCAATTCTCGTCGTTCTTCAATTCGATCGCCTCGTTTAGTTGTTAGAGCTTCTATCGATTCTGGTTTGATTCTTATTGTTGTTGCTGTCACTGCGTTCTCTGCCATTGCTTTCGCTTATTGCCAAAGTACTTTCAGGAAGCGGAAATCTTCCGATGAGGTTGCAACGGTTCATGGCGGAAAAAATAGTGCTGAGAATCGGCGGGAAATTCATGGAGATATTCATGAAGGCAATCCTGTGGAAATAAATGTAGGTTTCAGAAAGGTAGAGGAAGAAAGTGTGAATCTTTTGGAGGAAGAAAAGGCTCATCAAATCCATGAAGTTGCTGTGATGGATTATGATTCAGTTTCAGCTGAGGATTCTCAGTTTGCTGTTGCTAGTGTGACCACAGTTGCCACGGCACATACCTTAATAGATGAATCCTTTTCATCTTCTATTGTTAATGGGTCTGTTGCTTTGGAATCAGCTACCTTTGGAGTAAAAACACCTGAAAAACAAGTTGGAAATAGCGAAGATCAGAAGGGTTTGGAGCATGATTTTTCACAGGCAGTGGTGGGAATTCATTCGATTGCTTCTCCACAGGTGGTAGATGATACACGTGCTCTAGAGTATGAGTACAATGGTTTGCTCCAGAAGCCTCTCGAGTACAGCATCTTTGCCGAGAGTAAGAGAGAAGAGATTCACACATTCTATGGGTCTAATCATTCATCAGCCAAGTCATCACGGTTGCCAAGTCTTAAAGCCGTCTCTCCTGCTGTTACTTCTGCAACTAATAGTTTATTCCTGGACCACAAGAACAATGGAGTAATTGATACTCAGTTCCCAGGACAGAGTTCTGGTCAGGCTACTGGTGATGTGCAAGAAGAAAACCTTGTGGCACACAGTAACGGTGGTGTATCCCACATTAGGAAAGATGTTAAAGGAGACTGGAAATTTCCAAGTGATGGGAAGCATGTGGGTCACCAAATTGATGAAAGCATGCCCCAGTTCCCTGCTCGAAATTTTGAGCTACATAATAGTAATGGACGTTCTCCAGAAACTAGTGATGCTTACAACCGTTTACTTAGAGATGGAAGGATAAAGGATTGCATAAGCTTGCTCGAAGATTTGGACCAAAGGGATCTATTGGACATGGACAAGATTTATCATGCGAGTTTCTTTAAAGCCTGCAAGAAGCAAAGGGCTGTCAAGGAAGCATTTCGCTTTACCAAGTTGATTCTAAATCCAACCATGAGCACATTCAATATGTTAATGTCTGTCTGCGCAAGCTCCCAGGACATAGAAGGAGCTCGGGGAGTGTTACGTCTGGTACAAGAGAGCGGTATGACTGCTGATTGCAAACTTTACACAACTTTAATATCAAGTTGTGCTAAAAGTGGAAAAGTTGATGCAATGTTCGAGGTGTTCCACCAGATGTCAAATTCTGGAGTGGAAGCCAATCTTCACACATTTGGTGCACTTATTGATGGCTGTGCTAGAGCTGGACAAGTAGCTAAGGCATTTGGTGCGTATGGAATTTTAAGGTCTAAGAATGTTAAGCCAGACCGGGTTGTATTCAATGCCCTCATCTCTGCATGTGGTCAATCAGGAGCTGTCGACCGTGCTTTTGATGTGTTAGCTGAAATGAAGGCTGAGACGCACCCTATAGACCCTGATCATATCTCGATCGGTGCATTGATGAAAGCATGCTGTAATGCTGGTCAGGTCGAACGAGCAAAAGAAGTTTACCAGATGATCCATAAATATGGAATCAGGGGTACTCCAGAAGTGTATACCATTGCTGTGAATAGTTGCAGCAAGTCTGGGGACTGGGATTTTGCGTGTAGCATATACAAGGACATGAAAGAAAAAGACGTGACCCCTGACGAGGTGTTTTTTAGTGCATTGATTGATGTTGCAGGACATGCAAAAATGTTAGACGAGGCTTTTGGCATTCTTCAGGATGCAAAATCTCAAGGGATACGTCTTGGAACTATATCATATAGCTCACTGATGGGAGCTTGTTGTAACGCGAAAGATTGGAAGAAAGCACTGGAGCTCTATGAAAAAATCAAGTCAATCAAACTTAGACCAACAATTTCAACAATGAATGCCCTTATAACTGCTTTGTGTGAAGGTAATCAACTGCCCAAGGCTATGGAATATCTTGATGAGATAAAGACTTTAGGGTTAAAACCAAATACTATCACTTACTCTATGCTCATGCTGGCAAGTGAGAGAAAGGATGACTTTGAGGTAAGCTTTAAGCTCCTTTCTCAAGCAAAAGGAGATGGAGTATCACCAAACTTGATCATGTGCAGATGCATAACCAGCCTATGCAAACGAAGGTTTGAGAAAGCTTGCGCTGGTGGTGAACCTGTTGTGTCCTTCAAATCAGGGCGCCCTCAAATTGAAAATAAATGGACATCAATGGCTTTGATGGTTTACCGCGAGACAATTTCAGGTGGAACGGTTCCTACTACAGAAGTAGTTTCACAAGTTTTGGGGTGCTTGCAACTTCCACATGATGCTGCTTTGCGGGATAGGCTGATTTCGACTTTAGGCATAAACATTTCTTCACAAAAACAACATAACATATTCCCACTAGTCGATGGATTTGGAGAGTATGATCCTCGTGCATTTTCACTGCTTGAGGAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTCATTCAATAAAATTCCACTATTTTTTGACACGACAGAATTGCCGAAAAACGTTGCTGAGGTTTACCTGTTAACCATCTTTAAAGGTCTTAAGCATCGCCTTGCTGCTGGTGCGAAGATACCTCACATTAATTTGATCATTTCCATTCAAGAGAAGGAAATTAGGACTCCTGAAGGAGAGAAGACAATTGACCTTACAGGAAGGGTCGGACAGGAAATTGGTGCATTGTTGAGAAGGTTAGATATACCATATCATAGAAAGGATTCAAGATTAAGAATCAATGGTGTTTCTTTGAAGAACTGGTTTCAACCAAAGCTCGATTCGCCATTCTCTGGTGGGAAACCAGGGGATTTAAGATCATCGCAAGTACCATTAGGAAACCAAATCAGTCGTCAGCAACGCAGCATTCGACTAGGGAACCTGTCACTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1089

Amino Acids

119.77

Weight (kDa)

8.06

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	468 - 638	5.4e-15	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	489 - 547	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	504 - 549	2.2e-11	PPR repeat family
PPR	PF01535	505 - 533	6.9e-06	PPR repeat
TPR_24	PF23276	509 - 634	3.6e-14	Fungal tetratrico peptide repeats
PPR_3	PF13812	524 - 584	8.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	566 - 599	1.1e-06	PPR repeat
PPR_2	PF13041	570 - 621	5e-08	PPR repeat family
PPR_long	PF17177	646 - 807	3.3e-14	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	701 - 758	6.4e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	706 - 781	5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	714 - 760	1.3e-08	PPR repeat family
PPR_2	PF13041	747 - 791	1.4e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2267
Acc16I	TGCGCA	1 cut(s)	1432
AccB1I	GGYRCC	1 cut(s)	2547
AccB7I	CCANNNNNTGG	2 cut(s)	1112, 3167
AccBSI	CCGCTC	1 cut(s)	1488
AccI	GTMKAC	2 cut(s)	1764, 1940
AccII	CGCG	3 cut(s)	159, 2180, 2598
AciI	CCGC	7 cut(s)	100, 310, 345, 370, 1488, 2596, 2686
AclI	AACGTT	1 cut(s)	2886
AclWI	GGATC	3 cut(s)	1296, 1897, 2771
AcsI	RAATTY	7 cut(s)	375, 726, 1100, 1168, 1588, 1683, 2847
AcuI	CTGAAG	2 cut(s)	2090, 3027
AcvI	CACGTG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	2548
AfaI	GTAC	7 cut(s)	68, 298, 785, 815, 1479, 1927, 3204
AfiI	CCNNNNNNNGG	4 cut(s)	1074, 1112, 2035, 3167
