Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Forward (+)

4186876 .. 4195419

Gene Structure 8544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3114 bp

ATGAGCTTCTCCGCAAAGCCACAGCCACTCGCCCTAATCTCATGCACGCCTCACTCCCGCTCCCTCCGCCGCGACTTCCTCGGGTGCCCCCACAGCCTCCGCCCCCTCGCCGGCGGCCTCAGGTCGCTGAGAAAGAACCGGAGCCTCGCCGGCGCCGGCGGACGTCAGAATCCGCCGCCGCGGTTGTTGATTAAAGCGTCGCTCGGTTCTCACTCGATTCTGGTGTTGGTCGCCGTGGTGACGTTCTCGGCGGTTTCTATTGTCTACTTCAACCGGTCGGTGAAGCGGAAGAAGAGAGAGGTTAGTGGTGAAGTTGAAGTTCCGGTGGAAGATCAGAGTATTGATTTTGATGCTTTGAAAGATGAGATTAGAGAGGCGAGGGAGGAGGAAGAGGCTTCTTCTTCTTCTCCGGTTCTGCAGTTTCACAATTCGTCTGTGATTTCTGCTCAGGAGTCGTCGTCGTCGTCTCTTTCACCGTTGGTGTTTGAATCCACGGCTGTGCTTCAGCCGCTTCATTTTCCGACGGAAGTCACTGAGTTTGATAAACTCGAGCCTCTTTTCGAGTTGCCGAATCTGATGGGGGACTCTGATTTTGGTTCTGTGACTGTGAGTGATGAGGAAACCGTCGCCGAGTCACCTTCTGTGTCTGGAAGTGATGAGGAGAGCAGTGAGGTTGGTGAAGCTAATGGCTTTGGATTACGTAATGGAGAATCGGATAGAGAAGAGATTCATATGTTCTATGAGGCCAACAAGTCTGAGATGAAGTTGGATGATGATAAATTTTCTTCGTTTCTGAGAAATAGCACCCTCACAAGATCAGATTCGTTTCGACAAGTTTCGCATCACAGTACTACAGAGAATGTAGAAGGCAAAATACCCAATCACAAAGAAGGCCATGTCCGCAGCAGAAAAGACTTGGGGAACGGCAATGGATATAATGGACATGTAGCAGATAAAGAACTAAGACATTTGCCTAAAAAGAACCATAAGACTGTGCCCCAACCGAATGGAATACATACAAGCGACACACAATATGTTTCCGAGCAATTAAGTGCTTACCATCGATTGCTGAAGGATGGGAGGTTATCCGACTCTTTAAGGTTGCTTGAAGATTTGGAGAAAAAGGATTTGTTGGATATGAATAAGGTTTATCATGGAAGGTTTTTTGAAACCTGCAAAAAGAAAAAGGCTGTTGATCAAGCTTTTCGTTTCATCAAACTGATTCCAAATCCAACAATGAGTACATATAATATGCTTATGTCTGTCTGTGCGAGTTCTCAAGATTCAGAGGGTGCTTTCAATGTTCTGGGACTTGTCCGGGAGGCTGGGCTAAGAGTTGATTGCAAACTTTACACTACTCTGATATCAACATGTGCGAAAAGTGGAAAAGTCTACACTATGTTTGATGTCTTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACTTATGGGGCACTGATTGATGGTTGTGGCAGAGCTGGGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGAGTTGTATACAATGCGCTTATTACTGCATGCGGTCAATCAGGAGCAGTTGACCGTGCTTTTGATGTCTTAGAAGAAATGAAGGCAGAGACACAGCCTATAGAACCTGATCACACAACTGTTGGTGCACTAATAAAAGCATGCGCAAATGCTGGTCAGGTTGAAAGGGCACGTGAAGTGTATAAGATGATTCATAAATACAAGATTAAGGGTAGTTCTGAGGTTTACACCATAGCTGTTAATTGTTGCAGCCTGACTGGTGATTGGGACTTTGCTTGCACTGTATATGATGACATGATCAGGAATGGTGTGGTCCCTGATGAGATGTTCCTGAGTGCATTAATAGATGTTGCTGGGCATGCTGGAAAGCTAGATGCTGCCTTTGAAATCATACAGGAAGCCAGAAATCGAGGAATACAAGTTGGAACTGTATCATATAGCTCATTGATGGGCGCATGTAGCAATGCCAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCAGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCGGAAATGAAGAGTATAGGACTGCGTCCAAACAGTATAACATACTGCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGAAGCTGGCCTGATGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTGTAGATGCATTATAGGCATGTGCTTACGGAGATCTGAGAAGGCATGTACACTGGGTGAAACTGTCTTGCCGCTTGACTCAGGCCGACCGCAAGTTGATAGTAAATGGGCATCAGTGGCCTTAATGGTCTATCGGAAAACTATTGTCGCTGGTGCTACTCCTACCATTGAAATTATATCACAAGTTTTGGGATGCTTGCAGCTCCCTTATGATGCGTCATTTAAGAAGAGAGTTATTGAGAATCTTGGTGTAACTGCCGACACTTCAAGACCTTCAAAACTCTTTTCATTGATAGATGGGTTTGGCGAATATGATCCTCGTGCATTTTCATTACTTGAGGAAGCTGCTTCACTTGGAATTGTTCCATGTGTTTCCTTCAAAGTTAATCCCATTGTTGTTGATGCAAAGAAGTTGCAACTTCATACTGCTAAGGTCTACATCTTGACTGTTCTGAGAGGTCTCAAACATCGGCTTGCTGCTGGTTCGAAGTTGCCCAACATGACCATTTTACTGCCTGTAGAAAAGACGCAAATTTTGTCTCCCAAGGGGAAGATGAAGACAATCTACCTTTCAGGAAGGGTTGGCCAGTCAGTTGCAGCATTATTGAGAAGGCTTGGGCTAGATTACCAAGGAAATGAATCACGTGGAAAGATAAGAATCAGTGGGTTAACCATGAAAAGATGGTTTCAGCCAAAGCTTGCTTCACCATTCACTGGGAAACCGGAAGAATTAGGCTCATCCCAGCTACGGCTGGGGAAAGGAATCACGCATCAGCAGCGCAATATTCGAACTGGAAATTTTTCCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1037

Amino Acids

113.96

Weight (kDa)

8.28

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	414 - 585	2.7e-18	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	440 - 494	1.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	450 - 494	3.9e-12	PPR repeat family
TPR_24	PF23276	454 - 580	6e-15	Fungal tetratrico peptide repeats
PPR_3	PF13812	470 - 530	8.5e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	478 - 503	2.6e-06	PPR repeat
PPR_2	PF13041	488 - 528	2.2e-06	PPR repeat family
PPR_1	PF12854	513 - 545	2.3e-07	PPR repeat
PPR_2	PF13041	516 - 567	1.7e-09	PPR repeat family
PPR_long	PF17177	591 - 743	3.3e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	647 - 705	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	659 - 707	1.9e-08	PPR repeat family
PPR_3	PF13812	682 - 737	1.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	694 - 737	1.9e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
Acc16I	TGCGCA	1 cut(s)	1696
Acc36I	ACCTGC	1 cut(s)	1181
AccB1I	GGYRCC	2 cut(s)	84, 152
AccB7I	CCANNNNNTGG	3 cut(s)	1420, 2025, 3014
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	4 cut(s)	264, 1392, 1560, 2736
AccII	CGCG	2 cut(s)	72, 181
AclWI	GGATC	3 cut(s)	2061, 2133, 2609
AcoI	YGGCCR	1 cut(s)	2884
AcsI	RAATTY	3 cut(s)	779, 2832, 3097
AcuI	CTGAAG	2 cut(s)	488, 1091
AcvI	CACGTG	2 cut(s)	1724, 2945
