Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018377.1

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Reverse (-)

147 .. 1408

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018377.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgagcttctcagcaaagccacagccactcgccctaatctcatgcacgcctcactcccgctccctccgccgcgacttcctcgggtgcccccacagcctccgccccctcgccggcggcctcaggtcgctgagaaagaaccggagcctcgccggcgccggcggacgtcagaatccgccgccgcggttgttgattaaagcgtcgctcggttctcacccgattctggtgttggtcgcggtggtgacgttctcggcggtttctattgtctacttcaatcggtcggtgaagcggaagaagagagaggttagtggtggagttgaagttccggtggaagatcagagtattgattttgatgctttgaaagatgagattagagaggcgagggaggaggaagaggcttcttcttcttcttctccggttctgcagtttcacaattcgtctgtgatttctgctcaggagtcgtcgtcgtctctttcaccgttggtgtttgaatccacggctgtgcttcagccacttcattttccgacggaagtcactgagtttgataaactcgggcctcttttcgagttgccgaatctgatgggggactctgattttggttctgtgactgtgagtgatgaggaaaccgtcactgagtcaccgtctgtgtctgaaagtgatgaggagagcagtgaggttggtgaagctaatggctttcgattaagtaatggagaatcgaatagagaagagattcacatgctctatgaggccaataagtctgagatgaagttggatgataataagttttcttcgtttctgagagatagcaccctcacaagatcagattcgtttccacaagtttcccatcacagtactacagagaatgtagaaggcaaaatacccaatcacaaagaaggccatgtccgcagcagaaaagacttgggaaacggcaatggatataatggacatgtagcagataaagaactaagatatttgcctaaaaagaaccataagactgtgccccaaccgaatggaatacatacaagcgacacacattatgtttctgagcaattaagtgcttaccatcgattgctgaaggatgggaggtacatgttatctttctcatctctgttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

370

Amino Acids

40.83

Weight (kDa)

6.03

Isoelectric Point (pI)

64.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1111
AatII	GACGTC	1 cut(s)	166
AccB1I	GGYRCC	2 cut(s)	84, 152
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	3 cut(s)	72, 181, 233
AcuI	CTGAAG	2 cut(s)	488, 1091
AcyI	GRCGYC	2 cut(s)	153, 163
AfaI	GTAC	2 cut(s)	850, 1085
AfiI	CCNNNNNNNGG	2 cut(s)	110, 220
AflIII	ACRYGT	2 cut(s)	943, 1086
AgsI	TTSAA	4 cut(s)	271, 317, 358, 488
AleI	CACNNNNGTG	1 cut(s)	497
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	2 cut(s)	6, 683
AluI	AGCT	2 cut(s)	6, 683
Alw26I	GTCTC	1 cut(s)	471
Ama87I	CYCGRG	2 cut(s)	80, 548
AoxI	GGCC	4 cut(s)	115, 551, 744, 892
ApeKI	GCWGC	1 cut(s)	903
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	6 cut(s)	203, 250, 292, 465, 627, 689
AvaI	CYCGRG	2 cut(s)	80, 548
AxyI	CCTNAGG	1 cut(s)	119
BaeGI	GKGCMC	2 cut(s)	89, 999
BanI	GGYRCC	2 cut(s)	84, 152
BarI	GAAGNNNNNNTAC	2 cut(s)	858, 890
BbvI	GCAGC	1 cut(s)	915
BccI	CCATC	4 cut(s)	571, 849, 1068, 1070
BceAI	ACGGC	2 cut(s)	510, 940
BcoDI	GTCTC	1 cut(s)	471
BfmI	CTRYAG	2 cut(s)	419, 852
BfoI	RGCGCY	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	150
BisI	GCNGC	5 cut(s)	70, 115, 176, 179, 904
BlsI	GCNGC	5 cut(s)	71, 116, 177, 180, 905
BmcAI	AGTACT	1 cut(s)	850
BmeT110I	CYCGRG	2 cut(s)	80, 548
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	3 cut(s)	86, 143, 154
BmsI	GCATC	1 cut(s)	340
BoxI	GACNNNNGTC	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	1063
BsaHI	GRCGYC	2 cut(s)	153, 163
BsaJI	CCNNGG	3 cut(s)	79, 179, 492
BsaWI	WCCGGW	3 cut(s)	138, 322, 412
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 303, 333, 446, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 220
Bse118I	RCCGGY	3 cut(s)	110, 149, 155
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	934
BseCI	ATCGAT	1 cut(s)	1063
BseDI	CCNNGG	3 cut(s)	79, 179, 492
BseGI	GGATG	2 cut(s)	775, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	110, 220
BseMI	GCAATG	1 cut(s)	934
BseMII	CTCAG	9 cut(s)	24, 119, 133, 464, 525, 621, 747, 785, 1032
BseRI	GAGGAG	2 cut(s)	398, 674
BseSI	GKGCMC	2 cut(s)	89, 999
BseXI	GCAGC	1 cut(s)	915
Bsh1236I	CGCG	3 cut(s)	72, 181, 233
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	4 cut(s)	117, 553, 746, 894
BshNI	GGYRCC	2 cut(s)	84, 152
BshVI	ATCGAT	1 cut(s)	1063
BsiEI	CGRYCG	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	80, 548
BsiSI	CCGG	6 cut(s)	111, 139, 150, 156, 323, 413
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	110, 220
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	4 cut(s)	117, 553, 746, 894
BsoBI	CYCGRG	2 cut(s)	80, 548
Bsp1286I	GDGCHC	2 cut(s)	89, 999
Bsp143I	GATC	2 cut(s)	331, 815
BspANI	GGCC	4 cut(s)	117, 553, 746, 894
BspCNI	CTCAG	9 cut(s)	23, 120, 132, 463, 526, 622, 748, 786, 1033
BspDI	ATCGAT	1 cut(s)	1063
BspFNI	CGCG	3 cut(s)	72, 181, 233
BspLI	GGNNCC	3 cut(s)	86, 143, 154
BspMAI	CTGCAG	1 cut(s)	423
BspT107I	GGYRCC	2 cut(s)	84, 152
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	934
BsrFI	RCCGGY	3 cut(s)	110, 149, 155
BssAI	RCCGGY	3 cut(s)	110, 149, 155
BssECI	CCNNGG	3 cut(s)	79, 179, 492
BssMI	GATC	2 cut(s)	331, 815
BssNI	GRCGYC	2 cut(s)	153, 163
Bst4CI	ACNGT	6 cut(s)	477, 607, 625, 639, 848, 994
Bst6I	CTCTTC	3 cut(s)	287, 384, 717
BstACI	GRCGYC	2 cut(s)	153, 163
BstC8I	GCNNGC	4 cut(s)	47, 112, 151, 157
BstDSI	CCRYGG	2 cut(s)	179, 492
BstF5I	GGATG	2 cut(s)	775, 1081
BstFNI	CGCG	3 cut(s)	72, 181, 233
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	334, 818
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	331, 815
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 93, 150, 900
BstNSI	RCATGY	3 cut(s)	736, 947, 1090
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSFI	CTRYAG	2 cut(s)	419, 852
BstSLI	GKGCMC	2 cut(s)	89, 999
BstUI	CGCG	3 cut(s)	72, 181, 233
BstV1I	GCAGC	1 cut(s)	915
BstXI	CCANNNNNNTGG	1 cut(s)	1007
Bsu15I	ATCGAT	1 cut(s)	1063
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	4 cut(s)	117, 553, 746, 894
BsuTUI	ATCGAT	1 cut(s)	1063
BtgI	CCRYGG	2 cut(s)	179, 492
BtsCI	GGATG	2 cut(s)	775, 1081
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	3 cut(s)	531, 627, 673
Cac8I	GCNNGC	4 cut(s)	47, 112, 151, 157
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	3 cut(s)	110, 149, 155
Cfr13I	GGNCC	1 cut(s)	551
Cfr42I	CCGCGG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	1063
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	849, 1084
CviAII	CATG	5 cut(s)	42, 733, 896, 944, 1087
CviQI	GTAC	2 cut(s)	849, 1084
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	2 cut(s)	333, 817
DpnII	GATC	2 cut(s)	331, 815
Eam1104I	CTCTTC	3 cut(s)	287, 384, 717
EarI	CTCTTC	3 cut(s)	287, 384, 717
EciI	GGCGGA	4 cut(s)	56, 89, 162, 174
Eco57I	CTGAAG	2 cut(s)	488, 1091