AflII	CTTAAG	1 cut(s)	2924
AflIII	ACRYGT	1 cut(s)	764
AhlI	ACTAGT	2 cut(s)	1208, 2752
AjiI	CACGTC	1 cut(s)	2023
AjnI	CCWGG	4 cut(s)	951, 991, 1440, 3178
AjuI	GAANNNNNNNTTGG	4 cut(s)	651, 683, 3139, 3171
AleI	CACNNNNGTG	1 cut(s)	3265
Alw21I	GWGCWC	5 cut(s)	772, 1406, 1459, 1627, 2208
Alw26I	GTCTC	5 cut(s)	134, 919, 1086, 1796, 2594
Alw44I	GTGCAC	1 cut(s)	1623
AlwI	GGATC	3 cut(s)	1296, 1897, 2771
AlwNI	CAGNNNCTG	1 cut(s)	1760
Ama87I	CYCGRG	2 cut(s)	809, 1458
ApaLI	GTGCAC	1 cut(s)	1623
ApeKI	GCWGC	4 cut(s)	1962, 2678, 2939, 3237
ApoI	RAATTY	7 cut(s)	375, 726, 1100, 1168, 1588, 1683, 2847
ArsI	GACNNNNNNTTYG	8 cut(s)	1757, 1789, 1967, 1999, 2078, 2110, 3211, 3243
AseI	ATTAAT	1 cut(s)	2964
Asp700I	GAANNNNTTC	4 cut(s)	730, 846, 1365, 3097
AspLEI	GCGC	4 cut(s)	161, 1433, 2513, 2550
AspS9I	GGNCC	2 cut(s)	955, 1279
AsuC2I	CCSGG	2 cut(s)	163, 1715
AsuHPI	GGTGA	5 cut(s)	88, 1031, 1121, 2439, 2531
AsuII	TTCGAA	1 cut(s)	151
AvaI	CYCGRG	2 cut(s)	809, 1458
AvaII	GGWCC	2 cut(s)	955, 1279
BaeGI	GKGCMC	1 cut(s)	1627
BanI	GGYRCC	1 cut(s)	2547
BanII	GRGCYC	2 cut(s)	1459, 2208
BauI	CACGAG	1 cut(s)	2781
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	3023
Bbv12I	GWGCWC	5 cut(s)	772, 1406, 1459, 1627, 2208
BbvCI	CCTCAGC	2 cut(s)	522, 2892
BbvI	GCAGC	4 cut(s)	1974, 2665, 2926, 3249
BccI	CCATC	9 cut(s)	493, 1106, 1232, 1628, 2155, 2432, 2581, 2753, 2918
BceAI	ACGGC	3 cut(s)	87, 582, 896
BcgI	CGANNNNNNTGC	4 cut(s)	311, 345, 2857, 2891
BciT130I	CCWGG	4 cut(s)	953, 993, 1442, 3180
BciVI	GTATCC	2 cut(s)	1075, 2121
BclI	TGATCA	3 cut(s)	1822, 2457, 2970
BcnI	CCSGG	2 cut(s)	163, 1715
BcoDI	GTCTC	5 cut(s)	134, 919, 1086, 1796, 2594
BcuI	ACTAGT	2 cut(s)	1208, 2752
BfaI	CTAG	6 cut(s)	546, 773, 1209, 1644, 2753, 3248
BfmI	CTRYAG	2 cut(s)	1812, 2628
BfoI	RGCGCY	1 cut(s)	2551
BfrI	CTTAAG	1 cut(s)	2924
BfuI	GTATCC	2 cut(s)	1075, 2121
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	4 cut(s)	1963, 2679, 2940, 3238
BlsI	GCNGC	4 cut(s)	1964, 2680, 2941, 3239
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	6 cut(s)	163, 953, 993, 1442, 1715, 3180
Bme18I	GGWCC	2 cut(s)	955, 1279
BmeT110I	CYCGRG	2 cut(s)	809, 1458
BmgBI	CACGTC	1 cut(s)	2023
BmgT120I	GGNCC	2 cut(s)	955, 1279
BmiI	GGNNCC	3 cut(s)	2549, 2622, 3254
BmrFI	CCNGG	6 cut(s)	163, 953, 993, 1442, 1715, 3180