AcyI	GRCGYC	2 cut(s)	153, 163
AdeI	CACNNNGTG	1 cut(s)	2357
AfaI	GTAC	3 cut(s)	850, 1243, 2350
AfiI	CCNNNNNNNGG	5 cut(s)	110, 1420, 2025, 3014, 3048
AflII	CTTAAG	1 cut(s)	2057
AflIII	ACRYGT	2 cut(s)	943, 1370
AgeI	ACCGGT	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	2986, 3018
AleI	CACNNNNGTG	1 cut(s)	497
Alw21I	GWGCWC	2 cut(s)	1681, 2046
Alw26I	GTCTC	4 cut(s)	471, 1634, 2765, 2844
Alw44I	GTGCAC	1 cut(s)	1677
AlwI	GGATC	3 cut(s)	2061, 2133, 2609
Ama87I	CYCGRG	2 cut(s)	80, 548
AoxI	GGCC	7 cut(s)	115, 744, 892, 2245, 2383, 2418, 2884
ApaLI	GTGCAC	1 cut(s)	1677
ApeKI	GCWGC	8 cut(s)	903, 1800, 1928, 2500, 2645, 2777, 2897, 3076
ApoI	RAATTY	3 cut(s)	779, 2832, 3097
ArsI	GACNNNNNNTTYG	6 cut(s)	575, 607, 1595, 1627, 2818, 2850
AseI	ATTAAT	1 cut(s)	1892
AsiGI	ACCGGT	1 cut(s)	273
Asp700I	GAANNNNTTC	2 cut(s)	726, 3100
AspLEI	GCGC	5 cut(s)	155, 1570, 1697, 2006, 3081
AspS9I	GGNCC	1 cut(s)	1864
AsuC2I	CCSGG	1 cut(s)	1319
AsuHPI	GGTGA	9 cut(s)	250, 292, 320, 465, 627, 689, 1823, 2369, 2997
AsuII	TTCGAA	2 cut(s)	2786, 3088
AvaI	CYCGRG	2 cut(s)	80, 548
AvaII	GGWCC	1 cut(s)	1864
AxyI	CCTNAGG	1 cut(s)	119
BaeGI	GKGCMC	5 cut(s)	89, 999, 1465, 1681, 1723
BalI	TGGCCA	1 cut(s)	2886
BanI	GGYRCC	2 cut(s)	84, 152
BanII	GRGCYC	1 cut(s)	2046
BarI	GAAGNNNNNNTAC	4 cut(s)	858, 890, 2849, 2881
BauI	CACGAG	1 cut(s)	2619
BbrPI	CACGTG	2 cut(s)	1724, 2945
BbsI	GAAGAC	2 cut(s)	1402, 2864
Bbv12I	GWGCWC	2 cut(s)	1681, 2046
BbvI	GCAGC	8 cut(s)	915, 1812, 1915, 2512, 2632, 2764, 2909, 3088
BccI	CCATC	9 cut(s)	571, 1068, 1070, 1414, 1466, 1993, 2114, 2591, 2976
BceAI	ACGGC	4 cut(s)	218, 510, 940, 3065
BclI	TGATCA	3 cut(s)	1195, 1660, 1848
BcnI	CCSGG	1 cut(s)	1319
BcoDI	GTCTC	4 cut(s)	471, 1634, 2765, 2844
BfaI	CTAG	3 cut(s)	1922, 2237, 2921
BfmI	CTRYAG	5 cut(s)	416, 852, 1650, 2132, 2817
BfoI	RGCGCY	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	2057
BfuAI	ACCTGC	1 cut(s)	1181
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	2333
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	1319
Bme18I	GGWCC	1 cut(s)	1864
BmeT110I	CYCGRG	2 cut(s)	80, 548
BmgT120I	GGNCC	1 cut(s)	1864
BmiI	GGNNCC	4 cut(s)	86, 143, 154, 1866
BmrFI	CCNGG	1 cut(s)	1319
BmrI	ACTGGG	2 cut(s)	2363, 3024
BmuI	ACTGGG	2 cut(s)	2363, 3024
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	1402, 2864
BpmI	CTGGAG	2 cut(s)	1452, 2060
Bpu10I	CCTNAGC	2 cut(s)	447, 2730
