Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8211740.1

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 526

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8211740.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 331 bp

gttatccgattctttgagattgcttgaagatttggagaaaaaggatttgttggatatgaataaggtttatcatggaaggttttttgaaacctgcaaaaagaaaaaggctgttgatcaagcttttcgtttcatcaaactgattccaaatccaacaatgagtacatataatatgcttatgtctgtctgtgcgagtgctcaagattcagagggtgctttcaatgttctgggacttgtccgggaggctgggctaagagttgattgcaaactttacactactctgatatcaacatgtgcgaaaagtggaaaagtctacactatgtttgatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

109

Amino Acids

12.33

Weight (kDa)

8.7

Isoelectric Point (pI)

22.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	310
AfaI	GTAC	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	27, 87, 218
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw21I	GWGCWC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	99
BssMI	GATC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	235
BveI	ACCTGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	2 cut(s)	72, 289
CviJI	RGCY	4 cut(s)	108, 120, 243, 248
CviKI_1	RGCY	4 cut(s)	108, 120, 243, 248
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	2 cut(s)	75, 292
FaiI	YATR	9 cut(s)	57, 73, 164, 166, 171, 177, 290, 318, 329
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	71, 288
FbaI	TGATCA	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	310
GsaI	CCCAGC	1 cut(s)	247
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	2 cut(s)	75, 292
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	3 cut(s)	9, 140, 201
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	8, 206, 280
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	94, 262
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	75, 292
Ksp22I	TGATCA	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	113
LpnPI	CCDG	4 cut(s)	104, 210, 229, 249
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	31, 174
MnlI	CCTC	2 cut(s)	200, 233
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	237
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	75, 292
NspI	RCATGY	1 cut(s)	292
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	9, 140, 201
PfoI	TCCNGGA	1 cut(s)	235
PscI	ACATGT	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	243
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	4 cut(s)	67, 81, 93, 122
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	235
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	9, 140, 201
TspDTI	ATGAA	2 cut(s)	72, 119
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.