BmrI	ACTGGG	2 cut(s)	1147, 1987
BmsI	GCATC	7 cut(s)	828, 1204, 1546, 2101, 2459, 2665, 2938
BmuI	ACTGGG	2 cut(s)	1147, 1987
BpiI	GAAGAC	1 cut(s)	3023
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	5 cut(s)	782, 1185, 1614, 1914, 2222
Bpu10I	CCTNAGC	3 cut(s)	522, 1662, 2892
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	3 cut(s)	2106, 2409, 2819
BpuMI	CCSGG	2 cut(s)	163, 1715
Bsa29I	ATCGAT	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	767
BsaHI	GRCGYC	1 cut(s)	2548
BsaJI	CCNNGG	5 cut(s)	564, 991, 1440, 2298, 3179
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	2427, 2457
Bsc4I	CCNNNNNNNGG	4 cut(s)	1074, 1112, 2035, 3167
Bse1I	ACTGG	6 cut(s)	1021, 1100, 1153, 1982, 2205, 3140
Bse3DI	GCAATG	3 cut(s)	273, 1566, 1944
BseBI	CCWGG	4 cut(s)	953, 993, 1442, 3180
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	5 cut(s)	564, 991, 1440, 2298, 3179
BseGI	GGATG	2 cut(s)	2116, 2398
BseLI	CCNNNNNNNGG	4 cut(s)	1074, 1112, 2035, 3167
BseMI	GCAATG	3 cut(s)	273, 1566, 1944
BseMII	CTCAG	6 cut(s)	351, 513, 545, 998, 1791, 2883
BseNI	ACTGG	6 cut(s)	1021, 1100, 1153, 1982, 2205, 3140
BseRI	GAGGAG	2 cut(s)	132, 2816
BseSI	GKGCMC	1 cut(s)	1627
BseXI	GCAGC	4 cut(s)	1974, 2665, 2926, 3249
BsgI	GTGCAG	1 cut(s)	2485
Bsh1236I	CGCG	3 cut(s)	159, 2180, 2598
Bsh1285I	CGRYCG	3 cut(s)	197, 1768, 1836
BshNI	GGYRCC	1 cut(s)	2547
BshVI	ATCGAT	1 cut(s)	225
BsiEI	CGRYCG	3 cut(s)	197, 1768, 1836
BsiHKAI	GWGCWC	5 cut(s)	772, 1406, 1459, 1627, 2208
BsiHKCI	CYCGRG	2 cut(s)	809, 1458
BsiSI	CCGG	4 cut(s)	74, 86, 162, 1714
BslFI	GGGAC	1 cut(s)	1988
BslI	CCNNNNNNNGG	4 cut(s)	1074, 1112, 2035, 3167
BsmAI	GTCTC	5 cut(s)	134, 919, 1086, 1796, 2594
BsmBI	CGTCTC	2 cut(s)	919, 1796
BsmFI	GGGAC	1 cut(s)	1988
BsmI	GAATGC	3 cut(s)	2100, 2263, 3240
BsoBI	CYCGRG	2 cut(s)	809, 1458
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	5 cut(s)	772, 1406, 1459, 1627, 2208
BspACI	CCGC	7 cut(s)	100, 310, 345, 370, 1488, 2596, 2686
BspCNI	CTCAG	6 cut(s)	352, 514, 544, 997, 1792, 2884
BspDI	ATCGAT	1 cut(s)	225
BspFNI	CGCG	3 cut(s)	159, 2180, 2598
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	3 cut(s)	2549, 2622, 3254
BspPI	GGATC	3 cut(s)	1296, 1897, 2771
BspT104I	TTCGAA	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	2547
BspTI	CTTAAG	1 cut(s)	2924
BsrBI	CCGCTC	1 cut(s)	1488