Bpu14I	TTCGAA	2 cut(s)	2786, 3088
BpuEI	CTTGAG	3 cut(s)	1263, 2247, 2657
BpuMI	CCSGG	1 cut(s)	1319
Bsa29I	ATCGAT	1 cut(s)	1063
BsaAI	YACGTR	3 cut(s)	701, 1724, 2945
BsaBI	GATNNNNATC	2 cut(s)	2124, 2957
BsaHI	GRCGYC	2 cut(s)	153, 163
BsaI	GGTCTC	1 cut(s)	2765
BsaJI	CCNNGG	7 cut(s)	79, 179, 234, 492, 2844, 2929, 3105
BsaWI	WCCGGW	5 cut(s)	138, 273, 322, 409, 3022
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 443, 473
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 1420, 2025, 3014, 3048
Bse118I	RCCGGY	4 cut(s)	110, 149, 155, 273
Bse1I	ACTGG	6 cut(s)	1813, 2043, 2358, 2887, 3019, 3097
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	934, 2020
Bse8I	GATNNNNATC	2 cut(s)	2124, 2957
BseCI	ATCGAT	1 cut(s)	1063
BseDI	CCNNGG	7 cut(s)	79, 179, 234, 492, 2844, 2929, 3105
BseGI	GGATG	5 cut(s)	775, 1081, 2236, 2498, 3038
BseJI	GATNNNNATC	2 cut(s)	2124, 2957
BseLI	CCNNNNNNNGG	5 cut(s)	110, 1420, 2025, 3014, 3048
BseMI	GCAATG	2 cut(s)	934, 2020
BseNI	ACTGG	6 cut(s)	1813, 2043, 2358, 2887, 3019, 3097
BseRI	GAGGAG	2 cut(s)	398, 674
BseSI	GKGCMC	5 cut(s)	89, 999, 1465, 1681, 1723
BseXI	GCAGC	8 cut(s)	915, 1812, 1915, 2512, 2632, 2764, 2909, 3088
BseYI	CCCAGC	5 cut(s)	1325, 1487, 1904, 3042, 3052
Bsh1236I	CGCG	2 cut(s)	72, 181
Bsh1285I	CGRYCG	2 cut(s)	278, 2390
BshFI	GGCC	7 cut(s)	117, 746, 894, 2247, 2385, 2420, 2886
BshNI	GGYRCC	2 cut(s)	84, 152
BshTI	ACCGGT	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	1063
BsiEI	CGRYCG	2 cut(s)	278, 2390
BsiHKAI	GWGCWC	2 cut(s)	1681, 2046
BsiHKCI	CYCGRG	2 cut(s)	80, 548
BsiSI	CCGG	9 cut(s)	111, 139, 150, 156, 274, 323, 410, 1318, 3023
BslFI	GGGAC	4 cut(s)	596, 1323, 1832, 1850
BslI	CCNNNNNNNGG	5 cut(s)	110, 1420, 2025, 3014, 3048
BsmAI	GTCTC	4 cut(s)	471, 1634, 2765, 2844
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	4 cut(s)	596, 1323, 1832, 1850
BsnI	GGCC	7 cut(s)	117, 746, 894, 2247, 2385, 2420, 2886
Bso31I	GGTCTC	1 cut(s)	2765
BsoBI	CYCGRG	2 cut(s)	80, 548
Bsp119I	TTCGAA	2 cut(s)	2786, 3088
Bsp1286I	GDGCHC	6 cut(s)	89, 999, 1465, 1681, 1723, 2046
Bsp1407I	TGTACA	1 cut(s)	2348
BspANI	GGCC	7 cut(s)	117, 746, 894, 2247, 2385, 2420, 2886
BspDI	ATCGAT	1 cut(s)	1063
BspFNI	CGCG	2 cut(s)	72, 181
BspLI	GGNNCC	4 cut(s)	86, 143, 154, 1866
BspMAI	CTGCAG	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	1181
BspPI	GGATC	3 cut(s)	2061, 2133, 2609