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	2 cut(s)	80, 548
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	5 cut(s)	45, 736, 899, 947, 1090
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	5 cut(s)	41, 732, 895, 943, 1086
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	5 cut(s)	70, 115, 176, 179, 904
FokI	GGATG	2 cut(s)	782, 1088
Fsp4HI	GCNGC	5 cut(s)	70, 115, 176, 179, 904
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	5 cut(s)	70, 115, 176, 179, 904
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	117, 553, 746, 894
HapII	CCGG	6 cut(s)	111, 139, 150, 156, 323, 413
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	2 cut(s)	153, 163
Hin1II	CATG	5 cut(s)	45, 736, 899, 947, 1090
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HpaII	CCGG	6 cut(s)	111, 139, 150, 156, 323, 413
HphI	GGTGA	6 cut(s)	203, 250, 292, 465, 627, 689
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	4 cut(s)	202, 463, 466, 526
HpyAV	CCTTC	3 cut(s)	860, 884, 1066
HpyCH4III	ACNGT	6 cut(s)	477, 607, 625, 639, 848, 994
HpyCH4IV	ACGT	2 cut(s)	163, 242
HpyCH4V	TGCA	2 cut(s)	45, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 93, 150, 900
HpySE526I	ACGT	2 cut(s)	163, 242
Hsp92I	GRCGYC	2 cut(s)	153, 163
Hsp92II	CATG	5 cut(s)	45, 736, 899, 947, 1090
HspAI	GCGC	1 cut(s)	153
KasI	GGCGCC	1 cut(s)	152
KroI	GCCGGC	3 cut(s)	110, 149, 155
KroNI	GCCGGC	3 cut(s)	112, 151, 157
KspI	CCGCGG	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	331, 815
LmnI	GCTCC	2 cut(s)	65, 141
LpnPI	CCDG	9 cut(s)	106, 124, 152, 163, 169, 206, 336, 426, 437
Lsp1109I	GCAGC	1 cut(s)	915
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	2 cut(s)	163, 242
MaeIII	GTNAC	5 cut(s)	238, 529, 601, 625, 633
MalI	GATC	2 cut(s)	333, 817
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	2 cut(s)	331, 815
MhlI	GDGCHC	2 cut(s)	89, 999
MluCI	AATT	2 cut(s)	430, 1046
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	3 cut(s)	464, 578, 641
MmeI	TCCRAC	2 cut(s)	545, 747
MreI	CGCCGGCG	3 cut(s)	110, 149, 155
MroNI	GCCGGC	3 cut(s)	110, 149, 155
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	3 cut(s)	192, 698, 1049
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	6 cut(s)	111, 139, 150, 156, 323, 413
MvnI	CGCG	3 cut(s)	72, 181, 233
MwoI	GCNNNNNNNGC	4 cut(s)	66, 93, 150, 900
NaeI	GCCGGC	3 cut(s)	112, 151, 157
NarI	GGCGCC	1 cut(s)	153
NdeII	GATC	2 cut(s)	331, 815
NgoMIV	GCCGGC	3 cut(s)	110, 149, 155
NlaIII	CATG	5 cut(s)	45, 736, 899, 947, 1090
NlaIV	GGNNCC	3 cut(s)	86, 143, 154
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	5 cut(s)	238, 529, 601, 625, 633
NspI	RCATGY	3 cut(s)	736, 947, 1090
OliI	CACNNNNGTG	1 cut(s)	497
PciI	ACATGT	2 cut(s)	943, 1086
PdiI	GCCGGC	3 cut(s)	112, 151, 157
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	7 cut(s)	169, 217, 488, 571, 710, 727, 821
PkrI	GCNGC	5 cut(s)	71, 116, 177, 180, 905
PleI	GAGTC	3 cut(s)	463, 578, 640
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	3 cut(s)	463, 578, 640
PscI	ACATGT	2 cut(s)	943, 1086
PshAI	GACNNNNGTC	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	1111
PspN4I	GGNNCC	3 cut(s)	86, 143, 154
PspPI	GGNCC	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	423
RsaI	GTAC	2 cut(s)	850, 1085
RsaNI	GTAC	2 cut(s)	849, 1084
RseI	CAYNNNNRTG	1 cut(s)	497
SacII	CCGCGG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	192, 698, 1049
SatI	GCNGC	5 cut(s)	70, 115, 176, 179, 904
Sau3AI	GATC	2 cut(s)	331, 815
Sau96I	GGNCC	1 cut(s)	551
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	3 cut(s)	464, 578, 641
SduI	GDGCHC	2 cut(s)	89, 999
SetI	ASST	8 cut(s)	8, 125, 166, 245, 303, 675, 685, 1085
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	419, 852
SfoI	GGCGCC	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	182
SgrAI	CRCCGGYG	3 cut(s)	110, 149, 155
SgrBI	CCGCGG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	430, 1046
SspDI	GGCGCC	1 cut(s)	152
TaaI	ACNGT	6 cut(s)	477, 607, 625, 639, 848, 994
TaiI	ACGT	2 cut(s)	166, 245
TaqI	TCGA	4 cut(s)	561, 694, 713, 1063
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	430, 1046
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	4 cut(s)	72, 117, 178, 181
TfiI	GAWTC	7 cut(s)	169, 217, 488, 571, 710, 727, 821
Tru1I	TTAA	3 cut(s)	192, 698, 1049
Tru9I	TTAA	3 cut(s)	192, 698, 1049
TscAI	CASTG	3 cut(s)	538, 634, 673
TseFI	GTSAC	5 cut(s)	238, 529, 601, 625, 633
TseI	GCWGC	1 cut(s)	903
Tsp45I	GTSAC	5 cut(s)	238, 529, 601, 625, 633
TspDTI	ATGAA	2 cut(s)	503, 776
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	3 cut(s)	538, 634, 673
XceI	RCATGY	3 cut(s)	736, 947, 1090
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	726
ZraI	GACGTC	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.