BsrDI	GCAATG	3 cut(s)	273, 1566, 1944
BsrI	ACTGG	6 cut(s)	1021, 1100, 1153, 1982, 2205, 3140
BssECI	CCNNGG	5 cut(s)	564, 991, 1440, 2298, 3179
BssNAI	GTATAC	1 cut(s)	1941
BssNI	GRCGYC	1 cut(s)	2548
BssSI	CACGAG	1 cut(s)	2781
BssT1I	CCWWGG	1 cut(s)	2298
Bst1107I	GTATAC	1 cut(s)	1941
Bst2BI	CACGAG	1 cut(s)	2781
Bst2UI	CCWGG	4 cut(s)	953, 993, 1442, 3180
Bst4CI	ACNGT	8 cut(s)	337, 559, 894, 1052, 1058, 1226, 1769, 2620
Bst6I	CTCTTC	1 cut(s)	837
BstACI	GRCGYC	1 cut(s)	2548
BstAFI	CTTAAG	1 cut(s)	2924
BstAPI	GCANNNNNTGC	2 cut(s)	1673, 2072
BstBAI	YACGTR	1 cut(s)	767
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	8 cut(s)	1148, 1265, 1336, 1435, 1855, 2376, 2509, 2660
BstDSI	CCRYGG	1 cut(s)	564
BstEII	GGTNACC	2 cut(s)	7, 1127
BstF5I	GGATG	2 cut(s)	2116, 2398
BstFNI	CGCG	3 cut(s)	159, 2180, 2598
BstH2I	RGCGCY	1 cut(s)	2551
BstHHI	GCGC	4 cut(s)	161, 1433, 2513, 2550
BstMAI	GTCTC	5 cut(s)	134, 919, 1086, 1796, 2594
BstMCI	CGRYCG	3 cut(s)	197, 1768, 1836
BstMWI	GCNNNNNNNGC	9 cut(s)	260, 269, 802, 1673, 2072, 2478, 2692, 2945, 3157
BstNI	CCWGG	4 cut(s)	953, 993, 1442, 3180
BstNSI	RCATGY	5 cut(s)	1124, 1150, 1746, 1857, 2075
BstPI	GGTNACC	2 cut(s)	7, 1127
BstSCI	CCNGG	6 cut(s)	161, 951, 991, 1440, 1713, 3178
BstSFI	CTRYAG	2 cut(s)	1812, 2628
BstSLI	GKGCMC	1 cut(s)	1627
BstUI	CGCG	3 cut(s)	159, 2180, 2598
BstV1I	GCAGC	4 cut(s)	1974, 2665, 2926, 3249
BstV2I	GAAGAC	1 cut(s)	3023
BstX2I	RGATCY	2 cut(s)	38, 1288
BstXI	CCANNNNNNTGG	2 cut(s)	1913, 2305
BstYI	RGATCY	2 cut(s)	38, 1288
BstZ17I	GTATAC	1 cut(s)	1941
Bsu15I	ATCGAT	1 cut(s)	225
BsuI	GTATCC	2 cut(s)	1075, 2121
BsuTUI	ATCGAT	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	564
BtgZI	GCGATG	2 cut(s)	2915, 3180
BtrI	CACGTC	1 cut(s)	2023
BtsCI	GGATG	2 cut(s)	2116, 2398
BtsI	GCAGTG	3 cut(s)	258, 723, 2792
BtsIMutI	CAGTG	5 cut(s)	258, 723, 2156, 2198, 2792
Cac8I	GCNNGC	8 cut(s)	1148, 1265, 1336, 1435, 1855, 2376, 2509, 2660
CaiI	CAGNNNCTG	1 cut(s)	1760
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	4 cut(s)	161, 1433, 2513, 2550
Cfr13I	GGNCC	2 cut(s)	955, 1279
ClaI	ATCGAT	1 cut(s)	225
CseI	GACGC	1 cut(s)	1813
Csp6I	GTAC	7 cut(s)	67, 297, 784, 814, 1478, 1926, 3203
CviQI	GTAC	7 cut(s)	67, 297, 784, 814, 1478, 1926, 3203
DinI	GGCGCC	1 cut(s)	2549
DraI	TTTAAA	2 cut(s)	1330, 2917
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