BspT104I	TTCGAA	2 cut(s)	2786, 3088
BspT107I	GGYRCC	2 cut(s)	84, 152
BspTI	CTTAAG	1 cut(s)	2057
BspTNI	GGTCTC	1 cut(s)	2765
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	934, 2020
BsrFI	RCCGGY	4 cut(s)	110, 149, 155, 273
BsrGI	TGTACA	1 cut(s)	2348
BsrI	ACTGG	6 cut(s)	1813, 2043, 2358, 2887, 3019, 3097
BssAI	RCCGGY	4 cut(s)	110, 149, 155, 273
BssECI	CCNNGG	7 cut(s)	79, 179, 234, 492, 2844, 2929, 3105
BssNAI	GTATAC	1 cut(s)	1561
BssNI	GRCGYC	2 cut(s)	153, 163
BssSI	CACGAG	1 cut(s)	2619
BssT1I	CCWWGG	3 cut(s)	2844, 2929, 3105
Bst1107I	GTATAC	1 cut(s)	1561
Bst2BI	CACGAG	1 cut(s)	2619
Bst6I	CTCTTC	5 cut(s)	287, 384, 717, 2159, 2522
BstACI	GRCGYC	2 cut(s)	153, 163
BstAFI	CTTAAG	1 cut(s)	2057
BstAPI	GCANNNNNTGC	1 cut(s)	1511
BstAUI	TGTACA	1 cut(s)	2348
BstBAI	YACGTR	3 cut(s)	701, 1724, 2945
BstBI	TTCGAA	2 cut(s)	2786, 3088
BstDSI	CCRYGG	3 cut(s)	179, 234, 492
BstF5I	GGATG	5 cut(s)	775, 1081, 2236, 2498, 3038
BstFNI	CGCG	2 cut(s)	72, 181
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	5 cut(s)	155, 1570, 1697, 2006, 3081
BstMAI	GTCTC	4 cut(s)	471, 1634, 2765, 2844
BstMCI	CGRYCG	2 cut(s)	278, 2390
BstNSI	RCATGY	8 cut(s)	947, 1374, 1584, 1695, 1913, 2010, 2323, 2349
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	1317
BstSFI	CTRYAG	5 cut(s)	416, 852, 1650, 2132, 2817
BstSLI	GKGCMC	5 cut(s)	89, 999, 1465, 1681, 1723
BstSNI	TACGTA	1 cut(s)	701
BstUI	CGCG	2 cut(s)	72, 181
BstV1I	GCAGC	8 cut(s)	915, 1812, 1915, 2512, 2632, 2764, 2909, 3088
BstV2I	GAAGAC	2 cut(s)	1402, 2864
BstX2I	RGATCY	2 cut(s)	2053, 2333
BstXI	CCANNNNNNTGG	1 cut(s)	1007
BstYI	RGATCY	2 cut(s)	2053, 2333
BstZ17I	GTATAC	1 cut(s)	1561
Bsu15I	ATCGAT	1 cut(s)	1063
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	7 cut(s)	117, 746, 894, 2247, 2385, 2420, 2886
BsuTUI	ATCGAT	1 cut(s)	1063
BtgI	CCRYGG	3 cut(s)	179, 234, 492
BtsCI	GGATG	5 cut(s)	775, 1081, 2236, 2498, 3038
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	9 cut(s)	531, 673, 1463, 1830, 2036, 2351, 2421, 2968, 3012
BveI	ACCTGC	1 cut(s)	1181
CfoI	GCGC	5 cut(s)	155, 1570, 1697, 2006, 3081
Cfr10I	RCCGGY	4 cut(s)	110, 149, 155, 273
Cfr13I	GGNCC	1 cut(s)	1864
Cfr42I	CCGCGG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	1063
CseI	GACGC	4 cut(s)	186, 2168, 2505, 2836
Csp6I	GTAC	3 cut(s)	849, 1242, 2349
CspAI	ACCGGT	1 cut(s)	273
