Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Forward (+)

70193111 .. 70193770

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0517500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGAGGCAAATGGAGAAATATAAGTCATGTGGTACAAGTTCTGCCTCAGCCCCAAAGAATAAATCATCTTCACCATCTCAGGTAGCAAAGAAAGCTGGGATTGTAAACAACGATGTGGATAGATATCTTGGAGATCCTATTGAAGGAGATGGTGAAGGCTTTGACTTGTTGAACTGGTGGAGGGTGAATGGAGTTTGCAAATATCCTATATTGGCCCGCATTGCAAAGGATGTTTTAGCTATTCCGGTGTCAACCATAGCTTCGGAATCTTCCTTTAGCACGAGTGGGAGGATTATTGATCCATACCGTAGCTCTCTAAGTCCTAGAATGGTGGAGGCTTTGATATGCACACAAAATTGGCTTAGGAGTGAAAATGTGTATCTACATCATATGCCTACTGTTGAGGAGATGGAGTTGTGTGAAGAAGCGGAAAGAGAGATGCTTAAGATGCCATGTGGAGCTGCAGTGGGGAGTAGTCGGAGCGGAATGTTACCTCCAAAGTCGAAGACTTCATCTTTCCGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

176

Amino Acids

19.38

Weight (kDa)

8.59

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	40 - 122	4.9e-28	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	486
AciI	CCGC	3 cut(s)	220, 431, 486
AclWI	GGATC	2 cut(s)	131, 296
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	2 cut(s)	146, 175
AluBI	AGCT	6 cut(s)	98, 242, 263, 315, 464, 527
AluI	AGCT	6 cut(s)	98, 242, 263, 315, 464, 527
AlwI	GGATC	2 cut(s)	131, 296
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	66, 167, 199
BauI	CACGAG	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	515
BbvCI	CCTCAGC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	85, 146, 406
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	217
BmsI	GCATC	2 cut(s)	432, 441
BpiI	GAAGAC	1 cut(s)	515
Bpu10I	CCTNAGC	2 cut(s)	49, 365
BsaBI	GATNNNNATC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 453, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	126
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	63, 95
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	218
Bsp143I	GATC	2 cut(s)	136, 301
BspACI	CCGC	3 cut(s)	220, 431, 486
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	62, 94
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	2 cut(s)	131, 296
BspTI	CTTAAG	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	136, 301
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	311, 403
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	4 cut(s)	49, 81, 320, 365
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	139, 304
BstMBI	GATC	2 cut(s)	136, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 224, 451
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	30, 456
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	4 cut(s)	49, 81, 320, 365
DpnI	GATC	2 cut(s)	138, 303
DpnII	GATC	2 cut(s)	136, 301
Eco32I	GATATC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	128
FaeI	CATG	2 cut(s)	33, 459
FaiI	YATR	9 cut(s)	24, 31, 212, 260, 307, 349, 393, 395, 457
FatI	CATG	2 cut(s)	29, 455
FauI	CCCGC	1 cut(s)	227
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	1 cut(s)	465
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	2 cut(s)	33, 459
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	3 cut(s)	66, 167, 199
Hpy166II	GTNNAC	2 cut(s)	109, 255
Hpy188I	TCNGA	3 cut(s)	268, 483, 524
Hpy8I	GTNNAC	2 cut(s)	109, 255
HpyAV	CCTTC	2 cut(s)	140, 152
HpyCH4III	ACNGT	2 cut(s)	311, 403
HpyCH4V	TGCA	4 cut(s)	201, 227, 351, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 224, 451
HpyF3I	CTNAG	4 cut(s)	49, 81, 320, 365
Hsp92II	CATG	2 cut(s)	33, 459
Kzo9I	GATC	2 cut(s)	136, 301
LmnI	GCTCC	2 cut(s)	461, 483
LpnPI	CCDG	4 cut(s)	68, 84, 163, 261
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	432, 441
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	2 cut(s)	138, 303
MbiI	CCGCTC	1 cut(s)	486
MboI	GATC	2 cut(s)	136, 301
MboII	GAAGA	5 cut(s)	16, 63, 264, 437, 520
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	6 cut(s)	58, 177, 285, 331, 400, 507
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	95, 224, 451
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	2 cut(s)	136, 301
NlaIII	CATG	2 cut(s)	33, 459
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	136, 301
Sau96I	GGNCC	1 cut(s)	217
SetI	ASST	8 cut(s)	87, 100, 244, 265, 317, 466, 499, 529
SfaNI	GCATC	2 cut(s)	432, 441
SfcI	CTRYAG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	220, 431, 486
SspMI	CTAG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	311, 403
TaqI	TCGA	1 cut(s)	506
TasI	AATT	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	17, 504
TspRI	CASTG	1 cut(s)	474
Vha464I	CTTAAG	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	144
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.