EciI	GGCGGA	2 cut(s)	89, 360
Ecl136II	GAGCTC	2 cut(s)	1457, 2206
Eco130I	CCWWGG	1 cut(s)	2298
Eco24I	GRGCYC	2 cut(s)	1459, 2208
Eco47I	GGWCC	2 cut(s)	955, 1279
Eco53kI	GAGCTC	2 cut(s)	1457, 2206
Eco57I	CTGAAG	2 cut(s)	2090, 3027
Eco72I	CACGTG	1 cut(s)	767
Eco88I	CYCGRG	2 cut(s)	809, 1458
Eco91I	GGTNACC	2 cut(s)	7, 1127
EcoICRI	GAGCTC	2 cut(s)	1457, 2206
EcoO65I	GGTNACC	2 cut(s)	7, 1127
EcoRI	GAATTC	1 cut(s)	726
EcoRII	CCWGG	4 cut(s)	951, 991, 1440, 3178
EcoT14I	CCWWGG	1 cut(s)	2298
EcoT22I	ATGCAT	1 cut(s)	2474
EcoT38I	GRGCYC	2 cut(s)	1459, 2208
EgeI	GGCGCC	1 cut(s)	2549
EheI	GGCGCC	1 cut(s)	2549
ErhI	CCWWGG	1 cut(s)	2298
Esp3I	CGTCTC	2 cut(s)	919, 1796
FalI	AAGNNNNNCTT	6 cut(s)	1023, 1055, 1593, 1625, 2381, 2413
FaqI	GGGAC	1 cut(s)	1988
FauI	CCCGC	2 cut(s)	363, 2679
FbaI	TGATCA	3 cut(s)	1822, 2457, 2970
FblI	GTMKAC	2 cut(s)	1764, 1940
Fnu4HI	GCNGC	4 cut(s)	1963, 2679, 2940, 3238
FokI	GGATG	2 cut(s)	2123, 2405
FriOI	GRGCYC	2 cut(s)	1459, 2208
Fsp4HI	GCNGC	4 cut(s)	1963, 2679, 2940, 3238
FspBI	CTAG	6 cut(s)	546, 773, 1209, 1644, 2753, 3248
FspI	TGCGCA	1 cut(s)	1432
GlaI	GCGC	4 cut(s)	160, 1432, 2512, 2549
GluI	GCNGC	4 cut(s)	1963, 2679, 2940, 3238
GsuI	CTGGAG	5 cut(s)	782, 1185, 1614, 1914, 2222
HaeII	RGCGCY	1 cut(s)	2551
HapII	CCGG	4 cut(s)	74, 86, 162, 1714
HgaI	GACGC	1 cut(s)	1813
HhaI	GCGC	4 cut(s)	161, 1433, 2513, 2550
Hin1I	GRCGYC	1 cut(s)	2548
Hin6I	GCGC	4 cut(s)	159, 1431, 2511, 2548
HinP1I	GCGC	4 cut(s)	159, 1431, 2511, 2548
HincII	GTYRAC	2 cut(s)	1765, 2907
HindII	GTYRAC	2 cut(s)	1765, 2907
HindIII	AAGCTT	3 cut(s)	1261, 2407, 2505
HpaI	GTTAAC	1 cut(s)	2907
HpaII	CCGG	4 cut(s)	74, 86, 162, 1714
HphI	GGTGA	5 cut(s)	88, 1031, 1121, 2439, 2531
Hpy166II	GTNNAC	9 cut(s)	1229, 1625, 1765, 1894, 1941, 2522, 2593, 2899, 2907
Hpy188I	TCNGA	4 cut(s)	322, 428, 687, 3044
Hpy8I	GTNNAC	9 cut(s)	1229, 1625, 1765, 1894, 1941, 2522, 2593, 2899, 2907
Hpy99I	CGWCG	1 cut(s)	183
HpyCH4III	ACNGT	8 cut(s)	337, 559, 894, 1052, 1058, 1226, 1769, 2620
HpyCH4IV	ACGT	6 cut(s)	766, 1195, 1471, 2022, 2131, 2886
HpyF10VI	GCNNNNNNNGC	9 cut(s)	260, 269, 802, 1673, 2072, 2478, 2692, 2945, 3157
HpySE526I	ACGT	6 cut(s)	766, 1195, 1471, 2022, 2131, 2886
Hsp92I	GRCGYC	1 cut(s)	2548
HspAI	GCGC	4 cut(s)	159, 1431, 2511, 2548
KasI	GGCGCC	1 cut(s)	2547
Ksp22I	TGATCA	3 cut(s)	1822, 2457, 2970