CviQI	GTAC	3 cut(s)	849, 1242, 2349
DinI	GGCGCC	1 cut(s)	154
DraIII	CACNNNGTG	1 cut(s)	2357
EaeI	YGGCCR	1 cut(s)	2884
Eam1104I	CTCTTC	5 cut(s)	287, 384, 717, 2159, 2522
EarI	CTCTTC	5 cut(s)	287, 384, 717, 2159, 2522
EciI	GGCGGA	4 cut(s)	56, 89, 162, 174
Ecl136II	GAGCTC	1 cut(s)	2044
Eco105I	TACGTA	1 cut(s)	701
Eco130I	CCWWGG	3 cut(s)	2844, 2929, 3105
Eco24I	GRGCYC	1 cut(s)	2046
Eco31I	GGTCTC	1 cut(s)	2765
Eco32I	GATATC	1 cut(s)	1365
Eco47I	GGWCC	1 cut(s)	1864
Eco53kI	GAGCTC	1 cut(s)	2044
Eco57I	CTGAAG	2 cut(s)	488, 1091
Eco72I	CACGTG	2 cut(s)	1724, 2945
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	2 cut(s)	80, 548
EcoICRI	GAGCTC	1 cut(s)	2044
EcoRV	GATATC	1 cut(s)	1365
EcoT14I	CCWWGG	3 cut(s)	2844, 2929, 3105
EcoT22I	ATGCAT	1 cut(s)	2312
EcoT38I	GRGCYC	1 cut(s)	2046
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	3 cut(s)	2844, 2929, 3105
Esp3I	CGTCTC	1 cut(s)	471
FaqI	GGGAC	4 cut(s)	596, 1323, 1832, 1850
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	732
FbaI	TGATCA	3 cut(s)	1195, 1660, 1848
FblI	GTMKAC	4 cut(s)	264, 1392, 1560, 2736
FokI	GGATG	5 cut(s)	782, 1088, 2243, 2505, 3025
FriOI	GRGCYC	1 cut(s)	2046
FspBI	CTAG	3 cut(s)	1922, 2237, 2921
FspI	TGCGCA	1 cut(s)	1696
GlaI	GCGC	5 cut(s)	154, 1569, 1696, 2005, 3080
GsaI	CCCAGC	5 cut(s)	1329, 1491, 1908, 3046, 3056
GsuI	CTGGAG	2 cut(s)	1452, 2060
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	7 cut(s)	117, 746, 894, 2247, 2385, 2420, 2886
HapII	CCGG	9 cut(s)	111, 139, 150, 156, 274, 323, 410, 1318, 3023
HgaI	GACGC	4 cut(s)	186, 2168, 2505, 2836
HhaI	GCGC	5 cut(s)	155, 1570, 1697, 2006, 3081
Hin1I	GRCGYC	2 cut(s)	153, 163
Hin6I	GCGC	5 cut(s)	153, 1568, 1695, 2004, 3079
HinP1I	GCGC	5 cut(s)	153, 1568, 1695, 2004, 3079
HincII	GTYRAC	2 cut(s)	1603, 2970
HindII	GTYRAC	2 cut(s)	1603, 2970
HindIII	AAGCTT	2 cut(s)	1200, 2996
HpaI	GTTAAC	1 cut(s)	2970
HpaII	CCGG	9 cut(s)	111, 139, 150, 156, 274, 323, 410, 1318, 3023
HphI	GGTGA	9 cut(s)	250, 292, 320, 465, 627, 689, 1823, 2369, 2997
Hpy99I	CGWCG	6 cut(s)	202, 460, 463, 466, 526, 629
HpyCH4IV	ACGT	5 cut(s)	163, 242, 700, 1723, 2944
HpySE526I	ACGT	5 cut(s)	163, 242, 700, 1723, 2944
Hsp92I	GRCGYC	2 cut(s)	153, 163
HspAI	GCGC	5 cut(s)	153, 1568, 1695, 2004, 3079
KasI	GGCGCC	1 cut(s)	152
KroI	GCCGGC	3 cut(s)	110, 149, 155
KroNI	GCCGGC	3 cut(s)	112, 151, 157
Ksp22I	TGATCA	3 cut(s)	1195, 1660, 1848
KspAI	GTTAAC	1 cut(s)	2970
KspI	CCGCGG	1 cut(s)	182
LmnI	GCTCC	6 cut(s)	65, 141, 1595, 2041, 2259, 2508
Lsp1109I	GCAGC	8 cut(s)	915, 1812, 1915, 2512, 2632, 2764, 2909, 3088
MaeI	CTAG	3 cut(s)	1922, 2237, 2921
MaeII	ACGT	5 cut(s)	163, 242, 700, 1723, 2944
MaeIII	GTNAC	5 cut(s)	238, 529, 601, 633, 2551
MbiI	CCGCTC	1 cut(s)	60
MflI	RGATCY	2 cut(s)	2053, 2333
MhlI	GDGCHC	6 cut(s)	89, 999, 1465, 1681, 1723, 2046
MlsI	TGGCCA	1 cut(s)	2886
MluNI	TGGCCA	1 cut(s)	2886
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	5 cut(s)	461, 578, 641, 1085, 2372
MmeI	TCCRAC	7 cut(s)	545, 747, 1113, 1113, 1256, 1954, 2136
Mox20I	TGGCCA	1 cut(s)	2886
Mph1103I	ATGCAT	1 cut(s)	2312
MreI	CGCCGGCG	3 cut(s)	110, 149, 155
MroNI	GCCGGC	3 cut(s)	110, 149, 155
MroXI	GAANNNNTTC	2 cut(s)	726, 3100
MscI	TGGCCA	1 cut(s)	2886
MslI	CAYNNNNRTG	2 cut(s)	497, 1455
Msp20I	TGGCCA	1 cut(s)	2886
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	2057
MspI	CCGG	9 cut(s)	111, 139, 150, 156, 274, 323, 410, 1318, 3023
MspR9I	CCNGG	1 cut(s)	1319
MvnI	CGCG	2 cut(s)	72, 181
NaeI	GCCGGC	3 cut(s)	112, 151, 157
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	1319
NdeI	CATATG	1 cut(s)	732
NgoMIV	GCCGGC	3 cut(s)	110, 149, 155
NlaIV	GGNNCC	4 cut(s)	86, 143, 154, 1866
NmeAIII	GCCGAG	2 cut(s)	227, 655
NmuCI	GTSAC	4 cut(s)	238, 529, 601, 633
NsbI	TGCGCA	1 cut(s)	1696
NsiI	ATGCAT	1 cut(s)	2312
NspI	RCATGY	8 cut(s)	947, 1374, 1584, 1695, 1913, 2010, 2323, 2349
NspV	TTCGAA	2 cut(s)	2786, 3088
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	3 cut(s)	1584, 1695, 1913
PaeR7I	CTCGAG	1 cut(s)	548
PciI	ACATGT	2 cut(s)	943, 1370
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PdiI	GCCGGC	3 cut(s)	112, 151, 157
PdmI	GAANNNNTTC	2 cut(s)	726, 3100
PflFI	GACNNNGTC	1 cut(s)	2178
PflMI	CCANNNNNTGG	3 cut(s)	1420, 2025, 3014
PfoI	TCCNGGA	1 cut(s)	1317
PinAI	ACCGGT	1 cut(s)	273
PleI	GAGTC	5 cut(s)	460, 578, 640, 1085, 2372
PluTI	GGCGCC	1 cut(s)	156
PmaCI	CACGTG	2 cut(s)	1724, 2945
PmlI	CACGTG	2 cut(s)	1724, 2945
PpsI	GAGTC	5 cut(s)	460, 578, 640, 1085, 2372
Ppu21I	YACGTR	3 cut(s)	701, 1724, 2945
PscI	ACATGT	2 cut(s)	943, 1370
PshAI	GACNNNNGTC	1 cut(s)	527
PshBI	ATTAAT	1 cut(s)	1892
Psp124BI	GAGCTC	1 cut(s)	2046
PspCI	CACGTG	2 cut(s)	1724, 2945
PspFI	CCCAGC	5 cut(s)	1325, 1487, 1904, 3042, 3052
PspN4I	GGNNCC	4 cut(s)	86, 143, 154, 1866