KspAI	GTTAAC	1 cut(s)	2907
LmnI	GCTCC	8 cut(s)	697, 801, 1442, 1454, 1757, 2165, 2203, 2421
Lsp1109I	GCAGC	4 cut(s)	1974, 2665, 2926, 3249
LweI	GCATC	7 cut(s)	828, 1204, 1546, 2101, 2459, 2665, 2938
MaeI	CTAG	6 cut(s)	546, 773, 1209, 1644, 2753, 3248
MaeII	ACGT	6 cut(s)	766, 1195, 1471, 2022, 2131, 2886
MbiI	CCGCTC	1 cut(s)	1488
MfeI	CAATTG	1 cut(s)	3021
MflI	RGATCY	2 cut(s)	38, 1288
MhlI	GDGCHC	5 cut(s)	772, 1406, 1459, 1627, 2208
Mly113I	GGCGCC	1 cut(s)	2548
MlyI	GAGTC	1 cut(s)	2995
MmeI	TCCRAC	3 cut(s)	649, 1418, 3022
Mph1103I	ATGCAT	1 cut(s)	2474
MroXI	GAANNNNTTC	4 cut(s)	730, 846, 1365, 3097
MslI	CAYNNNNRTG	3 cut(s)	1911, 1949, 3265
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	2924
MspI	CCGG	4 cut(s)	74, 86, 162, 1714
MspR9I	CCNGG	6 cut(s)	163, 953, 993, 1442, 1715, 3180
MunI	CAATTG	1 cut(s)	3021
Mva1269I	GAATGC	3 cut(s)	2100, 2263, 3240
MvaI	CCWGG	4 cut(s)	953, 993, 1442, 3180
MvnI	CGCG	3 cut(s)	159, 2180, 2598
MwoI	GCNNNNNNNGC	9 cut(s)	260, 269, 802, 1673, 2072, 2478, 2692, 2945, 3157
NarI	GGCGCC	1 cut(s)	2548
NciI	CCSGG	2 cut(s)	163, 1715
NlaIV	GGNNCC	3 cut(s)	2549, 2622, 3254
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	5 cut(s)	256, 550, 1127, 2023, 3258
NsbI	TGCGCA	1 cut(s)	1432
NsiI	ATGCAT	1 cut(s)	2474
NspI	RCATGY	5 cut(s)	1124, 1150, 1746, 1857, 2075
NspV	TTCGAA	1 cut(s)	151
OliI	CACNNNNGTG	1 cut(s)	3265
PaeI	GCATGC	2 cut(s)	1150, 1857
PaeR7I	CTCGAG	1 cut(s)	809
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	3 cut(s)	175, 199, 3241
PctI	GAATGC	3 cut(s)	2100, 2263, 3240
PdmI	GAANNNNTTC	4 cut(s)	730, 846, 1365, 3097
PflMI	CCANNNNNTGG	2 cut(s)	1112, 3167
PfoI	TCCNGGA	1 cut(s)	951
PkrI	GCNGC	4 cut(s)	1964, 2680, 2941, 3239
Ple19I	CGATCG	2 cut(s)	197, 1836
PleI	GAGTC	1 cut(s)	2995
PluTI	GGCGCC	1 cut(s)	2551
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	2995
Ppu21I	YACGTR	1 cut(s)	767
PshBI	ATTAAT	1 cut(s)	2964
PsiI	TTATAA	1 cut(s)	2267
Psp124BI	GAGCTC	2 cut(s)	1459, 2208
Psp1406I	AACGTT	1 cut(s)	2886
Psp6I	CCWGG	4 cut(s)	951, 991, 1440, 3178
PspCI	CACGTG	1 cut(s)	767
PspEI	GGTNACC	2 cut(s)	7, 1127
PspGI	CCWGG	4 cut(s)	951, 991, 1440, 3178
PspN4I	GGNNCC	3 cut(s)	2549, 2622, 3254
PspPI	GGNCC	2 cut(s)	955, 1279
PsrI	GAACNNNNNNTAC	4 cut(s)	1180, 1212, 2608, 2640
PstNI	CAGNNNCTG	1 cut(s)	1760
PsuI	RGATCY	2 cut(s)	38, 1288