PspPI	GGNCC	1 cut(s)	1864
PspXI	VCTCGAGB	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	420
PsuI	RGATCY	2 cut(s)	2053, 2333
PsyI	GACNNNGTC	1 cut(s)	2178
RsaI	GTAC	3 cut(s)	850, 1243, 2350
RsaNI	GTAC	3 cut(s)	849, 1242, 2349
RseI	CAYNNNNRTG	2 cut(s)	497, 1455
SacI	GAGCTC	1 cut(s)	2046
SacII	CCGCGG	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	1864
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	5 cut(s)	461, 578, 641, 1085, 2372
ScrFI	CCNGG	1 cut(s)	1319
SduI	GDGCHC	6 cut(s)	89, 999, 1465, 1681, 1723, 2046
SfcI	CTRYAG	5 cut(s)	416, 852, 1650, 2132, 2817
SfoI	GGCGCC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	548
Sfr303I	CCGCGG	1 cut(s)	182
SfuI	TTCGAA	2 cut(s)	2786, 3088
SgrAI	CRCCGGYG	3 cut(s)	110, 149, 155
SgrBI	CCGCGG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	1864
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	497, 1455
SmlI	CTYRAG	5 cut(s)	548, 1278, 2057, 2262, 2636
SmoI	CTYRAG	5 cut(s)	548, 1278, 2057, 2262, 2636
SnaBI	TACGTA	1 cut(s)	701
SphI	GCATGC	3 cut(s)	1584, 1695, 1913
SspDI	GGCGCC	1 cut(s)	152
SspI	AATATT	1 cut(s)	3085
SspMI	CTAG	3 cut(s)	1922, 2237, 2921
SstI	GAGCTC	1 cut(s)	2046
StyD4I	CCNGG	1 cut(s)	1317
StyI	CCWWGG	3 cut(s)	2844, 2929, 3105
TaiI	ACGT	5 cut(s)	166, 245, 703, 1726, 2947
TaqI	TCGA	9 cut(s)	215, 549, 561, 829, 1063, 1552, 1960, 2786, 3088
TatI	WGTACW	3 cut(s)	848, 1241, 2348
TauI	GCSGC	6 cut(s)	72, 117, 178, 181, 511, 2374
TscAI	CASTG	9 cut(s)	538, 673, 1470, 1837, 2043, 2358, 2421, 2968, 3019
TseFI	GTSAC	4 cut(s)	238, 529, 601, 633
TseI	GCWGC	8 cut(s)	903, 1800, 1928, 2500, 2645, 2777, 2897, 3076
Tsp45I	GTSAC	4 cut(s)	238, 529, 601, 633
TspGWI	ACGGA	2 cut(s)	539, 2344
TspRI	CASTG	9 cut(s)	538, 673, 1470, 1837, 2043, 2358, 2421, 2968, 3019
Tth111I	GACNNNGTC	1 cut(s)	2178
Van91I	CCANNNNNTGG	3 cut(s)	1420, 2025, 3014
Vha464I	CTTAAG	1 cut(s)	2057
VneI	GTGCAC	1 cut(s)	1677
VpaK11BI	GGWCC	1 cut(s)	1864
VspI	ATTAAT	1 cut(s)	1892
XapI	RAATTY	3 cut(s)	779, 2832, 3097
XbaI	TCTAGA	1 cut(s)	2236
XceI	RCATGY	8 cut(s)	947, 1374, 1584, 1695, 1913, 2010, 2323, 2349
XhoI	CTCGAG	1 cut(s)	548
XmiI	GTMKAC	4 cut(s)	264, 1392, 1560, 2736
XmnI	GAANNNNTTC	2 cut(s)	726, 3100
XspI	CTAG	3 cut(s)	1922, 2237, 2921
ZraI	GACGTC	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	1 cut(s)	2312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.