PvuI	CGATCG	2 cut(s)	197, 1836
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	7 cut(s)	68, 298, 785, 815, 1479, 1927, 3204
RsaNI	GTAC	7 cut(s)	67, 297, 784, 814, 1478, 1926, 3203
RseI	CAYNNNNRTG	3 cut(s)	1911, 1949, 3265
SacI	GAGCTC	2 cut(s)	1459, 2208
SalI	GTCGAC	1 cut(s)	1763
SatI	GCNGC	4 cut(s)	1963, 2679, 2940, 3238
Sau96I	GGNCC	2 cut(s)	955, 1279
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	1 cut(s)	2995
ScrFI	CCNGG	6 cut(s)	163, 953, 993, 1442, 1715, 3180
SduI	GDGCHC	5 cut(s)	772, 1406, 1459, 1627, 2208
SfaNI	GCATC	7 cut(s)	828, 1204, 1546, 2101, 2459, 2665, 2938
SfcI	CTRYAG	2 cut(s)	1812, 2628
SfoI	GGCGCC	1 cut(s)	2549
Sfr274I	CTCGAG	1 cut(s)	809
SfuI	TTCGAA	1 cut(s)	151
SinI	GGWCC	2 cut(s)	955, 1279
SlaI	CTCGAG	1 cut(s)	809
SmiMI	CAYNNNNRTG	3 cut(s)	1911, 1949, 3265
SmlI	CTYRAG	6 cut(s)	809, 2121, 2424, 2798, 2924, 3263
SmoI	CTYRAG	6 cut(s)	809, 2121, 2424, 2798, 2924, 3263
SpeI	ACTAGT	2 cut(s)	1208, 2752
SphI	GCATGC	2 cut(s)	1150, 1857
SsiI	CCGC	7 cut(s)	100, 310, 345, 370, 1488, 2596, 2686
SspDI	GGCGCC	1 cut(s)	2547
SspMI	CTAG	6 cut(s)	546, 773, 1209, 1644, 2753, 3248
SstI	GAGCTC	2 cut(s)	1459, 2208
StyD4I	CCNGG	6 cut(s)	161, 951, 991, 1440, 1713, 3178
StyI	CCWWGG	1 cut(s)	2298
TaaI	ACNGT	8 cut(s)	337, 559, 894, 1052, 1058, 1226, 1769, 2620
TaiI	ACGT	6 cut(s)	769, 1198, 1474, 2025, 2134, 2889
TatI	WGTACW	3 cut(s)	296, 783, 813
TscAI	CASTG	5 cut(s)	265, 723, 2163, 2205, 2799
TseFI	GTSAC	5 cut(s)	256, 550, 1127, 2023, 3258
TseI	GCWGC	4 cut(s)	1962, 2678, 2939, 3237
Tsp45I	GTSAC	5 cut(s)	256, 550, 1127, 2023, 3258
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	5 cut(s)	265, 723, 2163, 2205, 2799
Van91I	CCANNNNNTGG	2 cut(s)	1112, 3167
Vha464I	CTTAAG	1 cut(s)	2924
VneI	GTGCAC	1 cut(s)	1623
VpaK11BI	GGWCC	2 cut(s)	955, 1279
VspI	ATTAAT	1 cut(s)	2964
XapI	RAATTY	7 cut(s)	375, 726, 1100, 1168, 1588, 1683, 2847
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	5 cut(s)	1124, 1150, 1746, 1857, 2075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	965
XhoI	CTCGAG	1 cut(s)	809
XmiI	GTMKAC	2 cut(s)	1764, 1940
XmnI	GAANNNNTTC	4 cut(s)	730, 846, 1365, 3097
XspI	CTAG	6 cut(s)	546, 773, 1209, 1644, 2753, 3248
ZrmI	AGTACT	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	2474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.